RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 SLC5A4Q9NY91 659 aa24.68■■□□□ 1.54
VPS28-203ENST00000524521 CTNNA3Q9UI47 895 aa24.68■■□□□ 1.54
VPS28-203ENST00000524521 COBLO75128 1261 aa24.67■■□□□ 1.54
VPS28-203ENST00000524521 CAPN2P17655 700 aa24.67■■□□□ 1.54
VPS28-203ENST00000524521 CHMLP26374 656 aa24.67■■□□□ 1.54
VPS28-203ENST00000524521 CHURC1Q8WUH1 139 aa24.67■■□□□ 1.54
VPS28-203ENST00000524521 MMP19Q99542 508 aa24.67■■□□□ 1.54
VPS28-203ENST00000524521 TEX13BQ9BXU2 312 aa24.67■■□□□ 1.54
VPS28-203ENST00000524521 CRISPLD2Q9H0B8 497 aa24.67■■□□□ 1.54
VPS28-203ENST00000524521 FARP2O94887 1054 aaPredicted RBP24.66■■□□□ 1.54
VPS28-203ENST00000524521 CCND3P30281 292 aaPredicted RBP24.66■■□□□ 1.54
VPS28-203ENST00000524521 COPB2P35606 906 aa24.66■■□□□ 1.54
VPS28-203ENST00000524521 NOVP48745 357 aa24.66■■□□□ 1.54
VPS28-203ENST00000524521 STAT2P52630 851 aa24.66■■□□□ 1.54
VPS28-203ENST00000524521 IMMTQ16891 758 aaKnown RBP24.66■■□□□ 1.54
VPS28-203ENST00000524521 SNRNP48Q6IEG0 339 aaKnown RBP24.66■■□□□ 1.54
VPS28-203ENST00000524521 RCSD1Q6JBY9 416 aa24.66■■□□□ 1.54
VPS28-203ENST00000524521 KCTD1Q719H9 257 aa24.66■■□□□ 1.54
VPS28-203ENST00000524521 ESR2Q92731 530 aa24.66■■□□□ 1.54
VPS28-203ENST00000524521 RAVER2Q9HCJ3 691 aaKnown RBP24.66■■□□□ 1.54
VPS28-203ENST00000524521 TOP1P11387 765 aaKnown RBP24.65■■□□□ 1.54
VPS28-203ENST00000524521 CYP2C19P33261 490 aa24.65■■□□□ 1.54
VPS28-203ENST00000524521 KCTD2Q14681 263 aa24.65■■□□□ 1.54
VPS28-203ENST00000524521 CENPQQ7L2Z9 268 aaPredicted RBP24.65■■□□□ 1.54
VPS28-203ENST00000524521 FAM160B2Q86V87 743 aa24.65■■□□□ 1.54
VPS28-203ENST00000524521 TMEM47Q9BQJ4 181 aa24.65■■□□□ 1.54
VPS28-203ENST00000524521 SLC38A10Q9HBR0 1119 aa24.65■■□□□ 1.54
VPS28-203ENST00000524521 NEDD4P46934 1319 aa24.64■■□□□ 1.54
VPS28-203ENST00000524521 PRPF38BQ5VTL8 546 aaKnown RBP24.64■■□□□ 1.54
VPS28-203ENST00000524521 UBE2Q1Q7Z7E8 422 aa24.64■■□□□ 1.54
VPS28-203ENST00000524521 RIPK3Q9Y572 518 aa24.64■■□□□ 1.54
VPS28-203ENST00000524521 RAD50Q92878 1312 aa24.63■■□□□ 1.53
VPS28-203ENST00000524521 ATP2A1O14983 1001 aa24.63■■□□□ 1.53
VPS28-203ENST00000524521 PGK2P07205 417 aa24.63■■□□□ 1.53
VPS28-203ENST00000524521 CCDC96Q2M329 555 aa24.63■■□□□ 1.53
VPS28-203ENST00000524521 OLFML2BQ68BL8 750 aa24.63■■□□□ 1.53
VPS28-203ENST00000524521 RASGRP2Q7LDG7 609 aa24.63■■□□□ 1.53
VPS28-203ENST00000524521 TTC14Q96N46 770 aa24.63■■□□□ 1.53
VPS28-203ENST00000524521 ZKSCAN3Q9BRR0 538 aa24.63■■□□□ 1.53
VPS28-203ENST00000524521 BRCA2P51587 3418 aa24.63■■□□□ 1.53
VPS28-203ENST00000524521 KDM4AO75164 1064 aa24.62■■□□□ 1.53
VPS28-203ENST00000524521 FDX1P10109 184 aa24.62■■□□□ 1.53
VPS28-203ENST00000524521 CNGA1P29973 690 aa24.62■■□□□ 1.53
VPS28-203ENST00000524521 DCAF4Q8WV16 495 aa24.62■■□□□ 1.53
VPS28-203ENST00000524521 ZNF236Q9UL36 1845 aa24.62■■□□□ 1.53
VPS28-203ENST00000524521 ZNFX1Q9P2E3 1918 aaKnown RBP24.62■■□□□ 1.53
VPS28-203ENST00000524521 B4E1Z4 1266 aa24.61■■□□□ 1.53
VPS28-203ENST00000524521 PLA2G6O60733 806 aa24.61■■□□□ 1.53
VPS28-203ENST00000524521 DPF3Q92784 378 aa24.61■■□□□ 1.53
VPS28-203ENST00000524521 PAWRQ96IZ0 340 aaKnown RBP24.61■■□□□ 1.53
VPS28-203ENST00000524521 MAML3Q96JK9 1138 aa24.61■■□□□ 1.53
VPS28-203ENST00000524521 HTATIP2Q9BUP3 242 aa24.61■■□□□ 1.53
VPS28-203ENST00000524521 IGHA2P01877 340 aa24.6■■□□□ 1.53
VPS28-203ENST00000524521 OAZ1P54368 228 aa24.6■■□□□ 1.53
VPS28-203ENST00000524521 PTH1RQ03431 593 aa24.6■■□□□ 1.53
VPS28-203ENST00000524521 IQCA1Q86XH1 822 aa24.6■■□□□ 1.53
VPS28-203ENST00000524521 ANKLE1Q8NAG6 615 aa24.6■■□□□ 1.53
VPS28-203ENST00000524521 DDX11Q96FC9 970 aa24.6■■□□□ 1.53
VPS28-203ENST00000524521 OGDHLQ9ULD0 1010 aa24.6■■□□□ 1.53
VPS28-203ENST00000524521 SGSM2O43147 1006 aa24.59■■□□□ 1.53
VPS28-203ENST00000524521 NT5C2P49902 561 aa24.59■■□□□ 1.53
VPS28-203ENST00000524521 SNAP25P60880 206 aa24.59■■□□□ 1.53
VPS28-203ENST00000524521 LHX8Q68G74 356 aa24.59■■□□□ 1.53
VPS28-203ENST00000524521 TTBK2Q6IQ55 1244 aa24.59■■□□□ 1.53
VPS28-203ENST00000524521 SKAP1Q86WV1 359 aa24.59■■□□□ 1.53
VPS28-203ENST00000524521 TRPV1Q8NER1 839 aa24.59■■□□□ 1.53
VPS28-203ENST00000524521 DIS3LQ8TF46 1054 aaKnown RBP24.59■■□□□ 1.53
VPS28-203ENST00000524521 KRT23Q9C075 422 aa24.59■■□□□ 1.53
VPS28-203ENST00000524521 GPCPD1Q9NPB8 672 aa24.59■■□□□ 1.53
VPS28-203ENST00000524521 ZSWIM5Q9P217 1185 aa24.59■■□□□ 1.53
VPS28-203ENST00000524521 PRR12Q9ULL5 1215 aa24.59■■□□□ 1.53
VPS28-203ENST00000524521 LAMA4Q16363 1823 aa24.58■■□□□ 1.53
VPS28-203ENST00000524521 ZNF792Q3KQV3 632 aa24.58■■□□□ 1.53
VPS28-203ENST00000524521 CCDC178Q5BJE1 867 aa24.58■■□□□ 1.53
VPS28-203ENST00000524521 NECAB2Q7Z6G3 386 aa24.58■■□□□ 1.53
VPS28-203ENST00000524521 DGKHQ86XP1 1220 aa24.58■■□□□ 1.53
VPS28-203ENST00000524521 AGBL1Q96MI9 1066 aa24.58■■□□□ 1.53
VPS28-203ENST00000524521 CNNM2Q9H8M5 875 aa24.58■■□□□ 1.53
VPS28-203ENST00000524521 HOMER2Q9NSB8 354 aa24.58■■□□□ 1.53
VPS28-203ENST00000524521 FBXO40Q9UH90 709 aa24.58■■□□□ 1.53
VPS28-203ENST00000524521 FRMPD2Q68DX3 1309 aaPredicted RBP24.58■■□□□ 1.52
VPS28-203ENST00000524521 CYBAP13498 195 aa24.57■■□□□ 1.52
VPS28-203ENST00000524521 SLC16A2P36021 539 aa24.57■■□□□ 1.52
VPS28-203ENST00000524521 PRAMEF19Q5SWL8 479 aa24.57■■□□□ 1.52
VPS28-203ENST00000524521 CCDC174Q6PII3 467 aa24.57■■□□□ 1.52
VPS28-203ENST00000524521 ANKRD35Q8N283 1001 aa24.57■■□□□ 1.52
VPS28-203ENST00000524521 CHST13Q8NET6 341 aa24.57■■□□□ 1.52
VPS28-203ENST00000524521 DIS3Q9Y2L1 958 aaKnown RBP24.57■■□□□ 1.52
VPS28-203ENST00000524521 PDHBP11177 359 aa24.56■■□□□ 1.52
VPS28-203ENST00000524521 CCDC136Q96JN2 1154 aa24.56■■□□□ 1.52
VPS28-203ENST00000524521 ZSCAN10Q96SZ4 725 aaPredicted RBP24.56■■□□□ 1.52
VPS28-203ENST00000524521 DDX20Q9UHI6 824 aaKnown RBP24.56■■□□□ 1.52
VPS28-203ENST00000524521 U3KPZ7 1027 aaPredicted RBP24.56■■□□□ 1.52
VPS28-203ENST00000524521 ZNF536O15090 1300 aa24.56■■□□□ 1.52
VPS28-203ENST00000524521 MNX1P50219 401 aaPredicted RBP24.55■■□□□ 1.52
VPS28-203ENST00000524521 BTNL9Q6UXG8 535 aa24.55■■□□□ 1.52
VPS28-203ENST00000524521 TINF2Q9BSI4 451 aa24.55■■□□□ 1.52
VPS28-203ENST00000524521 KAT14Q9H8E8 782 aa24.55■■□□□ 1.52
VPS28-203ENST00000524521 MSCO60682 206 aa24.54■■□□□ 1.52
VPS28-203ENST00000524521 ALAS1P13196 640 aa24.54■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms