RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 ADAMTS3O15072 1205 aa12.53□□□□□ -0.4
SH3RF1-203ENST00000508685 GOLGA8HP0CJ92 632 aa12.53□□□□□ -0.4
SH3RF1-203ENST00000508685 SLURP2P0DP57 97 aa12.53□□□□□ -0.4
SH3RF1-203ENST00000508685 SCG2P13521 617 aa12.53□□□□□ -0.4
SH3RF1-203ENST00000508685 KRT2P35908 639 aa12.53□□□□□ -0.4
SH3RF1-203ENST00000508685 SLC35G1Q2M3R5 365 aa12.53□□□□□ -0.4
SH3RF1-203ENST00000508685 RILPL1Q5EBL4 403 aa12.53□□□□□ -0.4
SH3RF1-203ENST00000508685 STRIP1Q5VSL9 837 aa12.53□□□□□ -0.4
SH3RF1-203ENST00000508685 HHIPL2Q6UWX4 724 aa12.53□□□□□ -0.4
SH3RF1-203ENST00000508685 CREBRFQ8IUR6 639 aa12.53□□□□□ -0.4
SH3RF1-203ENST00000508685 TRIML1Q8N9V2 468 aa12.53□□□□□ -0.4
SH3RF1-203ENST00000508685 ZNF579Q8NAF0 562 aaKnown RBP12.53□□□□□ -0.4
SH3RF1-203ENST00000508685 CNNM3Q8NE01 707 aa12.53□□□□□ -0.4
SH3RF1-203ENST00000508685 NLGN2Q8NFZ4 835 aa12.53□□□□□ -0.4
SH3RF1-203ENST00000508685 NEDD1Q8NHV4 660 aa12.53□□□□□ -0.4
SH3RF1-203ENST00000508685 TMX1Q9H3N1 280 aa12.53□□□□□ -0.4
SH3RF1-203ENST00000508685 KCNH3Q9ULD8 1083 aa12.53□□□□□ -0.4
SH3RF1-203ENST00000508685 CEP131Q9UPN4 1083 aa12.53□□□□□ -0.4
SH3RF1-203ENST00000508685 ZNF646O15015 1829 aaPredicted RBP12.52□□□□□ -0.4
SH3RF1-203ENST00000508685 CYTH3O43739 400 aa12.52□□□□□ -0.4
SH3RF1-203ENST00000508685 ETF1P62495 437 aaKnown RBP12.52□□□□□ -0.4
SH3RF1-203ENST00000508685 GRIN1Q05586 938 aa12.52□□□□□ -0.4
SH3RF1-203ENST00000508685 GABPAQ06546 454 aa12.52□□□□□ -0.4
SH3RF1-203ENST00000508685 GRM4Q14833 912 aa12.52□□□□□ -0.4
SH3RF1-203ENST00000508685 PFKFB3Q16875 520 aaPredicted RBP12.52□□□□□ -0.4
SH3RF1-203ENST00000508685 CCDC93Q567U6 631 aa12.52□□□□□ -0.4
SH3RF1-203ENST00000508685 SPECC1Q5M775 1068 aa12.52□□□□□ -0.4
SH3RF1-203ENST00000508685 C10orf71Q711Q0 1435 aa12.52□□□□□ -0.4
SH3RF1-203ENST00000508685 CLEC10AQ8IUN9 316 aa12.52□□□□□ -0.4
SH3RF1-203ENST00000508685 VSTM4Q8IW00 320 aa12.52□□□□□ -0.4
SH3RF1-203ENST00000508685 KRT222Q8N1A0 295 aa12.52□□□□□ -0.4
SH3RF1-203ENST00000508685 GPKOWQ92917 476 aaPredicted RBP eCLIP12.52□□□□□ -0.4
SH3RF1-203ENST00000508685 CPVLQ9H3G5 476 aa12.52□□□□□ -0.4
SH3RF1-203ENST00000508685 WNT7AO00755 349 aa12.52□□□□□ -0.41
SH3RF1-203ENST00000508685 TOP1P11387 765 aaKnown RBP12.52□□□□□ -0.41
SH3RF1-203ENST00000508685 LMOD1P29536 600 aaPredicted RBP12.52□□□□□ -0.41
SH3RF1-203ENST00000508685 CCDC178Q5BJE1 867 aa12.52□□□□□ -0.41
SH3RF1-203ENST00000508685 ZFPM1Q8IX07 1006 aa12.52□□□□□ -0.41
SH3RF1-203ENST00000508685 MLKLQ8NB16 471 aa12.52□□□□□ -0.41
SH3RF1-203ENST00000508685 ARHGAP6O43182 974 aa12.51□□□□□ -0.41
SH3RF1-203ENST00000508685 RBM5P52756 815 aaKnown RBP eCLIP12.51□□□□□ -0.41
SH3RF1-203ENST00000508685 EIF6P56537 245 aaKnown RBP12.51□□□□□ -0.41
SH3RF1-203ENST00000508685 CFAP100Q494V2 611 aa12.51□□□□□ -0.41
SH3RF1-203ENST00000508685 NT5DC1Q5TFE4 455 aa12.51□□□□□ -0.41
SH3RF1-203ENST00000508685 HOMER1Q86YM7 354 aa12.51□□□□□ -0.41
SH3RF1-203ENST00000508685 TNFRSF25Q93038 417 aa12.51□□□□□ -0.41
SH3RF1-203ENST00000508685 ZDHHC15Q96MV8 337 aa12.51□□□□□ -0.41
SH3RF1-203ENST00000508685 PRDM10Q9NQV6 1147 aa12.51□□□□□ -0.41
SH3RF1-203ENST00000508685 SERPINB13Q9UIV8 391 aa12.51□□□□□ -0.41
SH3RF1-203ENST00000508685 YDJCA8MPS7 323 aa12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 PPIP5K2O43314 1243 aa12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 AKR1B1P15121 316 aa12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 TCP10Q12799 353 aa12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 BMS1Q14692 1282 aaKnown RBP12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 TYW1BQ6NUM6 668 aa12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 USP17L2Q6R6M4 530 aa12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 HSD3B7Q9H2F3 369 aa12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 FAM53CQ9NYF3 392 aa12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 FBXO2Q9UK22 296 aaPredicted RBP12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 PALM3A6NDB9 673 aaPredicted RBP12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 PTPREP23469 700 aa12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 NLRP5P59047 1200 aa12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 TGFB2P61812 414 aa12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 KMT5BQ4FZB7 885 aa12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 TAF3Q5VWG9 929 aa12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 SYT10Q6XYQ8 523 aa12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 METTL16Q86W50 562 aaKnown RBP12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 ENOX1Q8TC92 643 aaKnown RBP12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 BRMS1Q9HCU9 246 aa12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 ARGLU1Q9NWB6 273 aaPredicted RBP12.5□□□□□ -0.41
SH3RF1-203ENST00000508685 PLIN4Q96Q06 1357 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 FAM196BA6NMK8 535 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 KLRF2D3W0D1 207 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 KCNA3P22001 575 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 SHMT1P34896 483 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 MDM2Q00987 491 aaPredicted RBP12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 PNOCQ13519 176 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 LONRF3Q496Y0 759 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 LRRC47Q8N1G4 583 aaKnown RBP12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 TTLL6Q8N841 843 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 MTMR4Q9NYA4 1195 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 PCDHA5Q9Y5H7 936 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 TRIM75PA6NK02 468 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 USP17L5A8MUK1 530 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 ATP8B1O43520 1251 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 STX10O60499 249 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 BMP15O95972 392 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 DPEP1P16444 411 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 ERCC5P28715 1186 aaPredicted RBP12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 NOVP48745 357 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 GNAQP50148 359 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 FKBP1AP62942 108 aaKnown RBP12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 GPR162Q16538 588 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 WWC2Q6AWC2 1192 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 PIK3AP1Q6ZUJ8 805 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 HEATR3Q7Z4Q2 680 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 DNAJC18Q9H819 358 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 FAM198AQ9UFP1 575 aa12.49□□□□□ -0.41
SH3RF1-203ENST00000508685 MYH8P13535 1937 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms