RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 FAM43AQ8N2R8 423 aa18.92■□□□□ 0.62
LSM1-204ENST00000522515 FEM1BQ9UK73 627 aa18.92■□□□□ 0.62
LSM1-204ENST00000522515 WDR33Q9C0J8 1336 aaKnown RBP18.91■□□□□ 0.62
LSM1-204ENST00000522515 CYTH3O43739 400 aa18.91■□□□□ 0.62
LSM1-204ENST00000522515 PLA2G6O60733 806 aa18.91■□□□□ 0.62
LSM1-204ENST00000522515 PPFIA3O75145 1194 aa18.91■□□□□ 0.62
LSM1-204ENST00000522515 INHBEP58166 350 aa18.91■□□□□ 0.62
LSM1-204ENST00000522515 FUT2Q10981 343 aa18.91■□□□□ 0.62
LSM1-204ENST00000522515 SAMD1Q6SPF0 538 aaPredicted RBP18.91■□□□□ 0.62
LSM1-204ENST00000522515 ANKRD23Q86SG2 305 aa18.91■□□□□ 0.62
LSM1-204ENST00000522515 CHURC1Q8WUH1 139 aa18.91■□□□□ 0.62
LSM1-204ENST00000522515 PDHXO00330 501 aa18.9■□□□□ 0.62
LSM1-204ENST00000522515 IGF2BP3O00425 579 aaKnown RBP eCLIP18.9■□□□□ 0.62
LSM1-204ENST00000522515 CPLX1O14810 134 aa18.9■□□□□ 0.62
LSM1-204ENST00000522515 CTDNEP1O95476 244 aa18.9■□□□□ 0.62
LSM1-204ENST00000522515 FAM160B2Q86V87 743 aa18.9■□□□□ 0.62
LSM1-204ENST00000522515 ADGRF4Q8IZF3 695 aa18.9■□□□□ 0.62
LSM1-204ENST00000522515 KIFC2Q96AC6 838 aa18.9■□□□□ 0.62
LSM1-204ENST00000522515 SLF1Q9BQI6 1058 aa18.9■□□□□ 0.62
LSM1-204ENST00000522515 LZTS2Q9BRK4 669 aa18.9■□□□□ 0.62
LSM1-204ENST00000522515 ASCC2Q9H1I8 757 aaPredicted RBP18.9■□□□□ 0.62
LSM1-204ENST00000522515 VAT1LQ9HCJ6 419 aa18.9■□□□□ 0.62
LSM1-204ENST00000522515 PRR12Q9ULL5 1215 aa18.9■□□□□ 0.62
LSM1-204ENST00000522515 PARP14Q460N5 1801 aa18.9■□□□□ 0.62
LSM1-204ENST00000522515 RLFQ13129 1914 aa18.9■□□□□ 0.62
LSM1-204ENST00000522515 DHX16O60231 1041 aaKnown RBP18.89■□□□□ 0.62
LSM1-204ENST00000522515 ANP32AP39687 249 aaKnown RBP18.89■□□□□ 0.62
LSM1-204ENST00000522515 TM4SF4P48230 202 aa18.89■□□□□ 0.62
LSM1-204ENST00000522515 SREBF2Q12772 1141 aa18.89■□□□□ 0.62
LSM1-204ENST00000522515 PABPC4Q13310 644 aaKnown RBP eCLIP18.89■□□□□ 0.622e-7■□□□□ 10.4
LSM1-204ENST00000522515 COG2Q14746 738 aa18.89■□□□□ 0.62
LSM1-204ENST00000522515 SYDE2Q5VT97 1194 aa18.89■□□□□ 0.62
LSM1-204ENST00000522515 PRPF38AQ8NAV1 312 aaKnown RBP18.89■□□□□ 0.62
LSM1-204ENST00000522515 SPZ1Q9BXG8 430 aa18.89■□□□□ 0.62
LSM1-204ENST00000522515 RIOX1Q9H6W3 641 aa18.89■□□□□ 0.62
LSM1-204ENST00000522515 JMJD4Q9H9V9 463 aa18.89■□□□□ 0.62
LSM1-204ENST00000522515 PPP1R9AQ9ULJ8 1098 aa18.89■□□□□ 0.62
LSM1-204ENST00000522515 CNTNAP5Q8WYK1 1306 aa18.89■□□□□ 0.61
LSM1-204ENST00000522515 IFNAR1P17181 557 aa18.89■□□□□ 0.61
LSM1-204ENST00000522515 SMARCA1P28370 1054 aa18.89■□□□□ 0.61
LSM1-204ENST00000522515 DSG3P32926 999 aa18.89■□□□□ 0.61
LSM1-204ENST00000522515 IRX3P78415 501 aaPredicted RBP18.89■□□□□ 0.61
LSM1-204ENST00000522515 CUL4AQ13619 759 aa18.89■□□□□ 0.61
LSM1-204ENST00000522515 IFNL1Q8IU54 200 aa18.89■□□□□ 0.61
LSM1-204ENST00000522515 NSUN7Q8NE18 718 aaKnown RBP18.89■□□□□ 0.61
LSM1-204ENST00000522515 PHKBQ93100 1093 aa18.89■□□□□ 0.61
LSM1-204ENST00000522515 P2RX7Q99572 595 aaKnown RBP18.89■□□□□ 0.61
LSM1-204ENST00000522515 SLC45A1Q9Y2W3 748 aa18.89■□□□□ 0.61
LSM1-204ENST00000522515 SPDYE16A6NNV3 312 aaPredicted RBP18.88■□□□□ 0.61
LSM1-204ENST00000522515 OSBPP22059 807 aa18.88■□□□□ 0.61
LSM1-204ENST00000522515 SNAP25P60880 206 aa18.88■□□□□ 0.61
LSM1-204ENST00000522515 CPLX2Q6PUV4 134 aaKnown RBP18.88■□□□□ 0.61
LSM1-204ENST00000522515 PIBF1Q8WXW3 757 aa18.88■□□□□ 0.61
LSM1-204ENST00000522515 ATG4CQ96DT6 458 aa18.88■□□□□ 0.61
LSM1-204ENST00000522515 hCG_1642624A0A1W2PR95 340 aa18.87■□□□□ 0.61
LSM1-204ENST00000522515 JAK2O60674 1132 aa18.87■□□□□ 0.61
LSM1-204ENST00000522515 CYP2C8P10632 490 aa18.87■□□□□ 0.61
LSM1-204ENST00000522515 BECN1Q14457 450 aa18.87■□□□□ 0.61
LSM1-204ENST00000522515 POTEEQ6S8J3 1075 aa18.87■□□□□ 0.61
LSM1-204ENST00000522515 PIGSQ96S52 555 aa18.87■□□□□ 0.61
LSM1-204ENST00000522515 HOXC10Q9NYD6 342 aa18.87■□□□□ 0.61
LSM1-204ENST00000522515 BAZ2BQ9UIF8 2168 aaKnown RBP18.87■□□□□ 0.61
LSM1-204ENST00000522515 MYPNQ86TC9 1320 aa18.87■□□□□ 0.61
LSM1-204ENST00000522515 CDKL5O76039 1030 aa18.86■□□□□ 0.61
LSM1-204ENST00000522515 MAP2K2P36507 400 aa18.86■□□□□ 0.61
LSM1-204ENST00000522515 HERVK_113P62684 666 aa18.86■□□□□ 0.61
LSM1-204ENST00000522515 HOMER1Q86YM7 354 aa18.86■□□□□ 0.61
LSM1-204ENST00000522515 MTMR8Q96EF0 704 aa18.86■□□□□ 0.61
LSM1-204ENST00000522515 LLPHQ9BRT6 129 aaKnown RBP18.86■□□□□ 0.61
LSM1-204ENST00000522515 SLC26A6Q9BXS9 759 aa18.86■□□□□ 0.61
LSM1-204ENST00000522515 PNMA3Q9UL41 463 aa18.86■□□□□ 0.61
LSM1-204ENST00000522515 ADAMTS5Q9UNA0 930 aa18.86■□□□□ 0.61
LSM1-204ENST00000522515 V9GY48 417 aaPredicted RBP18.86■□□□□ 0.61
LSM1-204ENST00000522515 PTPDC1A2A3K4 754 aa18.85■□□□□ 0.61
LSM1-204ENST00000522515 VWA5AO00534 786 aa18.85■□□□□ 0.61
LSM1-204ENST00000522515 FMNL1O95466 1100 aaPredicted RBP18.85■□□□□ 0.61
LSM1-204ENST00000522515 RNF26Q9BY78 433 aaPredicted RBP18.85■□□□□ 0.61
LSM1-204ENST00000522515 RANBP17Q9H2T7 1088 aaKnown RBP18.85■□□□□ 0.61
LSM1-204ENST00000522515 ZCCHC17Q9NP64 241 aaKnown RBP18.85■□□□□ 0.61
LSM1-204ENST00000522515 PRPF3O43395 683 aaKnown RBP18.85■□□□□ 0.61
LSM1-204ENST00000522515 SSRP1Q08945 709 aaKnown RBP18.85■□□□□ 0.61
LSM1-204ENST00000522515 CDC37Q16543 378 aaPredicted RBP18.85■□□□□ 0.61
LSM1-204ENST00000522515 OTUD7BQ6GQQ9 843 aa18.85■□□□□ 0.61
LSM1-204ENST00000522515 LBX2Q6XYB7 198 aa18.85■□□□□ 0.61
LSM1-204ENST00000522515 REM2Q8IYK8 340 aaPredicted RBP18.85■□□□□ 0.61
LSM1-204ENST00000522515 SMARCC2Q8TAQ2 1214 aa18.85■□□□□ 0.61
LSM1-204ENST00000522515 RRP36Q96EU6 259 aaKnown RBP18.85■□□□□ 0.61
LSM1-204ENST00000522515 DDX11Q96FC9 970 aa18.85■□□□□ 0.61
LSM1-204ENST00000522515 SLC38A10Q9HBR0 1119 aa18.85■□□□□ 0.61
LSM1-204ENST00000522515 FOXD4L1Q9NU39 408 aa18.85■□□□□ 0.61
LSM1-204ENST00000522515 THSD7BQ9C0I4 1608 aa18.85■□□□□ 0.61
LSM1-204ENST00000522515 ZBTB5O15062 677 aa18.84■□□□□ 0.61
LSM1-204ENST00000522515 PEX10O60683 326 aa18.84■□□□□ 0.61
LSM1-204ENST00000522515 FDPSP14324 419 aaKnown RBP18.84■□□□□ 0.61
LSM1-204ENST00000522515 SLC4A3P48751 1232 aa18.84■□□□□ 0.61
LSM1-204ENST00000522515 QRICH1Q2TAL8 776 aa18.84■□□□□ 0.61
LSM1-204ENST00000522515 TRIM22Q8IYM9 498 aa18.84■□□□□ 0.61
LSM1-204ENST00000522515 REPS2Q8NFH8 660 aa18.84■□□□□ 0.61
LSM1-204ENST00000522515 SMCR8Q8TEV9 937 aaPredicted RBP18.84■□□□□ 0.61
LSM1-204ENST00000522515 PARK7Q99497 189 aaKnown RBP18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms