RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 GPKOWQ92917 476 aaPredicted RBP eCLIP16.81■□□□□ 0.281e-10■■■□□ 14.7
NUP54-217ENST00000514987 RRP36Q96EU6 259 aaKnown RBP16.81■□□□□ 0.28
NUP54-217ENST00000514987 AK8Q96MA6 479 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 PANX2Q96RD6 677 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 MED15Q96RN5 788 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 NAA15Q9BXJ9 866 aaKnown RBP16.81■□□□□ 0.28
NUP54-217ENST00000514987 COA1Q9GZY4 146 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 ZMYND12Q9H0C1 365 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 CUEDC2Q9H467 287 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 L2HGDHQ9H9P8 463 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 MAGEF1Q9HAY2 307 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 C6orf50Q9HD87 102 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 SAMSN1Q9NSI8 373 aaKnown RBP16.81■□□□□ 0.28
NUP54-217ENST00000514987 SNED1Q8TER0 1413 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 PLIN4Q96Q06 1357 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 VEGFAP15692 232 aaPredicted RBP16.81■□□□□ 0.28
NUP54-217ENST00000514987 STAT6P42226 847 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 IL17AQ16552 155 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 SLC4A8Q2Y0W8 1093 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 ZNF658Q5TYW1 1059 aaPredicted RBP16.81■□□□□ 0.28
NUP54-217ENST00000514987 GPR101Q96P66 508 aaPredicted RBP16.81■□□□□ 0.28
NUP54-217ENST00000514987 CCSER1Q9C0I3 900 aa16.81■□□□□ 0.28
NUP54-217ENST00000514987 SEC63Q9UGP8 760 aaKnown RBP16.81■□□□□ 0.28
NUP54-217ENST00000514987 LTBP1Q14766 1721 aa16.8■□□□□ 0.28
NUP54-217ENST00000514987 C6orf229H3BNL8 230 aa16.8■□□□□ 0.28
NUP54-217ENST00000514987 CYTH3O43739 400 aa16.8■□□□□ 0.28
NUP54-217ENST00000514987 CD44P16070 742 aaKnown RBP16.8■□□□□ 0.28
NUP54-217ENST00000514987 SOGA3Q5TF21 947 aa16.8■□□□□ 0.28
NUP54-217ENST00000514987 PPFIBP1Q86W92 1011 aa16.8■□□□□ 0.28
NUP54-217ENST00000514987 TMEM139Q8IV31 216 aa16.8■□□□□ 0.28
NUP54-217ENST00000514987 TC2NQ8N9U0 490 aa16.8■□□□□ 0.28
NUP54-217ENST00000514987 SLC44A5Q8NCS7 719 aa16.8■□□□□ 0.28
NUP54-217ENST00000514987 CCDC51Q96ER9 411 aa16.8■□□□□ 0.28
NUP54-217ENST00000514987 DISC1Q9NRI5 854 aa16.8■□□□□ 0.28
NUP54-217ENST00000514987 ADD3Q9UEY8 706 aaKnown RBP16.8■□□□□ 0.28
NUP54-217ENST00000514987 POLLQ9UGP5 575 aa16.8■□□□□ 0.28
NUP54-217ENST00000514987 ESYT2A0FGR8 921 aa16.79■□□□□ 0.28
NUP54-217ENST00000514987 AKR1B15C9JRZ8 316 aaPredicted RBP16.79■□□□□ 0.28
NUP54-217ENST00000514987 POLRMTO00411 1230 aaKnown RBP16.79■□□□□ 0.28
NUP54-217ENST00000514987 PPEF1O14829 653 aaPredicted RBP16.79■□□□□ 0.28
NUP54-217ENST00000514987 RPN1P04843 607 aaKnown RBP16.79■□□□□ 0.28
NUP54-217ENST00000514987 TPM1P09493 284 aa16.79■□□□□ 0.28
NUP54-217ENST00000514987 UBA7P41226 1012 aa16.79■□□□□ 0.28
NUP54-217ENST00000514987 PAK1Q13153 545 aa16.79■□□□□ 0.28
NUP54-217ENST00000514987 KCNB1Q14721 858 aa16.79■□□□□ 0.28
NUP54-217ENST00000514987 NONOQ15233 471 aaKnown RBP eCLIP16.79■□□□□ 0.28
NUP54-217ENST00000514987 RRAGBQ5VZM2 374 aa16.79■□□□□ 0.28
NUP54-217ENST00000514987 KLHL10Q6JEL2 608 aa16.79■□□□□ 0.28
NUP54-217ENST00000514987 SRRTQ9BXP5 876 aaKnown RBP16.79■□□□□ 0.28
NUP54-217ENST00000514987 LIMA1Q9UHB6 759 aaKnown RBP16.79■□□□□ 0.28
NUP54-217ENST00000514987 BAZ2BQ9UIF8 2168 aaKnown RBP16.79■□□□□ 0.28
NUP54-217ENST00000514987 ITIH6Q6UXX5 1313 aa16.79■□□□□ 0.28
NUP54-217ENST00000514987 MYO3BQ8WXR4 1341 aa16.79■□□□□ 0.28
NUP54-217ENST00000514987 C10orf71Q711Q0 1435 aa16.78■□□□□ 0.28
NUP54-217ENST00000514987 NAPAP54920 295 aa16.78■□□□□ 0.28
NUP54-217ENST00000514987 PPP4R3BQ5MIZ7 849 aa16.78■□□□□ 0.28
NUP54-217ENST00000514987 TYW1BQ6NUM6 668 aa16.78■□□□□ 0.28
NUP54-217ENST00000514987 SYT10Q6XYQ8 523 aa16.78■□□□□ 0.28
NUP54-217ENST00000514987 APTXQ7Z2E3 356 aaKnown RBP16.78■□□□□ 0.28
NUP54-217ENST00000514987 ATP6V0A2Q9Y487 856 aa16.78■□□□□ 0.28
NUP54-217ENST00000514987 LRRC10BA6NIK2 292 aa16.77■□□□□ 0.28
NUP54-217ENST00000514987 PBX1P40424 430 aa16.77■□□□□ 0.28
NUP54-217ENST00000514987 DDR1Q08345 913 aa16.77■□□□□ 0.28
NUP54-217ENST00000514987 STIM1Q13586 685 aa16.77■□□□□ 0.28
NUP54-217ENST00000514987 TRIM14Q14142 442 aa16.77■□□□□ 0.28
NUP54-217ENST00000514987 SLC35G1Q2M3R5 365 aa16.77■□□□□ 0.28
NUP54-217ENST00000514987 ASPRV1Q53RT3 343 aa16.77■□□□□ 0.28
NUP54-217ENST00000514987 REXO1L1PQ8IX06 675 aa16.77■□□□□ 0.28
NUP54-217ENST00000514987 CCDC47Q96A33 483 aaKnown RBP16.77■□□□□ 0.28
NUP54-217ENST00000514987 FEZ1Q99689 392 aa16.77■□□□□ 0.28
NUP54-217ENST00000514987 SWAP70Q9UH65 585 aa16.77■□□□□ 0.28
NUP54-217ENST00000514987 CTNND2Q9UQB3 1225 aa16.77■□□□□ 0.28
NUP54-217ENST00000514987 PPP2R2CQ9Y2T4 447 aa16.77■□□□□ 0.28
NUP54-217ENST00000514987 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.77■□□□□ 0.28
NUP54-217ENST00000514987 QSER1Q2KHR3 1735 aa16.77■□□□□ 0.27
NUP54-217ENST00000514987 H7C1D1 291 aa16.77■□□□□ 0.27
NUP54-217ENST00000514987 PPP1R2P41236 205 aa16.77■□□□□ 0.27
NUP54-217ENST00000514987 INF2Q27J81 1249 aa16.77■□□□□ 0.27
NUP54-217ENST00000514987 HSP90AA4PQ58FG1 418 aa16.77■□□□□ 0.27
NUP54-217ENST00000514987 RASSF8Q8NHQ8 419 aa16.77■□□□□ 0.27
NUP54-217ENST00000514987 CEP95Q96GE4 821 aa16.77■□□□□ 0.27
NUP54-217ENST00000514987 RIOX1Q9H6W3 641 aa16.77■□□□□ 0.27
NUP54-217ENST00000514987 ZNF215Q9UL58 517 aaPredicted RBP16.77■□□□□ 0.27
NUP54-217ENST00000514987 SMCO2A6NFE2 343 aa16.76■□□□□ 0.27
NUP54-217ENST00000514987 ADAMTS3O15072 1205 aa16.76■□□□□ 0.27
NUP54-217ENST00000514987 OR52Z1P0C646 297 aa16.76■□□□□ 0.27
NUP54-217ENST00000514987 CASP1P29466 404 aa16.76■□□□□ 0.27
NUP54-217ENST00000514987 STX17P56962 302 aa16.76■□□□□ 0.27
NUP54-217ENST00000514987 CCDC93Q567U6 631 aa16.76■□□□□ 0.27
NUP54-217ENST00000514987 CNGA4Q8IV77 575 aa16.76■□□□□ 0.27
NUP54-217ENST00000514987 IGSF22Q8N9C0 903 aa16.76■□□□□ 0.27
NUP54-217ENST00000514987 RASGRP4Q8TDF6 673 aa16.76■□□□□ 0.27
NUP54-217ENST00000514987 MTRQ99707 1265 aa16.76■□□□□ 0.27
NUP54-217ENST00000514987 ZC3H12CQ9C0D7 883 aaKnown RBP16.76■□□□□ 0.27
NUP54-217ENST00000514987 BLZF1Q9H2G9 400 aa16.76■□□□□ 0.27
NUP54-217ENST00000514987 DAGLAQ9Y4D2 1042 aa16.76■□□□□ 0.27
NUP54-217ENST00000514987 HOXA7P31268 230 aaPredicted RBP16.75■□□□□ 0.27
NUP54-217ENST00000514987 GTF2IP78347 998 aa16.75■□□□□ 0.27
NUP54-217ENST00000514987 KARSQ15046 597 aaKnown RBP16.75■□□□□ 0.27
NUP54-217ENST00000514987 NEK8Q86SG6 692 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms