RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 SYNE4Q8N205 404 aa11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 PSTPIP2Q9H939 334 aa11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 PRM3Q9NNZ6 103 aa11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 SWAP70Q9UH65 585 aa11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 RWDD2AQ9UIY3 292 aa11.98□□□□□ -0.49
LIMCH1-205ENST00000503057 H0YIN7 160 aa11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 EEF1GP26641 437 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 MAGEA1P43355 309 aa11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 MYOCDQ8IZQ8 938 aa11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 PNPLA7Q6ZV29 1317 aa11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 PTPREP23469 700 aa11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 ARL6IP4Q66PJ3 421 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 C8orf74Q6P047 294 aa11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 DHTKD1Q96HY7 919 aaPredicted RBP11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 IFIH1Q9BYX4 1025 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 HAUS4Q9H6D7 363 aa11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 CSF1RP07333 972 aa11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 FAM76AQ8TAV0 307 aa11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 SAR1BQ9Y6B6 198 aa11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 SMC1AQ14683 1233 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 RNF187Q5TA31 235 aaPredicted RBP11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 PAGE5Q96GU1 130 aa11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 SCLT1Q96NL6 688 aa11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 MON2Q7Z3U7 1717 aa11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 TRIM58Q8NG06 486 aa11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 IFT81Q8WYA0 676 aa11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 DDX25Q9UHL0 483 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-205ENST00000503057 SCARF1Q14162 830 aa11.96□□□□□ -0.49
LIMCH1-205ENST00000503057 TMTC3Q6ZXV5 915 aa11.96□□□□□ -0.49
LIMCH1-205ENST00000503057 GRAMD1CQ8IYS0 662 aa11.96□□□□□ -0.49
LIMCH1-205ENST00000503057 STMN4Q9H169 189 aaPredicted RBP11.96□□□□□ -0.49
LIMCH1-205ENST00000503057 MYO1AQ9UBC5 1043 aa11.96□□□□□ -0.49
LIMCH1-205ENST00000503057 CASP14P31944 242 aa11.96□□□□□ -0.49
LIMCH1-205ENST00000503057 TYW1BQ6NUM6 668 aa11.96□□□□□ -0.49
LIMCH1-205ENST00000503057 LRRC47Q8N1G4 583 aaKnown RBP11.96□□□□□ -0.49
LIMCH1-205ENST00000503057 NAP1L3Q99457 506 aaPredicted RBP11.96□□□□□ -0.49
LIMCH1-205ENST00000503057 GJB4Q9NTQ9 266 aa11.96□□□□□ -0.49
LIMCH1-205ENST00000503057 UBN2Q6ZU65 1347 aa11.96□□□□□ -0.49
LIMCH1-205ENST00000503057 ARHGAP23Q9P227 1491 aa11.96□□□□□ -0.49
LIMCH1-205ENST00000503057 PLEKHG2Q9H7P9 1386 aa11.96□□□□□ -0.5
LIMCH1-205ENST00000503057 CHMP2AO43633 222 aa11.96□□□□□ -0.5
LIMCH1-205ENST00000503057 CDC27P30260 824 aa11.96□□□□□ -0.5
LIMCH1-205ENST00000503057 RBL2Q08999 1139 aa11.96□□□□□ -0.5
LIMCH1-205ENST00000503057 DHX40Q8IX18 779 aaKnown RBP11.96□□□□□ -0.5
LIMCH1-205ENST00000503057 FAM207AQ9NSI2 230 aaPredicted RBP11.96□□□□□ -0.5
LIMCH1-205ENST00000503057 PCDHA12Q9UN75 941 aa11.96□□□□□ -0.5
LIMCH1-205ENST00000503057 CTNNA2P26232 953 aa11.96□□□□□ -0.5
LIMCH1-205ENST00000503057 HOXA7P31268 230 aaPredicted RBP11.96□□□□□ -0.5
LIMCH1-205ENST00000503057 TCP10Q12799 353 aa11.96□□□□□ -0.5
LIMCH1-205ENST00000503057 KNDC1Q76NI1 1749 aa11.96□□□□□ -0.5
LIMCH1-205ENST00000503057 RRAGAQ7L523 313 aa11.96□□□□□ -0.5
LIMCH1-205ENST00000503057 CCDC26Q8TAB7 109 aa11.96□□□□□ -0.5
LIMCH1-205ENST00000503057 TBC1D7Q9P0N9 293 aa11.96□□□□□ -0.5
LIMCH1-205ENST00000503057 CYP2D7A0A087X1C5 515 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 GRAPQ13588 217 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 USH1GQ495M9 461 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 CFAP58Q5T655 872 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 DGKHQ86XP1 1220 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 C2CD5Q86YS7 1000 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 IFT20Q8IY31 132 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 GRAPLQ8TC17 118 aaPredicted RBP11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 GSG1L2A8MUP6 293 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 KLHL30Q0D2K2 578 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 ZRSR2Q15696 482 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 GPBP1Q86WP2 473 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 NELFCDQ8IXH7 590 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 PANX2Q96RD6 677 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 UBR1Q8IWV7 1749 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 ARHGEF35A5YM69 484 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 PHACTR2O75167 634 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 BBOX1O75936 387 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 PLEKHA8P1O95397 391 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 AFAP1L1Q8TED9 768 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 MRPL44Q9H9J2 332 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 PANK4Q9NVE7 773 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 RSPH14Q9UHP6 348 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 PLS1Q14651 629 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 GPATCH4Q5T3I0 446 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 RETREG2Q8NC44 543 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 JDP2Q8WYK2 163 aa11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 OSBPL5Q9H0X9 879 aaPredicted RBP11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 EPN1Q9Y6I3 576 aaPredicted RBP11.95□□□□□ -0.5
LIMCH1-205ENST00000503057 ARFGAP2Q8N6H7 521 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 MINPP1Q9UNW1 487 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 PXDNQ92626 1479 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 PPEF1O14829 653 aaPredicted RBP11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 FLOT1O75955 427 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 USP17L8P0C7I0 530 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 TNFAIP3P21580 790 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 CFAP221Q4G0U5 840 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 FLAD1Q8NFF5 587 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 CNOT6LQ96LI5 555 aaKnown RBP11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 TRERF1Q96PN7 1200 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 SAMSN1Q9NSI8 373 aaKnown RBP11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 ZBTB21Q9ULJ3 1066 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 GCNT3O95395 438 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 OAS2P29728 719 aaKnown RBP11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 NKX1-1Q15270 411 aaPredicted RBP11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 CCDC17Q96LX7 622 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 IMPG2Q9BZV3 1241 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms