RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 ZBED4O75132 1171 aa13.57□□□□□ -0.24
VCAN-212ENST00000515397 KDM4AO75164 1064 aa13.57□□□□□ -0.24
VCAN-212ENST00000515397 FCER1AP12319 257 aa13.57□□□□□ -0.24
VCAN-212ENST00000515397 CNGA1P29973 690 aa13.57□□□□□ -0.24
VCAN-212ENST00000515397 SLC16A2P36021 539 aa13.57□□□□□ -0.24
VCAN-212ENST00000515397 ANO1Q5XXA6 986 aa13.57□□□□□ -0.24
VCAN-212ENST00000515397 RIOX2Q8IUF8 465 aa13.57□□□□□ -0.24
VCAN-212ENST00000515397 SHCBP1Q8NEM2 672 aa13.57□□□□□ -0.24
VCAN-212ENST00000515397 TRPV1Q8NER1 839 aa13.57□□□□□ -0.24
VCAN-212ENST00000515397 MMP19Q99542 508 aa13.57□□□□□ -0.24
VCAN-212ENST00000515397 DSCC1Q9BVC3 393 aa13.57□□□□□ -0.24
VCAN-212ENST00000515397 MROH8Q9H579 483 aa13.57□□□□□ -0.24
VCAN-212ENST00000515397 FRMPD2Q68DX3 1309 aaPredicted RBP13.57□□□□□ -0.24
VCAN-212ENST00000515397 STRNO43815 780 aa13.56□□□□□ -0.24
VCAN-212ENST00000515397 FARP2O94887 1054 aaPredicted RBP13.56□□□□□ -0.24
VCAN-212ENST00000515397 SLC25A27O95847 323 aa13.56□□□□□ -0.24
VCAN-212ENST00000515397 CCDC96Q2M329 555 aa13.56□□□□□ -0.24
VCAN-212ENST00000515397 MAP3K21Q5TCX8 1036 aa13.56□□□□□ -0.24
VCAN-212ENST00000515397 MFSD14CQ5VZR4 134 aa13.56□□□□□ -0.24
VCAN-212ENST00000515397 RCSD1Q6JBY9 416 aa13.56□□□□□ -0.24
VCAN-212ENST00000515397 CCDC174Q6PII3 467 aa13.56□□□□□ -0.24
VCAN-212ENST00000515397 DPF3Q92784 378 aa13.56□□□□□ -0.24
VCAN-212ENST00000515397 PAWRQ96IZ0 340 aaKnown RBP13.56□□□□□ -0.24
VCAN-212ENST00000515397 AGBL1Q96MI9 1066 aa13.56□□□□□ -0.24
VCAN-212ENST00000515397 SLC38A10Q9HBR0 1119 aa13.56□□□□□ -0.24
VCAN-212ENST00000515397 HOMER2Q9NSB8 354 aa13.56□□□□□ -0.24
VCAN-212ENST00000515397 PCDH10Q9P2E7 1040 aa13.56□□□□□ -0.24
VCAN-212ENST00000515397 TAF6LQ9Y6J9 622 aa13.56□□□□□ -0.24
VCAN-212ENST00000515397 ZMYM6O95789 1325 aa13.56□□□□□ -0.24
VCAN-212ENST00000515397 MYH4Q9Y623 1939 aa13.55□□□□□ -0.24
VCAN-212ENST00000515397 HOXC6P09630 235 aa13.55□□□□□ -0.24
VCAN-212ENST00000515397 TOP1P11387 765 aaKnown RBP13.55□□□□□ -0.24
VCAN-212ENST00000515397 IMMTQ16891 758 aaKnown RBP13.55□□□□□ -0.24
VCAN-212ENST00000515397 UBE2Q1Q7Z7E8 422 aa13.55□□□□□ -0.24
VCAN-212ENST00000515397 TRMT44Q8IYL2 757 aaKnown RBP13.55□□□□□ -0.24
VCAN-212ENST00000515397 ESR2Q92731 530 aa13.55□□□□□ -0.24
VCAN-212ENST00000515397 GMCL1Q96IK5 515 aa13.55□□□□□ -0.24
VCAN-212ENST00000515397 TEX13BQ9BXU2 312 aa13.55□□□□□ -0.24
VCAN-212ENST00000515397 CRISPLD2Q9H0B8 497 aa13.55□□□□□ -0.24
VCAN-212ENST00000515397 RNF41Q9H4P4 317 aaPredicted RBP13.55□□□□□ -0.24
VCAN-212ENST00000515397 ZSWIM5Q9P217 1185 aa13.55□□□□□ -0.24
VCAN-212ENST00000515397 NOVP48745 357 aa13.54□□□□□ -0.24
VCAN-212ENST00000515397 STAT2P52630 851 aa13.54□□□□□ -0.24
VCAN-212ENST00000515397 KCTD2Q14681 263 aa13.54□□□□□ -0.24
VCAN-212ENST00000515397 LHX8Q68G74 356 aa13.54□□□□□ -0.24
VCAN-212ENST00000515397 CENPQQ7L2Z9 268 aaPredicted RBP13.54□□□□□ -0.24
VCAN-212ENST00000515397 CHURC1Q8WUH1 139 aa13.54□□□□□ -0.24
VCAN-212ENST00000515397 DDX11Q96FC9 970 aa13.54□□□□□ -0.24
VCAN-212ENST00000515397 CPVLQ9H3G5 476 aa13.54□□□□□ -0.24
VCAN-212ENST00000515397 TCP11L1Q9NUJ3 509 aa13.54□□□□□ -0.24
VCAN-212ENST00000515397 CTNNA3Q9UI47 895 aa13.54□□□□□ -0.24
VCAN-212ENST00000515397 PRR12Q9ULL5 1215 aa13.54□□□□□ -0.24
VCAN-212ENST00000515397 SGSM2O43147 1006 aa13.53□□□□□ -0.24
VCAN-212ENST00000515397 MYCNP04198 464 aaPredicted RBP13.53□□□□□ -0.24
VCAN-212ENST00000515397 GOLGA8HP0CJ92 632 aa13.53□□□□□ -0.24
VCAN-212ENST00000515397 MNX1P50219 401 aaPredicted RBP13.53□□□□□ -0.24
VCAN-212ENST00000515397 PPP4R3BQ5MIZ7 849 aa13.53□□□□□ -0.24
VCAN-212ENST00000515397 FAM160B2Q86V87 743 aa13.53□□□□□ -0.24
VCAN-212ENST00000515397 RUFY2Q8WXA3 655 aa13.53□□□□□ -0.24
VCAN-212ENST00000515397 MAML3Q96JK9 1138 aa13.53□□□□□ -0.24
VCAN-212ENST00000515397 UBA5Q9GZZ9 404 aa13.53□□□□□ -0.24
VCAN-212ENST00000515397 SYNPO2Q9UMS6 1093 aa13.53□□□□□ -0.24
VCAN-212ENST00000515397 DDX49Q9Y6V7 483 aaKnown RBP13.53□□□□□ -0.24
VCAN-212ENST00000515397 ZNF536O15090 1300 aa13.53□□□□□ -0.24
VCAN-212ENST00000515397 COL11A1P12107 1806 aaPredicted RBP13.53□□□□□ -0.24
VCAN-212ENST00000515397 IGHA2P01877 340 aa13.52□□□□□ -0.25
VCAN-212ENST00000515397 CYP21A2P08686 494 aa13.52□□□□□ -0.25
VCAN-212ENST00000515397 PDHBP11177 359 aa13.52□□□□□ -0.25
VCAN-212ENST00000515397 ALAS1P13196 640 aa13.52□□□□□ -0.25
VCAN-212ENST00000515397 ZNF792Q3KQV3 632 aa13.52□□□□□ -0.25
VCAN-212ENST00000515397 PRPF38BQ5VTL8 546 aaKnown RBP13.52□□□□□ -0.25
VCAN-212ENST00000515397 CYB5R4Q7L1T6 521 aa13.52□□□□□ -0.25
VCAN-212ENST00000515397 CHST3Q7LGC8 479 aa13.52□□□□□ -0.25
VCAN-212ENST00000515397 ABRAQ8N0Z2 381 aa13.52□□□□□ -0.25
VCAN-212ENST00000515397 DCAF4Q8WV16 495 aa13.52□□□□□ -0.25
VCAN-212ENST00000515397 CCDC136Q96JN2 1154 aa13.52□□□□□ -0.25
VCAN-212ENST00000515397 ZSCAN10Q96SZ4 725 aaPredicted RBP13.52□□□□□ -0.25
VCAN-212ENST00000515397 OGDHLQ9ULD0 1010 aa13.52□□□□□ -0.25
VCAN-212ENST00000515397 PARP14Q460N5 1801 aa13.52□□□□□ -0.25
VCAN-212ENST00000515397 RBBP6Q7Z6E9 1792 aaKnown RBP13.51□□□□□ -0.25
VCAN-212ENST00000515397 A0A0G2JMZ2 1700 aa13.51□□□□□ -0.25
VCAN-212ENST00000515397 H0YGN5 161 aa13.51□□□□□ -0.25
VCAN-212ENST00000515397 ATP2A1O14983 1001 aa13.51□□□□□ -0.25
VCAN-212ENST00000515397 CYBAP13498 195 aa13.51□□□□□ -0.25
VCAN-212ENST00000515397 CNTN2Q02246 1040 aa13.51□□□□□ -0.25
VCAN-212ENST00000515397 MUM1L1Q5H9M0 696 aa13.51□□□□□ -0.25
VCAN-212ENST00000515397 SYDE2Q5VT97 1194 aa13.51□□□□□ -0.25
VCAN-212ENST00000515397 OLFML2BQ68BL8 750 aa13.51□□□□□ -0.25
VCAN-212ENST00000515397 ANKRD35Q8N283 1001 aa13.51□□□□□ -0.25
VCAN-212ENST00000515397 ENAHQ8N8S7 591 aaPredicted RBP13.51□□□□□ -0.25
VCAN-212ENST00000515397 TTC14Q96N46 770 aa13.51□□□□□ -0.25
VCAN-212ENST00000515397 TRERF1Q96PN7 1200 aa13.51□□□□□ -0.25
VCAN-212ENST00000515397 SLC5A4Q9NY91 659 aa13.51□□□□□ -0.25
VCAN-212ENST00000515397 PCP11498 1178 aaKnown RBP13.5□□□□□ -0.25
VCAN-212ENST00000515397 ZNF543Q08ER8 600 aa13.5□□□□□ -0.25
VCAN-212ENST00000515397 COL9A3Q14050 684 aaPredicted RBP13.5□□□□□ -0.25
VCAN-212ENST00000515397 GJC2Q5T442 439 aaPredicted RBP13.5□□□□□ -0.25
VCAN-212ENST00000515397 STOX1Q6ZVD7 989 aa13.5□□□□□ -0.25
VCAN-212ENST00000515397 NECAB2Q7Z6G3 386 aa13.5□□□□□ -0.25
VCAN-212ENST00000515397 IQCA1Q86XH1 822 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms