RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 KIFC2Q96AC6 838 aa13.32□□□□□ -0.28
LIMCH1-214ENST00000512228 TINF2Q9BSI4 451 aa13.32□□□□□ -0.28
LIMCH1-214ENST00000512228 LNPKQ9C0E8 428 aa13.32□□□□□ -0.28
LIMCH1-214ENST00000512228 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.32□□□□□ -0.28
LIMCH1-214ENST00000512228 DDX49Q9Y6V7 483 aaKnown RBP13.32□□□□□ -0.28
LIMCH1-214ENST00000512228 A0A0D9SFI3 127 aa13.31□□□□□ -0.28
LIMCH1-214ENST00000512228 DNM1LO00429 736 aa13.31□□□□□ -0.28
LIMCH1-214ENST00000512228 ADCY6O43306 1168 aa13.31□□□□□ -0.28
LIMCH1-214ENST00000512228 TTLL1O95922 423 aa13.31□□□□□ -0.28
LIMCH1-214ENST00000512228 MYCNP04198 464 aaPredicted RBP13.31□□□□□ -0.28
LIMCH1-214ENST00000512228 ADCYAP1R1P41586 468 aa13.31□□□□□ -0.28
LIMCH1-214ENST00000512228 LRRC41Q15345 812 aa13.31□□□□□ -0.28
LIMCH1-214ENST00000512228 SNRNP48Q6IEG0 339 aaKnown RBP13.31□□□□□ -0.28
LIMCH1-214ENST00000512228 B4GALNT3Q6L9W6 998 aa13.31□□□□□ -0.28
LIMCH1-214ENST00000512228 SLC39A5Q6ZMH5 540 aa13.31□□□□□ -0.28
LIMCH1-214ENST00000512228 PRPF38AQ8NAV1 312 aaKnown RBP13.31□□□□□ -0.28
LIMCH1-214ENST00000512228 NAPBQ9H115 298 aa13.31□□□□□ -0.28
LIMCH1-214ENST00000512228 SLC38A10Q9HBR0 1119 aa13.31□□□□□ -0.28
LIMCH1-214ENST00000512228 ZNF536O15090 1300 aa13.31□□□□□ -0.28
LIMCH1-214ENST00000512228 MSCO60682 206 aa13.3□□□□□ -0.28
LIMCH1-214ENST00000512228 PGK1P00558 417 aa13.3□□□□□ -0.28
LIMCH1-214ENST00000512228 FGAP02671 866 aa13.3□□□□□ -0.28
LIMCH1-214ENST00000512228 FGRP09769 529 aa13.3□□□□□ -0.28
LIMCH1-214ENST00000512228 TSPY3P0CV98 308 aa13.3□□□□□ -0.28
LIMCH1-214ENST00000512228 TSPY8P0CW00 308 aa13.3□□□□□ -0.28
LIMCH1-214ENST00000512228 MCCP23508 829 aa13.3□□□□□ -0.28
LIMCH1-214ENST00000512228 RTP1P59025 263 aa13.3□□□□□ -0.28
LIMCH1-214ENST00000512228 KCTD2Q14681 263 aa13.3□□□□□ -0.28
LIMCH1-214ENST00000512228 SH3RF1Q7Z6J0 888 aa13.3□□□□□ -0.28
LIMCH1-214ENST00000512228 ZNF589Q86UQ0 364 aaPredicted RBP13.3□□□□□ -0.28
LIMCH1-214ENST00000512228 GMCL1P1Q8NEA9 526 aa13.3□□□□□ -0.28
LIMCH1-214ENST00000512228 EXOC6Q8TAG9 804 aa13.3□□□□□ -0.28
LIMCH1-214ENST00000512228 EVI5LQ96CN4 794 aa13.3□□□□□ -0.28
LIMCH1-214ENST00000512228 NACAP1Q9BZK3 213 aa13.3□□□□□ -0.28
LIMCH1-214ENST00000512228 A0A1W2PPC1 479 aa13.29□□□□□ -0.28
LIMCH1-214ENST00000512228 TMEM232C9JQI7 657 aa13.29□□□□□ -0.28
LIMCH1-214ENST00000512228 ATP2A1O14983 1001 aa13.29□□□□□ -0.28
LIMCH1-214ENST00000512228 PTGS1P23219 599 aa13.29□□□□□ -0.28
LIMCH1-214ENST00000512228 ITGB8P26012 769 aa13.29□□□□□ -0.28
LIMCH1-214ENST00000512228 NMIQ13287 307 aaPredicted RBP13.29□□□□□ -0.28
LIMCH1-214ENST00000512228 TTBK2Q6IQ55 1244 aa13.29□□□□□ -0.28
LIMCH1-214ENST00000512228 KCTD1Q719H9 257 aa13.29□□□□□ -0.28
LIMCH1-214ENST00000512228 Q7L0L9 218 aa13.29□□□□□ -0.28
LIMCH1-214ENST00000512228 SMC5Q8IY18 1101 aa13.29□□□□□ -0.28
LIMCH1-214ENST00000512228 AGBL1Q96MI9 1066 aa13.29□□□□□ -0.28
LIMCH1-214ENST00000512228 TEX13BQ9BXU2 312 aa13.29□□□□□ -0.28
LIMCH1-214ENST00000512228 UBE2OQ9C0C9 1292 aaKnown RBP13.29□□□□□ -0.28
LIMCH1-214ENST00000512228 DIS3Q9Y2L1 958 aaKnown RBP13.29□□□□□ -0.28
LIMCH1-214ENST00000512228 PLIN4Q96Q06 1357 aa13.29□□□□□ -0.28
LIMCH1-214ENST00000512228 LTBP2Q14767 1821 aa13.28□□□□□ -0.28
LIMCH1-214ENST00000512228 TRIM43BA6NCK2 446 aa13.28□□□□□ -0.28
LIMCH1-214ENST00000512228 MYADML2A6NDP7 307 aa13.28□□□□□ -0.28
LIMCH1-214ENST00000512228 BMP3P12645 472 aa13.28□□□□□ -0.28
LIMCH1-214ENST00000512228 NOVP48745 357 aa13.28□□□□□ -0.28
LIMCH1-214ENST00000512228 CNTN2Q02246 1040 aa13.28□□□□□ -0.28
LIMCH1-214ENST00000512228 PDE4BQ07343 736 aa13.28□□□□□ -0.28
LIMCH1-214ENST00000512228 TRIM60Q495X7 471 aa13.28□□□□□ -0.28
LIMCH1-214ENST00000512228 PLEKHM2Q8IWE5 1019 aa13.28□□□□□ -0.28
LIMCH1-214ENST00000512228 ARRDC4Q8NCT1 418 aa13.28□□□□□ -0.28
LIMCH1-214ENST00000512228 TRIM43Q96BQ3 446 aaPredicted RBP13.28□□□□□ -0.28
LIMCH1-214ENST00000512228 PURBQ96QR8 312 aaKnown RBP13.28□□□□□ -0.28
LIMCH1-214ENST00000512228 HELLSQ9NRZ9 838 aa13.28□□□□□ -0.28
LIMCH1-214ENST00000512228 SLC5A4Q9NY91 659 aa13.28□□□□□ -0.28
LIMCH1-214ENST00000512228 ANAPC4Q9UJX5 808 aa13.28□□□□□ -0.28
LIMCH1-214ENST00000512228 FEM1BQ9UK73 627 aa13.28□□□□□ -0.28
LIMCH1-214ENST00000512228 LAMA3Q16787 3333 aa13.27□□□□□ -0.28
LIMCH1-214ENST00000512228 ZBED4O75132 1171 aa13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 ADAMTS4O75173 837 aa13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 HSPD1P10809 573 aaKnown RBP13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 HAND2P61296 217 aa13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 SNX17Q15036 470 aa13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 ALX1Q15699 326 aa13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 LRRFIP1Q32MZ4 808 aaKnown RBP13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 MCMDC2Q4G0Z9 681 aa13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 TMEM63BQ5T3F8 832 aa13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 MAMDC4Q6UXC1 1216 aa13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 TDHQ8IZJ6 230 aa13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 DDX11Q96FC9 970 aa13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 KATNBL1Q9H079 304 aa13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 XPNPEP3Q9NQH7 507 aa13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 HOMER2Q9NSB8 354 aa13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 MTMR7Q9Y216 660 aa13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 ATP11BQ9Y2G3 1177 aa13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 ASTN1O14525 1302 aa13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 LCTP09848 1927 aa13.27□□□□□ -0.29
LIMCH1-214ENST00000512228 SOWAHBA6NEL2 793 aa13.26□□□□□ -0.29
LIMCH1-214ENST00000512228 RANBP6O60518 1105 aaKnown RBP13.26□□□□□ -0.29
LIMCH1-214ENST00000512228 SLC16A2P36021 539 aa13.26□□□□□ -0.29
LIMCH1-214ENST00000512228 LRIT3Q3SXY7 679 aa13.26□□□□□ -0.29
LIMCH1-214ENST00000512228 MUM1L1Q5H9M0 696 aa13.26□□□□□ -0.29
LIMCH1-214ENST00000512228 CCSAPQ6IQ19 270 aaPredicted RBP13.26□□□□□ -0.29
LIMCH1-214ENST00000512228 RCSD1Q6JBY9 416 aa13.26□□□□□ -0.29
LIMCH1-214ENST00000512228 STAG1Q8WVM7 1258 aa13.26□□□□□ -0.29
LIMCH1-214ENST00000512228 GMCL1Q96IK5 515 aa13.26□□□□□ -0.29
LIMCH1-214ENST00000512228 ZNF287Q9HBT7 754 aa13.26□□□□□ -0.29
LIMCH1-214ENST00000512228 PRR12Q9ULL5 1215 aa13.26□□□□□ -0.29
LIMCH1-214ENST00000512228 STX8Q9UNK0 236 aa13.26□□□□□ -0.29
LIMCH1-214ENST00000512228 PHF24Q9UPV7 400 aa13.26□□□□□ -0.29
LIMCH1-214ENST00000512228 DNAH12Q6ZR08 3092 aa13.25□□□□□ -0.29
LIMCH1-214ENST00000512228 TSPY2A6NKD2 308 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms