RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 PDXDC2PQ6P474 469 aa19.14■□□□□ 0.66
SQSTM1-211ENST00000506690 IFNL3Q8IZI9 196 aa19.14■□□□□ 0.66
SQSTM1-211ENST00000506690 HDAC7Q8WUI4 952 aa19.14■□□□□ 0.66
SQSTM1-211ENST00000506690 ZBTB3Q9H5J0 574 aa19.14■□□□□ 0.66
SQSTM1-211ENST00000506690 DMGDHQ9UI17 866 aaKnown RBP19.14■□□□□ 0.66
SQSTM1-211ENST00000506690 DISP2A7MBM2 1401 aa19.14■□□□□ 0.65
SQSTM1-211ENST00000506690 PATL2C9JE40 543 aaKnown RBP19.14■□□□□ 0.65
SQSTM1-211ENST00000506690 H7C1D1 291 aa19.14■□□□□ 0.65
SQSTM1-211ENST00000506690 WNT7AO00755 349 aa19.14■□□□□ 0.65
SQSTM1-211ENST00000506690 GTPBP6O43824 516 aaPredicted RBP19.14■□□□□ 0.65
SQSTM1-211ENST00000506690 PARP1P09874 1014 aaKnown RBP19.14■□□□□ 0.65
SQSTM1-211ENST00000506690 TTC19Q6DKK2 380 aaPredicted RBP19.14■□□□□ 0.65
SQSTM1-211ENST00000506690 FANCBQ8NB91 859 aa19.14■□□□□ 0.65
SQSTM1-211ENST00000506690 JADE2Q9NQC1 790 aa19.14■□□□□ 0.65
SQSTM1-211ENST00000506690 DONSONQ9NYP3 566 aa19.14■□□□□ 0.65
SQSTM1-211ENST00000506690 NDUFAB1O14561 156 aa19.13■□□□□ 0.65
SQSTM1-211ENST00000506690 CYP27B1O15528 508 aa19.13■□□□□ 0.65
SQSTM1-211ENST00000506690 CYLC1P35663 651 aaPredicted RBP19.13■□□□□ 0.65
SQSTM1-211ENST00000506690 WTAPQ15007 396 aa19.13■□□□□ 0.65
SQSTM1-211ENST00000506690 CHRNA2Q15822 529 aa19.13■□□□□ 0.65
SQSTM1-211ENST00000506690 EZH2Q15910 746 aaKnown RBP19.13■□□□□ 0.65
SQSTM1-211ENST00000506690 SECISBP2LQ93073 1101 aaKnown RBP19.13■□□□□ 0.65
SQSTM1-211ENST00000506690 ARL8AQ96BM9 186 aa19.13■□□□□ 0.65
SQSTM1-211ENST00000506690 PAGR1Q9BTK6 254 aa19.13■□□□□ 0.65
SQSTM1-211ENST00000506690 LRRC1Q9BTT6 524 aa19.13■□□□□ 0.65
SQSTM1-211ENST00000506690 CEP83Q9Y592 693 aa19.13■□□□□ 0.65
SQSTM1-211ENST00000506690 MEFVO15553 781 aaPredicted RBP19.13■□□□□ 0.65
SQSTM1-211ENST00000506690 ZEB2O60315 1214 aa19.13■□□□□ 0.65
SQSTM1-211ENST00000506690 CSB-PGBD3P0DP91 1061 aa19.13■□□□□ 0.65
SQSTM1-211ENST00000506690 RNF26Q9BY78 433 aaPredicted RBP19.13■□□□□ 0.65
SQSTM1-211ENST00000506690 SNX12Q9UMY4 172 aa19.13■□□□□ 0.65
SQSTM1-211ENST00000506690 PDS5AQ29RF7 1337 aaKnown RBP19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 EPHB4P54760 987 aa19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 EMBQ6PCB8 327 aa19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 CCDC170Q8IYT3 715 aa19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 TSEN2Q8NCE0 465 aaKnown RBP19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 HINFPQ9BQA5 517 aa19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 ZKSCAN3Q9BRR0 538 aa19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 PHF20Q9BVI0 1012 aa19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 TTYH3Q9C0H2 523 aa19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 NAPBQ9H115 298 aa19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 DUSP10Q9Y6W6 482 aa19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 KRT2P35908 639 aa19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 PRCPP42785 496 aa19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 CABP4P57796 275 aa19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 MFSD6Q6ZSS7 791 aa19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 YTHDF3Q7Z739 585 aaKnown RBP19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 OTUD6BQ8N6M0 293 aa19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 CAVIN3Q969G5 261 aa19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 MTA3Q9BTC8 594 aa19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 RMND1Q9NWS8 449 aa19.12■□□□□ 0.65
SQSTM1-211ENST00000506690 SPATA31A3Q5VYP0 1347 aa19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 TNS3Q68CZ2 1445 aa19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 MYO1FO00160 1098 aa19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 GPTP24298 496 aa19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 EEF1GP26641 437 aaKnown RBP19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 ATP2C1P98194 919 aaPredicted RBP19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 SETQ01105 290 aaPredicted RBP19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 PDCLQ13371 301 aa19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 BRINP3Q76B58 766 aa19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 TMTC2Q8N394 836 aa19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 TACO1Q9BSH4 297 aaKnown RBP19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 ISCA1Q9BUE6 129 aa19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 NHEJ1Q9H9Q4 299 aaPredicted RBP19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 RIPOR2Q9Y4F9 1068 aa19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 MYH2Q9UKX2 1941 aa19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 KIAA0754O94854 1291 aa19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 PRLRP16471 622 aa19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 TNFRSF8P28908 595 aa19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 ZNF654Q8IZM8 581 aa19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 SPATA4Q8NEY3 305 aa19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 STAG1Q8WVM7 1258 aa19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 PYM1Q9BRP8 204 aaKnown RBP19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 GDAQ9Y2T3 454 aa19.11■□□□□ 0.65
SQSTM1-211ENST00000506690 KIF1CO43896 1103 aaKnown RBP19.1■□□□□ 0.65
SQSTM1-211ENST00000506690 RPN1P04843 607 aaKnown RBP19.1■□□□□ 0.65
SQSTM1-211ENST00000506690 CSF1RP07333 972 aa19.1■□□□□ 0.65
SQSTM1-211ENST00000506690 XBP1P17861 261 aa19.1■□□□□ 0.65
SQSTM1-211ENST00000506690 PKN1Q16512 942 aa19.1■□□□□ 0.65
SQSTM1-211ENST00000506690 CCDC85AQ96PX6 553 aaPredicted RBP19.1■□□□□ 0.65
SQSTM1-211ENST00000506690 MACROD2A1Z1Q3 448 aa19.1■□□□□ 0.65
SQSTM1-211ENST00000506690 IPO7O95373 1038 aaKnown RBP19.1■□□□□ 0.65
SQSTM1-211ENST00000506690 IFIT5Q13325 482 aaKnown RBP19.1■□□□□ 0.65
SQSTM1-211ENST00000506690 TCIRG1Q13488 830 aa19.1■□□□□ 0.65
SQSTM1-211ENST00000506690 ZNF174Q15697 407 aa19.1■□□□□ 0.65
SQSTM1-211ENST00000506690 METTL24Q5JXM2 366 aa19.1■□□□□ 0.65
SQSTM1-211ENST00000506690 EMC10Q5UCC4 262 aa19.1■□□□□ 0.65
SQSTM1-211ENST00000506690 AGPAT5Q9NUQ2 364 aa19.1■□□□□ 0.65
SQSTM1-211ENST00000506690 MAPK8IP1Q9UQF2 711 aa19.1■□□□□ 0.65
SQSTM1-211ENST00000506690 HSF2BPO75031 334 aa19.09■□□□□ 0.65
SQSTM1-211ENST00000506690 A1BGP04217 495 aa19.09■□□□□ 0.65
SQSTM1-211ENST00000506690 SRGNP10124 158 aa19.09■□□□□ 0.65
SQSTM1-211ENST00000506690 VAV2P52735 878 aa19.09■□□□□ 0.65
SQSTM1-211ENST00000506690 PPARAQ07869 468 aa19.09■□□□□ 0.65
SQSTM1-211ENST00000506690 KIF5AQ12840 1032 aa19.09■□□□□ 0.65
SQSTM1-211ENST00000506690 PTGDRQ13258 359 aa19.09■□□□□ 0.65
SQSTM1-211ENST00000506690 ADSSL1Q8N142 457 aa19.09■□□□□ 0.65
SQSTM1-211ENST00000506690 TRIM58Q8NG06 486 aa19.09■□□□□ 0.65
SQSTM1-211ENST00000506690 NUP133Q8WUM0 1156 aa19.09■□□□□ 0.65
SQSTM1-211ENST00000506690 TNFRSF25Q93038 417 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms