RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 PDIA4P13667 645 aaKnown RBP15.07■□□□□ 0
LIMCH1-220ENST00000514190 LBX1P52954 281 aa15.07■□□□□ 0
LIMCH1-220ENST00000514190 AKAP17AQ02040 695 aaKnown RBP15.07■□□□□ 0
LIMCH1-220ENST00000514190 PPIL2Q13356 520 aa15.07■□□□□ 0
LIMCH1-220ENST00000514190 ZYXQ15942 572 aaKnown RBP15.07■□□□□ 0
LIMCH1-220ENST00000514190 SH3D19Q5HYK7 790 aa15.07■□□□□ 0
LIMCH1-220ENST00000514190 LARP1BQ659C4 914 aaKnown RBP15.07■□□□□ 0
LIMCH1-220ENST00000514190 BTNL9Q6UXG8 535 aa15.07■□□□□ 0
LIMCH1-220ENST00000514190 CNKSR2Q8WXI2 1034 aa15.07■□□□□ 0
LIMCH1-220ENST00000514190 C12orf42Q96LP6 360 aa15.07■□□□□ 0
LIMCH1-220ENST00000514190 CPVLQ9H3G5 476 aa15.07■□□□□ 0
LIMCH1-220ENST00000514190 CHMP5Q9NZZ3 219 aa15.07■□□□□ 0
LIMCH1-220ENST00000514190 RBM27Q9P2N5 1060 aaKnown RBP15.07■□□□□ 0
LIMCH1-220ENST00000514190 CNTNAP5Q8WYK1 1306 aa15.07■□□□□ 0
LIMCH1-220ENST00000514190 DOCK1Q14185 1865 aa15.06■□□□□ 0
LIMCH1-220ENST00000514190 TMEM232C9JQI7 657 aa15.06■□□□□ 0
LIMCH1-220ENST00000514190 WDR46O15213 610 aaKnown RBP15.06■□□□□ 0
LIMCH1-220ENST00000514190 SYT1P21579 422 aa15.06■□□□□ 0
LIMCH1-220ENST00000514190 KIF23Q02241 960 aaPredicted RBP15.06■□□□□ 0
LIMCH1-220ENST00000514190 PKN1Q16512 942 aa15.06■□□□□ 0
LIMCH1-220ENST00000514190 FAM83BQ5T0W9 1011 aa15.06■□□□□ 0
LIMCH1-220ENST00000514190 TNS4Q8IZW8 715 aa15.06■□□□□ 0
LIMCH1-220ENST00000514190 CHURC1Q8WUH1 139 aa15.06■□□□□ 0
LIMCH1-220ENST00000514190 WASF1Q92558 559 aa15.06■□□□□ 0
LIMCH1-220ENST00000514190 VAT1LQ9HCJ6 419 aa15.06■□□□□ 0
LIMCH1-220ENST00000514190 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.06■□□□□ 0
LIMCH1-220ENST00000514190 KCNH4Q9UQ05 1017 aa15.06■□□□□ 0
LIMCH1-220ENST00000514190 SLC16A2P36021 539 aa15.05■□□□□ -0
LIMCH1-220ENST00000514190 HMGCS2P54868 508 aa15.05■□□□□ -0
LIMCH1-220ENST00000514190 NUCB2P80303 420 aa15.05■□□□□ -0
LIMCH1-220ENST00000514190 ADGRF4Q8IZF3 695 aa15.05■□□□□ -0
LIMCH1-220ENST00000514190 RGS22Q8NE09 1264 aa15.05■□□□□ -0
LIMCH1-220ENST00000514190 OPTNQ96CV9 577 aa15.05■□□□□ -0
LIMCH1-220ENST00000514190 MTMR8Q96EF0 704 aa15.05■□□□□ -0
LIMCH1-220ENST00000514190 OTUD5Q96G74 571 aa15.05■□□□□ -0
LIMCH1-220ENST00000514190 ALG1Q9BT22 464 aa15.05■□□□□ -0
LIMCH1-220ENST00000514190 JMJD4Q9H9V9 463 aa15.05■□□□□ -0
LIMCH1-220ENST00000514190 TMOD4Q9NZQ9 345 aa15.05■□□□□ -0
LIMCH1-220ENST00000514190 ISY1Q9ULR0 285 aaKnown RBP15.05■□□□□ -0
LIMCH1-220ENST00000514190 ATAD5Q96QE3 1844 aa15.05■□□□□ -0
LIMCH1-220ENST00000514190 MYH4Q9Y623 1939 aa15.05■□□□□ -0
LIMCH1-220ENST00000514190 hCG_1642624A0A1W2PR95 340 aa15.04■□□□□ -0
LIMCH1-220ENST00000514190 IRF6O14896 467 aa15.04■□□□□ -0
LIMCH1-220ENST00000514190 VCAM1P19320 739 aa15.04■□□□□ -0
LIMCH1-220ENST00000514190 DGKZQ13574 1117 aa15.04■□□□□ -0
LIMCH1-220ENST00000514190 PFKFB3Q16875 520 aaPredicted RBP15.04■□□□□ -0
LIMCH1-220ENST00000514190 SYDE2Q5VT97 1194 aa15.04■□□□□ -0
LIMCH1-220ENST00000514190 FAM160B2Q86V87 743 aa15.04■□□□□ -0
LIMCH1-220ENST00000514190 RRP36Q96EU6 259 aaKnown RBP15.04■□□□□ -0
LIMCH1-220ENST00000514190 AIFM3Q96NN9 605 aa15.04■□□□□ -0
LIMCH1-220ENST00000514190 FEM1BQ9UK73 627 aa15.04■□□□□ -0
LIMCH1-220ENST00000514190 A0A0G2JLL6 359 aaPredicted RBP15.03■□□□□ -0
LIMCH1-220ENST00000514190 STX6O43752 255 aa15.03■□□□□ -0
LIMCH1-220ENST00000514190 SCG2P13521 617 aa15.03■□□□□ -0
LIMCH1-220ENST00000514190 GJA5P36382 358 aa15.03■□□□□ -0
LIMCH1-220ENST00000514190 STAT2P52630 851 aa15.03■□□□□ -0
LIMCH1-220ENST00000514190 PRRT2Q7Z6L0 340 aaPredicted RBP15.03■□□□□ -0
LIMCH1-220ENST00000514190 REM2Q8IYK8 340 aaPredicted RBP15.03■□□□□ -0
LIMCH1-220ENST00000514190 FBXO18Q8NFZ0 1043 aa15.03■□□□□ -0
LIMCH1-220ENST00000514190 PIBF1Q8WXW3 757 aa15.03■□□□□ -0
LIMCH1-220ENST00000514190 C8orf76Q96K31 380 aa15.03■□□□□ -0
LIMCH1-220ENST00000514190 PIGSQ96S52 555 aa15.03■□□□□ -0
LIMCH1-220ENST00000514190 RPAP3Q9H6T3 665 aaPredicted RBP15.03■□□□□ -0
LIMCH1-220ENST00000514190 TSKSQ9UJT2 592 aa15.03■□□□□ -0
LIMCH1-220ENST00000514190 PRR12Q9ULL5 1215 aa15.03■□□□□ -0
LIMCH1-220ENST00000514190 PNMA6FA0A0J9YX94 578 aa15.02■□□□□ -0
LIMCH1-220ENST00000514190 BRD1O95696 1058 aa15.02■□□□□ -0
LIMCH1-220ENST00000514190 IKQ13123 557 aaPredicted RBP15.02■□□□□ -0
LIMCH1-220ENST00000514190 PKP1Q13835 747 aa15.02■□□□□ -0
LIMCH1-220ENST00000514190 PROCA1Q8NCQ7 364 aaPredicted RBP15.02■□□□□ -0
LIMCH1-220ENST00000514190 WNK4Q96J92 1243 aa15.02■□□□□ -0
LIMCH1-220ENST00000514190 FBXO28Q9NVF7 368 aa15.02■□□□□ -0
LIMCH1-220ENST00000514190 SAGE1Q9NXZ1 904 aa15.02■□□□□ -0
LIMCH1-220ENST00000514190 SEC63Q9UGP8 760 aaKnown RBP15.02■□□□□ -0
LIMCH1-220ENST00000514190 MTMR6Q9Y217 621 aa15.02■□□□□ -0
LIMCH1-220ENST00000514190 ZDHHC9Q9Y397 364 aa15.02■□□□□ -0
LIMCH1-220ENST00000514190 USP17L15C9J2P7 530 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 USP17L13C9JLJ4 530 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 USP17L11C9JVI0 530 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 USP17L18D6R9N7 530 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 USP17L22D6RA61 530 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 USP17L17D6RBQ6 530 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 USP17L19D6RCP7 530 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 USP17L20D6RJB6 530 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 H3BQV1 296 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 ZBTB5O15062 677 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 USP17L24Q0WX57 530 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 SNAPC2Q13487 334 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 SPRYD7Q5W111 196 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 FASTKD5Q7L8L6 764 aaKnown RBP15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 HOMER1Q86YM7 354 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 FAM177A1Q8N128 213 aaPredicted RBP15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 PRPF38AQ8NAV1 312 aaKnown RBP15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 SLF1Q9BQI6 1058 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 TANGO6Q9C0B7 1094 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 SH3GLB2Q9NR46 395 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 GJB4Q9NTQ9 266 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 OTOFQ9HC10 1997 aa15.01□□□□□ -0.01
LIMCH1-220ENST00000514190 BAZ2BQ9UIF8 2168 aaKnown RBP15□□□□□ -0.01
LIMCH1-220ENST00000514190 VPS37CA5D8V6 355 aaPredicted RBP15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms