RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-212ENST00000524922 TCFL5Q9UL49 500 aa3.21□□□□□ -1.9
CD44-212ENST00000524922 SUPT16HQ9Y5B9 1047 aaKnown RBP3.21□□□□□ -1.9
CD44-212ENST00000524922 ZNF205O95201 554 aa3.2□□□□□ -1.9
CD44-212ENST00000524922 NME1P15531 152 aaKnown RBP3.2□□□□□ -1.9
CD44-212ENST00000524922 ERCC3P19447 782 aa3.2□□□□□ -1.9
CD44-212ENST00000524922 SDHBP21912 280 aa3.2□□□□□ -1.9
CD44-212ENST00000524922 VIPR1P32241 457 aa3.2□□□□□ -1.9
CD44-212ENST00000524922 CCNFP41002 786 aa3.2□□□□□ -1.9
CD44-212ENST00000524922 EPHB3P54753 998 aa3.2□□□□□ -1.9
CD44-212ENST00000524922 RNF4P78317 190 aa3.2□□□□□ -1.9
CD44-212ENST00000524922 CWF19L2Q2TBE0 894 aaKnown RBP3.2□□□□□ -1.9
CD44-212ENST00000524922 RTP2Q5QGT7 225 aa3.2□□□□□ -1.9
CD44-212ENST00000524922 NLRC3Q7RTR2 1065 aa3.2□□□□□ -1.9
CD44-212ENST00000524922 SLCO6A1Q86UG4 719 aa3.2□□□□□ -1.9
CD44-212ENST00000524922 TMEFF1Q8IYR6 380 aa3.2□□□□□ -1.9
CD44-212ENST00000524922 MARCH10Q8NA82 808 aaPredicted RBP3.2□□□□□ -1.9
CD44-212ENST00000524922 EAF1Q96JC9 268 aaPredicted RBP3.2□□□□□ -1.9
CD44-212ENST00000524922 ZNF512BQ96KM6 892 aaPredicted RBP3.2□□□□□ -1.9
CD44-212ENST00000524922 PARD6AQ9NPB6 346 aa3.2□□□□□ -1.9
CD44-212ENST00000524922 ERVK13-1Q9NX77 482 aa3.2□□□□□ -1.9
CD44-212ENST00000524922 OR14I1A6ND48 311 aa3.19□□□□□ -1.9
CD44-212ENST00000524922 SYPP08247 313 aa3.19□□□□□ -1.9
CD44-212ENST00000524922 RAG1P15918 1043 aa3.19□□□□□ -1.9
CD44-212ENST00000524922 PNLIPP16233 465 aa3.19□□□□□ -1.9
CD44-212ENST00000524922 RPL10P27635 214 aaKnown RBP3.19□□□□□ -1.9
CD44-212ENST00000524922 GBP1P32455 592 aa3.19□□□□□ -1.9
CD44-212ENST00000524922 HSF5Q4G112 596 aaPredicted RBP3.19□□□□□ -1.9
CD44-212ENST00000524922 SEZ6Q53EL9 994 aa3.19□□□□□ -1.9
CD44-212ENST00000524922 WAPLQ7Z5K2 1190 aa3.19□□□□□ -1.9
CD44-212ENST00000524922 IGDCC3Q8IVU1 814 aa3.19□□□□□ -1.9
CD44-212ENST00000524922 SIRT2Q8IXJ6 389 aa3.19□□□□□ -1.9
CD44-212ENST00000524922 FCRL2Q96LA5 508 aaPredicted RBP3.19□□□□□ -1.9
CD44-212ENST00000524922 SLC9A7Q96T83 725 aa3.19□□□□□ -1.9
CD44-212ENST00000524922 NT5C1AQ9BXI3 368 aa3.19□□□□□ -1.9
CD44-212ENST00000524922 XYLT2Q9H1B5 865 aa3.19□□□□□ -1.9
CD44-212ENST00000524922 TNFRSF12AQ9NP84 129 aa3.19□□□□□ -1.9
CD44-212ENST00000524922 KLHL14Q9P2G3 628 aa3.19□□□□□ -1.9
CD44-212ENST00000524922 KCTD3Q9Y597 815 aa3.19□□□□□ -1.9
CD44-212ENST00000524922 NCAPD3P42695 1498 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 B8ZZF3 427 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 C9IYK1 514 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 N4BP3O15049 544 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 PI3P19957 117 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 FBLN1P23142 703 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 BMP8BP34820 402 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 PDE6BP35913 854 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 CDR1P51861 262 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 PCBP3P57721 371 aaKnown RBP3.18□□□□□ -1.9
CD44-212ENST00000524922 RAD51AP2Q09MP3 1159 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 CBX2Q14781 532 aaPredicted RBP3.18□□□□□ -1.9
CD44-212ENST00000524922 CLEC16AQ2KHT3 1053 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 ADGRF1Q5T601 910 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 CEP128Q6ZU80 1094 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 PPFIBP1Q86W92 1011 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 SLC6A18Q96N87 628 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 SRRTQ9BXP5 876 aaKnown RBP3.18□□□□□ -1.9
CD44-212ENST00000524922 MRS2Q9HD23 443 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 PRR13Q9NZ81 148 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 TNFRSF10DQ9UBN6 386 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 ACSL6Q9UKU0 697 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 GPR55Q9Y2T6 319 aaPredicted RBP3.18□□□□□ -1.9
CD44-212ENST00000524922 PCDHA5Q9Y5H7 936 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 IRS2Q9Y4H2 1338 aa3.18□□□□□ -1.9
CD44-212ENST00000524922 ZCCHC6Q5VYS8 1495 aaKnown RBP3.17□□□□□ -1.9
CD44-212ENST00000524922 FKTNO75072 461 aa3.17□□□□□ -1.9
CD44-212ENST00000524922 CLEC3AO75596 197 aa3.17□□□□□ -1.9
CD44-212ENST00000524922 MSL3P1P0C860 447 aa3.17□□□□□ -1.9
CD44-212ENST00000524922 PDIA4P13667 645 aaKnown RBP3.17□□□□□ -1.9
CD44-212ENST00000524922 VAV1P15498 845 aa3.17□□□□□ -1.9
CD44-212ENST00000524922 IGFBP6P24592 240 aaPredicted RBP3.17□□□□□ -1.9
CD44-212ENST00000524922 CTSWP56202 376 aa3.17□□□□□ -1.9
CD44-212ENST00000524922 RTP1P59025 263 aa3.17□□□□□ -1.9
CD44-212ENST00000524922 SRSF3P84103 164 aaKnown RBP3.17□□□□□ -1.9
CD44-212ENST00000524922 AUHQ13825 339 aaKnown RBP3.17□□□□□ -1.9
CD44-212ENST00000524922 CCDC27Q2M243 656 aa3.17□□□□□ -1.9
CD44-212ENST00000524922 INTS3Q68E01 1043 aaKnown RBP3.17□□□□□ -1.9
CD44-212ENST00000524922 CRTC3Q6UUV7 619 aa3.17□□□□□ -1.9
CD44-212ENST00000524922 GK5Q6ZS86 529 aa3.17□□□□□ -1.9
CD44-212ENST00000524922 FAM129CQ86XR2 697 aa3.17□□□□□ -1.9
CD44-212ENST00000524922 TAB3Q8N5C8 712 aaPredicted RBP3.17□□□□□ -1.9
CD44-212ENST00000524922 TP53I13Q8NBR0 393 aaPredicted RBP3.17□□□□□ -1.9
CD44-212ENST00000524922 SIGLEC10Q96LC7 697 aa3.17□□□□□ -1.9
CD44-212ENST00000524922 CHST7Q9NS84 486 aa3.17□□□□□ -1.9
CD44-212ENST00000524922 GFOD1Q9NXC2 390 aa3.17□□□□□ -1.9
CD44-212ENST00000524922 RTEL1Q9NZ71 1219 aa3.17□□□□□ -1.9
CD44-212ENST00000524922 GGT7Q9UJ14 662 aa3.17□□□□□ -1.9
CD44-212ENST00000524922 CNOT6Q9ULM6 557 aaKnown RBP3.17□□□□□ -1.9
CD44-212ENST00000524922 ZNRF3Q9ULT6 936 aa3.17□□□□□ -1.9
CD44-212ENST00000524922 PLA2G2DQ9UNK4 145 aa3.17□□□□□ -1.9
CD44-212ENST00000524922 BMP7P18075 431 aa3.16□□□□□ -1.9
CD44-212ENST00000524922 MVKQ03426 396 aa3.16□□□□□ -1.9
CD44-212ENST00000524922 APOBRQ0VD83 1088 aa3.16□□□□□ -1.9
CD44-212ENST00000524922 MLECQ14165 292 aa3.16□□□□□ -1.9
CD44-212ENST00000524922 ZYXQ15942 572 aaKnown RBP3.16□□□□□ -1.9
CD44-212ENST00000524922 ANKRD39Q53RE8 183 aa3.16□□□□□ -1.9
CD44-212ENST00000524922 HS2ST1Q7LGA3 356 aa3.16□□□□□ -1.9
CD44-212ENST00000524922 LDHDQ86WU2 507 aa3.16□□□□□ -1.9
CD44-212ENST00000524922 MZB1Q8WU39 189 aa3.16□□□□□ -1.9
CD44-212ENST00000524922 JMJD8Q96S16 334 aa3.16□□□□□ -1.9
CD44-212ENST00000524922 SLC12A9Q9BXP2 914 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms