RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 HALP42357 657 aa11.05□□□□□ -0.64
USP53-207ENST00000510852 RAB27AP51159 221 aa11.05□□□□□ -0.64
USP53-207ENST00000510852 SH3BGRP55822 239 aaPredicted RBP11.05□□□□□ -0.64
USP53-207ENST00000510852 UBASH3AP57075 661 aa11.05□□□□□ -0.64
USP53-207ENST00000510852 G3BP1Q13283 466 aaKnown RBP eCLIP11.05□□□□□ -0.64
USP53-207ENST00000510852 CHD1LQ86WJ1 897 aa11.05□□□□□ -0.64
USP53-207ENST00000510852 MNS1Q8NEH6 495 aa11.05□□□□□ -0.64
USP53-207ENST00000510852 SEC31BQ9NQW1 1179 aa11.05□□□□□ -0.64
USP53-207ENST00000510852 GPHNQ9NQX3 736 aaPredicted RBP11.05□□□□□ -0.64
USP53-207ENST00000510852 RTL9Q8NET4 1388 aa11.05□□□□□ -0.64
USP53-207ENST00000510852 NEK3P51956 506 aa11.05□□□□□ -0.64
USP53-207ENST00000510852 HSD17B7P56937 341 aa11.05□□□□□ -0.64
USP53-207ENST00000510852 UBXN2AP68543 259 aa11.05□□□□□ -0.64
USP53-207ENST00000510852 DONSONQ9NYP3 566 aa11.05□□□□□ -0.64
USP53-207ENST00000510852 MKL2Q9ULH7 1088 aa11.05□□□□□ -0.64
USP53-207ENST00000510852 PPP1R9AQ9ULJ8 1098 aa11.05□□□□□ -0.64
USP53-207ENST00000510852 ESYT3A0FGR9 886 aa11.04□□□□□ -0.64
USP53-207ENST00000510852 SPDYE16A6NNV3 312 aaPredicted RBP11.04□□□□□ -0.64
USP53-207ENST00000510852 LETM1O95202 739 aaPredicted RBP11.04□□□□□ -0.64
USP53-207ENST00000510852 AGR2O95994 175 aa11.04□□□□□ -0.64
USP53-207ENST00000510852 KIAA0825Q8IV33 1275 aa11.04□□□□□ -0.64
USP53-207ENST00000510852 JMYQ8N9B5 988 aa11.04□□□□□ -0.64
USP53-207ENST00000510852 C17orf50Q8WW18 174 aa11.04□□□□□ -0.64
USP53-207ENST00000510852 LRRCC1Q9C099 1032 aa11.04□□□□□ -0.64
USP53-207ENST00000510852 CEP131Q9UPN4 1083 aa11.04□□□□□ -0.64
USP53-207ENST00000510852 RIC1Q4ADV7 1423 aa11.04□□□□□ -0.64
USP53-207ENST00000510852 LAMB2P55268 1798 aa11.04□□□□□ -0.64
USP53-207ENST00000510852 PSDA5PKW4 1024 aaPredicted RBP11.04□□□□□ -0.64
USP53-207ENST00000510852 ZBTB7AO95365 584 aa11.04□□□□□ -0.64
USP53-207ENST00000510852 SLC4A3P48751 1232 aa11.04□□□□□ -0.64
USP53-207ENST00000510852 SLC7A5Q01650 507 aa11.04□□□□□ -0.64
USP53-207ENST00000510852 PPP2R5CQ13362 524 aa11.04□□□□□ -0.64
USP53-207ENST00000510852 ERC1Q8IUD2 1116 aa11.04□□□□□ -0.64
USP53-207ENST00000510852 RHPN1Q8TCX5 695 aa11.04□□□□□ -0.64
USP53-207ENST00000510852 KIF1BPQ96EK5 621 aa11.04□□□□□ -0.64
USP53-207ENST00000510852 C2orf49Q9BVC5 232 aaPredicted RBP11.04□□□□□ -0.64
USP53-207ENST00000510852 RPAP3Q9H6T3 665 aaPredicted RBP11.04□□□□□ -0.64
USP53-207ENST00000510852 ZIM2Q9NZV7 527 aa11.04□□□□□ -0.64
USP53-207ENST00000510852 GTF3C4Q9UKN8 822 aa11.04□□□□□ -0.64
USP53-207ENST00000510852 FAM25EA8MYX2 175 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 EYA2O00167 538 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 CCP110O43303 1012 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 SASH1O94885 1247 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 IFIT2P09913 472 aaKnown RBP11.03□□□□□ -0.64
USP53-207ENST00000510852 SETSIPP0DME0 302 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 STT3AP46977 705 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 ST13P50502 369 aaKnown RBP11.03□□□□□ -0.64
USP53-207ENST00000510852 LRRC24Q50LG9 513 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 ATG9AQ7Z3C6 839 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 MILR1Q7Z6M3 343 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 ZSCAN29Q8IWY8 852 aaPredicted RBP11.03□□□□□ -0.64
USP53-207ENST00000510852 NKAIN3Q8N8D7 197 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 TRIML1Q8N9V2 468 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 TDRD7Q8NHU6 1098 aaKnown RBP11.03□□□□□ -0.64
USP53-207ENST00000510852 L3MBTL3Q96JM7 780 aaPredicted RBP11.03□□□□□ -0.64
USP53-207ENST00000510852 UROC1Q96N76 676 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 NCAPGQ9BPX3 1015 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 BRIP1Q9BX63 1249 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 PUS3Q9BZE2 481 aaKnown RBP11.03□□□□□ -0.64
USP53-207ENST00000510852 EFCC1Q9HA90 598 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 ZSWIM6Q9HCJ5 1215 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 PAXBP1Q9Y5B6 917 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 CIAO1O76071 339 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 DNAJB2P25686 324 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 SMARCA1P28370 1054 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 MAGEA8P43361 318 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 C11orf91Q3C1V1 193 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 CTR9Q6PD62 1173 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 IL1RAPL2Q9NP60 686 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 DDX41Q9UJV9 622 aaKnown RBP11.03□□□□□ -0.64
USP53-207ENST00000510852 MYH3P11055 1940 aa11.03□□□□□ -0.64
USP53-207ENST00000510852 TNRC6CQ9HCJ0 1690 aaKnown RBP11.02□□□□□ -0.65
USP53-207ENST00000510852 NRXN2Q9P2S2 1712 aa11.02□□□□□ -0.65
USP53-207ENST00000510852 KLRG2A4D1S0 409 aaPredicted RBP11.02□□□□□ -0.65
USP53-207ENST00000510852 PRPF3O43395 683 aaKnown RBP11.02□□□□□ -0.65
USP53-207ENST00000510852 IL15P40933 162 aaPredicted RBP11.02□□□□□ -0.65
USP53-207ENST00000510852 IRX5P78411 483 aaPredicted RBP11.02□□□□□ -0.65
USP53-207ENST00000510852 FOXK1P85037 733 aa11.02□□□□□ -0.65
USP53-207ENST00000510852 PKN2Q16513 984 aaKnown RBP11.02□□□□□ -0.65
USP53-207ENST00000510852 CRY2Q49AN0 593 aa11.02□□□□□ -0.65
USP53-207ENST00000510852 LDHAL6AQ6ZMR3 332 aa11.02□□□□□ -0.65
USP53-207ENST00000510852 RTL10Q7L3V2 364 aa11.02□□□□□ -0.65
USP53-207ENST00000510852 PNMA8AQ86V59 439 aaPredicted RBP11.02□□□□□ -0.65
USP53-207ENST00000510852 DGKHQ86XP1 1220 aa11.02□□□□□ -0.65
USP53-207ENST00000510852 MAP7D2Q96T17 732 aa11.02□□□□□ -0.65
USP53-207ENST00000510852 SRRTQ9BXP5 876 aaKnown RBP11.02□□□□□ -0.65
USP53-207ENST00000510852 AP1M1Q9BXS5 423 aa11.02□□□□□ -0.65
USP53-207ENST00000510852 MTFR1LQ9H019 292 aa11.02□□□□□ -0.65
USP53-207ENST00000510852 SAGE1Q9NXZ1 904 aa11.02□□□□□ -0.65
USP53-207ENST00000510852 TMOD4Q9NZQ9 345 aa11.02□□□□□ -0.65
USP53-207ENST00000510852 CDV3Q9UKY7 258 aaKnown RBP11.02□□□□□ -0.65
USP53-207ENST00000510852 AP1G2O75843 785 aa11.01□□□□□ -0.65
USP53-207ENST00000510852 TAF1CQ15572 869 aaPredicted RBP11.01□□□□□ -0.65
USP53-207ENST00000510852 TKFCQ3LXA3 575 aa11.01□□□□□ -0.65
USP53-207ENST00000510852 MMS22LQ6ZRQ5 1243 aa11.01□□□□□ -0.65
USP53-207ENST00000510852 C16orf71Q8IYS4 520 aaPredicted RBP11.01□□□□□ -0.65
USP53-207ENST00000510852 CNNM1Q9NRU3 951 aa11.01□□□□□ -0.65
USP53-207ENST00000510852 SNTG2Q9NY99 539 aa11.01□□□□□ -0.65
USP53-207ENST00000510852 NDUFB9Q9Y6M9 179 aa11.01□□□□□ -0.65
USP53-207ENST00000510852 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms