RNA–Protein interactions for RNA: ENST00000519219.1

TRIM35-202, Transcript of tripartite motif containing 35, humanhuman

TSL 2

Gene TRIM35, Length 423 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35-202ENST00000519219 RNPC3Q96LT9 517 aaKnown RBP10.5□□□□□ -0.73
TRIM35-202ENST00000519219 STRBPQ96SI9 672 aaKnown RBP10.5□□□□□ -0.73
TRIM35-202ENST00000519219 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.5□□□□□ -0.73
TRIM35-202ENST00000519219 EPB41L4AQ9HCS5 686 aaPredicted RBP10.5□□□□□ -0.73
TRIM35-202ENST00000519219 GOPCQ9HD26 462 aa10.5□□□□□ -0.73
TRIM35-202ENST00000519219 DDX19BQ9UMR2 479 aa10.5□□□□□ -0.73
TRIM35-202ENST00000519219 TTC28Q96AY4 2481 aa10.5□□□□□ -0.73
TRIM35-202ENST00000519219 DNAJC25-GNG10A0A024R161 153 aa10.49□□□□□ -0.73
TRIM35-202ENST00000519219 GSG1L2A8MUP6 293 aa10.49□□□□□ -0.73
TRIM35-202ENST00000519219 KIAA0355O15063 1070 aa10.49□□□□□ -0.73
TRIM35-202ENST00000519219 PRDM1O75626 825 aa10.49□□□□□ -0.73
TRIM35-202ENST00000519219 AKR1A1P14550 325 aa10.49□□□□□ -0.73
TRIM35-202ENST00000519219 SMAD3P84022 425 aaKnown RBP10.49□□□□□ -0.73
TRIM35-202ENST00000519219 FAAP100Q0VG06 881 aa10.49□□□□□ -0.73
TRIM35-202ENST00000519219 SNRNP48Q6IEG0 339 aaKnown RBP10.49□□□□□ -0.73
TRIM35-202ENST00000519219 CCSAPQ6IQ19 270 aaPredicted RBP10.49□□□□□ -0.73
TRIM35-202ENST00000519219 RNF180Q86T96 592 aa10.49□□□□□ -0.73
TRIM35-202ENST00000519219 CPXCR1Q8N123 301 aa10.49□□□□□ -0.73
TRIM35-202ENST00000519219 USP38Q8NB14 1042 aa10.49□□□□□ -0.73
TRIM35-202ENST00000519219 OSBP2Q969R2 916 aa10.49□□□□□ -0.73
TRIM35-202ENST00000519219 CHMP4CQ96CF2 233 aa10.49□□□□□ -0.73
TRIM35-202ENST00000519219 SLF1Q9BQI6 1058 aa10.49□□□□□ -0.73
TRIM35-202ENST00000519219 DIS3Q9Y2L1 958 aaKnown RBP10.49□□□□□ -0.73
TRIM35-202ENST00000519219 DDX49Q9Y6V7 483 aaKnown RBP10.49□□□□□ -0.73
TRIM35-202ENST00000519219 IGKV6D-41A0A0C4DH26 115 aa10.48□□□□□ -0.73
TRIM35-202ENST00000519219 MINDY4BA8MYZ0 360 aa10.48□□□□□ -0.73
TRIM35-202ENST00000519219 F5H6K3 240 aa10.48□□□□□ -0.73
TRIM35-202ENST00000519219 M0R2C6 588 aa10.48□□□□□ -0.73
TRIM35-202ENST00000519219 RAG1P15918 1043 aa10.48□□□□□ -0.73
TRIM35-202ENST00000519219 ACLYP53396 1101 aa10.48□□□□□ -0.73
TRIM35-202ENST00000519219 KLRC3Q07444 240 aa10.48□□□□□ -0.73
TRIM35-202ENST00000519219 KCNA10Q16322 511 aa10.48□□□□□ -0.73
TRIM35-202ENST00000519219 RASGRP2Q7LDG7 609 aa10.48□□□□□ -0.73
TRIM35-202ENST00000519219 LRRC47Q8N1G4 583 aaKnown RBP10.48□□□□□ -0.73
TRIM35-202ENST00000519219 KLHDC9Q8NEP7 349 aa10.48□□□□□ -0.73
TRIM35-202ENST00000519219 TEX13BQ9BXU2 312 aa10.48□□□□□ -0.73
TRIM35-202ENST00000519219 RAVER2Q9HCJ3 691 aaKnown RBP10.48□□□□□ -0.73
TRIM35-202ENST00000519219 ARPP21Q9UBL0 812 aaPredicted RBP10.48□□□□□ -0.73
TRIM35-202ENST00000519219 NRBP1Q9UHY1 535 aa10.48□□□□□ -0.73
TRIM35-202ENST00000519219 ZHX1Q9UKY1 873 aaPredicted RBP10.48□□□□□ -0.73
TRIM35-202ENST00000519219 TACC3Q9Y6A5 838 aa10.48□□□□□ -0.73
TRIM35-202ENST00000519219 GRXCR1A8MXD5 290 aa10.47□□□□□ -0.73
TRIM35-202ENST00000519219 FOSL2P15408 326 aa10.47□□□□□ -0.73
TRIM35-202ENST00000519219 FPGSQ05932 587 aa10.47□□□□□ -0.73
TRIM35-202ENST00000519219 GRIN2CQ14957 1233 aa10.47□□□□□ -0.73
TRIM35-202ENST00000519219 SBK1Q52WX2 424 aa10.47□□□□□ -0.73
TRIM35-202ENST00000519219 C16orf59Q7L2K0 433 aa10.47□□□□□ -0.73
TRIM35-202ENST00000519219 AMOTL1Q8IY63 956 aa10.47□□□□□ -0.73
TRIM35-202ENST00000519219 KIFC2Q96AC6 838 aa10.47□□□□□ -0.73
TRIM35-202ENST00000519219 DDRGK1Q96HY6 314 aa10.47□□□□□ -0.73
TRIM35-202ENST00000519219 LRRCC1Q9C099 1032 aa10.47□□□□□ -0.73
TRIM35-202ENST00000519219 PRDM6Q9NQX0 595 aa10.47□□□□□ -0.73
TRIM35-202ENST00000519219 STARD7Q9NQZ5 370 aa10.47□□□□□ -0.73
TRIM35-202ENST00000519219 TMEM39AQ9NV64 488 aa10.47□□□□□ -0.73
TRIM35-202ENST00000519219 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.47□□□□□ -0.73
TRIM35-202ENST00000519219 NYAP2Q9P242 653 aa10.47□□□□□ -0.73
TRIM35-202ENST00000519219 CLIP2Q9UDT6 1046 aa10.47□□□□□ -0.73
TRIM35-202ENST00000519219 TBX21Q9UL17 535 aa10.47□□□□□ -0.73
TRIM35-202ENST00000519219 CNPY2Q9Y2B0 182 aa10.47□□□□□ -0.73
TRIM35-202ENST00000519219 CHD9Q3L8U1 2897 aa10.46□□□□□ -0.73
TRIM35-202ENST00000519219 CTAGE5O15320 804 aa10.46□□□□□ -0.73
TRIM35-202ENST00000519219 GPAA1O43292 621 aa10.46□□□□□ -0.73
TRIM35-202ENST00000519219 DNAJB2P25686 324 aa10.46□□□□□ -0.73
TRIM35-202ENST00000519219 PBX2P40425 430 aa10.46□□□□□ -0.73
TRIM35-202ENST00000519219 CNTN2Q02246 1040 aa10.46□□□□□ -0.73
TRIM35-202ENST00000519219 MAMDC4Q6UXC1 1216 aa10.46□□□□□ -0.73
TRIM35-202ENST00000519219 ANKRD33Q7Z3H0 272 aa10.46□□□□□ -0.73
TRIM35-202ENST00000519219 DDX11Q96FC9 970 aa10.46□□□□□ -0.73
TRIM35-202ENST00000519219 CEP95Q96GE4 821 aa10.46□□□□□ -0.73
TRIM35-202ENST00000519219 SEC62Q99442 399 aaKnown RBP10.46□□□□□ -0.73
TRIM35-202ENST00000519219 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.46□□□□□ -0.735e-8■■■■□ 21.4
TRIM35-202ENST00000519219 KATNBL1Q9H079 304 aa10.46□□□□□ -0.73
TRIM35-202ENST00000519219 MKNK2Q9HBH9 465 aa10.46□□□□□ -0.73
TRIM35-202ENST00000519219 HOMER2Q9NSB8 354 aa10.46□□□□□ -0.73
TRIM35-202ENST00000519219 ECHDC1Q9NTX5 307 aa10.46□□□□□ -0.73
TRIM35-202ENST00000519219 FAM184BQ9ULE4 1060 aa10.46□□□□□ -0.73
TRIM35-202ENST00000519219 SYNGAP1Q96PV0 1343 aa10.46□□□□□ -0.73
TRIM35-202ENST00000519219 SPTBN5Q9NRC6 3674 aaKnown RBP10.45□□□□□ -0.74
TRIM35-202ENST00000519219 SCN5AQ14524 2016 aa10.45□□□□□ -0.74
TRIM35-202ENST00000519219 ASTN1O14525 1302 aa10.45□□□□□ -0.74
TRIM35-202ENST00000519219 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.45□□□□□ -0.74
TRIM35-202ENST00000519219 ASGR1P07306 291 aa10.45□□□□□ -0.74
TRIM35-202ENST00000519219 C6orf222P0C671 652 aaPredicted RBP10.45□□□□□ -0.74
TRIM35-202ENST00000519219 MS4A1P11836 297 aa10.45□□□□□ -0.74
TRIM35-202ENST00000519219 COPB2P35606 906 aa10.45□□□□□ -0.74
TRIM35-202ENST00000519219 CDK7P50613 346 aa10.45□□□□□ -0.74
TRIM35-202ENST00000519219 SNAP25P60880 206 aa10.45□□□□□ -0.74
TRIM35-202ENST00000519219 BEX3Q00994 111 aa10.45□□□□□ -0.74
TRIM35-202ENST00000519219 ACVR2BQ13705 512 aa10.45□□□□□ -0.74
TRIM35-202ENST00000519219 CCDC144BQ3MJ40 725 aa10.45□□□□□ -0.74
TRIM35-202ENST00000519219 TMEM63BQ5T3F8 832 aa10.45□□□□□ -0.74
TRIM35-202ENST00000519219 ARMCX2Q7L311 632 aa10.45□□□□□ -0.74
TRIM35-202ENST00000519219 KBTBD3Q8NAB2 608 aa10.45□□□□□ -0.74
TRIM35-202ENST00000519219 PRPF38AQ8NAV1 312 aaKnown RBP10.45□□□□□ -0.74
TRIM35-202ENST00000519219 OTUD7AQ8TE49 926 aaPredicted RBP10.45□□□□□ -0.74
TRIM35-202ENST00000519219 APPBP2Q92624 585 aa10.45□□□□□ -0.74
TRIM35-202ENST00000519219 TSEN34Q9BSV6 310 aaKnown RBP10.45□□□□□ -0.74
TRIM35-202ENST00000519219 UPF3AQ9H1J1 476 aaKnown RBP10.45□□□□□ -0.74
TRIM35-202ENST00000519219 SLC38A10Q9HBR0 1119 aa10.45□□□□□ -0.74
TRIM35-202ENST00000519219 CHD7Q9P2D1 2997 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms