RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 PRPF38AQ8NAV1 312 aaKnown RBP13.75□□□□□ -0.21
HMGCS1-204ENST00000507293 FERMT2Q96AC1 680 aa13.75□□□□□ -0.21
HMGCS1-204ENST00000507293 KIFC2Q96AC6 838 aa13.75□□□□□ -0.21
HMGCS1-204ENST00000507293 NAPBQ9H115 298 aa13.75□□□□□ -0.21
HMGCS1-204ENST00000507293 XPNPEP3Q9NQH7 507 aa13.75□□□□□ -0.21
HMGCS1-204ENST00000507293 SZT2Q5T011 3432 aa13.75□□□□□ -0.21
HMGCS1-204ENST00000507293 SALL3Q9BXA9 1300 aa13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 ZBED4O75132 1171 aa13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 TTLL1O95922 423 aa13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 PGK1P00558 417 aa13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 ZNF865P0CJ78 1059 aaPredicted RBP13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 TSPY3P0CV98 308 aa13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 TSPY8P0CW00 308 aa13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 PDE4BQ07343 736 aa13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 PPARAQ07869 468 aa13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 SNX17Q15036 470 aa13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 DEFB123Q8N688 67 aa13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 GMCL1P1Q8NEA9 526 aa13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 NEDD1Q8NHV4 660 aa13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 MKL1Q969V6 931 aa13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 LENG1Q96BZ8 264 aaPredicted RBP13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 DDX11Q96FC9 970 aa13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 RAVER2Q9HCJ3 691 aaKnown RBP13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 PRDM5Q9NQX1 630 aaPredicted RBP13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 SYNPO2Q9UMS6 1093 aa13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 PHF24Q9UPV7 400 aa13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 CTDP1Q9Y5B0 961 aaPredicted RBP13.74□□□□□ -0.21
HMGCS1-204ENST00000507293 LRRC37A2A6NM11 1700 aa13.73□□□□□ -0.21
HMGCS1-204ENST00000507293 ATP2A1O14983 1001 aa13.73□□□□□ -0.21
HMGCS1-204ENST00000507293 SLC3A2P08195 630 aaKnown RBP13.73□□□□□ -0.21
HMGCS1-204ENST00000507293 AKR1A1P14550 325 aa13.73□□□□□ -0.21
HMGCS1-204ENST00000507293 TFAP4Q01664 338 aa13.73□□□□□ -0.21
HMGCS1-204ENST00000507293 SLFN13Q68D06 897 aa13.73□□□□□ -0.21
HMGCS1-204ENST00000507293 CCDC129Q6ZRS4 1044 aa13.73□□□□□ -0.21
HMGCS1-204ENST00000507293 CRBNQ96SW2 442 aa13.73□□□□□ -0.21
HMGCS1-204ENST00000507293 SLC38A10Q9HBR0 1119 aa13.73□□□□□ -0.21
HMGCS1-204ENST00000507293 FEM1BQ9UK73 627 aa13.73□□□□□ -0.21
HMGCS1-204ENST00000507293 ISY1Q9ULR0 285 aaKnown RBP13.73□□□□□ -0.21
HMGCS1-204ENST00000507293 CNPY2Q9Y2B0 182 aa13.73□□□□□ -0.21
HMGCS1-204ENST00000507293 SYNGAP1Q96PV0 1343 aa13.72□□□□□ -0.21
HMGCS1-204ENST00000507293 DNAJC25-GNG10A0A024R161 153 aa13.72□□□□□ -0.21
HMGCS1-204ENST00000507293 FOXP2O15409 715 aa13.72□□□□□ -0.21
HMGCS1-204ENST00000507293 BMP3P12645 472 aa13.72□□□□□ -0.21
HMGCS1-204ENST00000507293 RNF180Q86T96 592 aa13.72□□□□□ -0.21
HMGCS1-204ENST00000507293 MSL3Q8N5Y2 521 aaKnown RBP13.72□□□□□ -0.21
HMGCS1-204ENST00000507293 PDLIM7Q9NR12 457 aa13.72□□□□□ -0.21
HMGCS1-204ENST00000507293 ZBTB47Q9UFB7 747 aaPredicted RBP13.72□□□□□ -0.21
HMGCS1-204ENST00000507293 LCTP09848 1927 aa13.71□□□□□ -0.21
HMGCS1-204ENST00000507293 ADAMTS4O75173 837 aa13.71□□□□□ -0.21
HMGCS1-204ENST00000507293 SNAI1O95863 264 aaPredicted RBP13.71□□□□□ -0.21
HMGCS1-204ENST00000507293 CTDSPL2Q05D32 466 aa13.71□□□□□ -0.21
HMGCS1-204ENST00000507293 ANKRD45Q5TZF3 282 aa13.71□□□□□ -0.21
HMGCS1-204ENST00000507293 C1orf53Q5VUE5 145 aa13.71□□□□□ -0.21
HMGCS1-204ENST00000507293 MAMDC4Q6UXC1 1216 aa13.71□□□□□ -0.21
HMGCS1-204ENST00000507293 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.71□□□□□ -0.21
HMGCS1-204ENST00000507293 SH3RF1Q7Z6J0 888 aa13.71□□□□□ -0.21
HMGCS1-204ENST00000507293 CHMP4CQ96CF2 233 aa13.71□□□□□ -0.21
HMGCS1-204ENST00000507293 MTMR10Q9NXD2 777 aa13.71□□□□□ -0.21
HMGCS1-204ENST00000507293 ZHX1Q9UKY1 873 aaPredicted RBP13.71□□□□□ -0.21
HMGCS1-204ENST00000507293 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.71□□□□□ -0.21
HMGCS1-204ENST00000507293 SYNRGQ9UMZ2 1314 aa13.7□□□□□ -0.22
HMGCS1-204ENST00000507293 A0A1W2PQ45 241 aaPredicted RBP13.7□□□□□ -0.22
HMGCS1-204ENST00000507293 A0A1W2PQY0 241 aa13.7□□□□□ -0.22
HMGCS1-204ENST00000507293 TSPY2A6NKD2 308 aa13.7□□□□□ -0.22
HMGCS1-204ENST00000507293 TMEM232C9JQI7 657 aa13.7□□□□□ -0.22
HMGCS1-204ENST00000507293 OAZ1P54368 228 aa13.7□□□□□ -0.22
HMGCS1-204ENST00000507293 TLE2Q04725 743 aa13.7□□□□□ -0.22
HMGCS1-204ENST00000507293 ZNF467Q7Z7K2 595 aaPredicted RBP13.7□□□□□ -0.22
HMGCS1-204ENST00000507293 ANKRD35Q8N283 1001 aa13.7□□□□□ -0.22
HMGCS1-204ENST00000507293 CHST13Q8NET6 341 aa13.7□□□□□ -0.22
HMGCS1-204ENST00000507293 BADQ92934 168 aa13.7□□□□□ -0.22
HMGCS1-204ENST00000507293 FGD4Q96M96 766 aa13.7□□□□□ -0.22
HMGCS1-204ENST00000507293 INCENPQ9NQS7 918 aa13.7□□□□□ -0.22
HMGCS1-204ENST00000507293 HOMER2Q9NSB8 354 aa13.7□□□□□ -0.22
HMGCS1-204ENST00000507293 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.7□□□□□ -0.22
HMGCS1-204ENST00000507293 FBXO40Q9UH90 709 aa13.7□□□□□ -0.22
HMGCS1-204ENST00000507293 FAM184BQ9ULE4 1060 aa13.7□□□□□ -0.22
HMGCS1-204ENST00000507293 TRIM43BA6NCK2 446 aa13.69□□□□□ -0.22
HMGCS1-204ENST00000507293 SLC1A4P43007 532 aa13.69□□□□□ -0.22
HMGCS1-204ENST00000507293 STAT2P52630 851 aa13.69□□□□□ -0.22
HMGCS1-204ENST00000507293 IKQ13123 557 aaPredicted RBP13.69□□□□□ -0.22
HMGCS1-204ENST00000507293 SHHQ15465 462 aa13.69□□□□□ -0.22
HMGCS1-204ENST00000507293 C9orf50Q5SZB4 431 aa13.69□□□□□ -0.22
HMGCS1-204ENST00000507293 VPS53Q5VIR6 699 aa13.69□□□□□ -0.22
HMGCS1-204ENST00000507293 RASGRP2Q7LDG7 609 aa13.69□□□□□ -0.22
HMGCS1-204ENST00000507293 FAM160B2Q86V87 743 aa13.69□□□□□ -0.22
HMGCS1-204ENST00000507293 SLC17A8Q8NDX2 589 aa13.69□□□□□ -0.22
HMGCS1-204ENST00000507293 STAG1Q8WVM7 1258 aa13.69□□□□□ -0.22
HMGCS1-204ENST00000507293 TRIM43Q96BQ3 446 aaPredicted RBP13.69□□□□□ -0.22
HMGCS1-204ENST00000507293 EVI5LQ96CN4 794 aa13.69□□□□□ -0.22
HMGCS1-204ENST00000507293 GMCL1Q96IK5 515 aa13.69□□□□□ -0.22
HMGCS1-204ENST00000507293 STX8Q9UNK0 236 aa13.69□□□□□ -0.22
HMGCS1-204ENST00000507293 STXBP5LQ9Y2K9 1186 aa13.69□□□□□ -0.22
HMGCS1-204ENST00000507293 TACC3Q9Y6A5 838 aa13.69□□□□□ -0.22
HMGCS1-204ENST00000507293 LAMA3Q16787 3333 aa13.69□□□□□ -0.22
HMGCS1-204ENST00000507293 MYADML2A6NDP7 307 aa13.68□□□□□ -0.22
HMGCS1-204ENST00000507293 NMT2O60551 498 aa13.68□□□□□ -0.22
HMGCS1-204ENST00000507293 PQBP1O60828 265 aaKnown RBP13.68□□□□□ -0.22
HMGCS1-204ENST00000507293 CLTBP09497 229 aa13.68□□□□□ -0.22
HMGCS1-204ENST00000507293 FDX1P10109 184 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms