RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 MMP19Q99542 508 aa18.61■□□□□ 0.57
HDAC4-213ENST00000496347 NBPF3Q9H094 633 aa18.61■□□□□ 0.57
HDAC4-213ENST00000496347 STX8Q9UNK0 236 aa18.61■□□□□ 0.57
HDAC4-213ENST00000496347 NR2E3Q9Y5X4 410 aa18.61■□□□□ 0.57
HDAC4-213ENST00000496347 COBLO75128 1261 aa18.6■□□□□ 0.57
HDAC4-213ENST00000496347 FDX1P10109 184 aa18.6■□□□□ 0.57
HDAC4-213ENST00000496347 BMP3P12645 472 aa18.6■□□□□ 0.57
HDAC4-213ENST00000496347 NOVP48745 357 aa18.6■□□□□ 0.57
HDAC4-213ENST00000496347 MNX1P50219 401 aaPredicted RBP18.6■□□□□ 0.57
HDAC4-213ENST00000496347 STAT2P52630 851 aa18.6■□□□□ 0.57
HDAC4-213ENST00000496347 LHX8Q68G74 356 aa18.6■□□□□ 0.57
HDAC4-213ENST00000496347 SNRNP48Q6IEG0 339 aaKnown RBP18.6■□□□□ 0.57
HDAC4-213ENST00000496347 SLC38A10Q9HBR0 1119 aa18.6■□□□□ 0.57
HDAC4-213ENST00000496347 DDX20Q9UHI6 824 aaKnown RBP18.6■□□□□ 0.57
HDAC4-213ENST00000496347 ZBED4O75132 1171 aa18.59■□□□□ 0.57
HDAC4-213ENST00000496347 SLC34A2O95436 690 aa18.59■□□□□ 0.57
HDAC4-213ENST00000496347 CYP2C19P33261 490 aa18.59■□□□□ 0.57
HDAC4-213ENST00000496347 SLC1A4P43007 532 aa18.59■□□□□ 0.57
HDAC4-213ENST00000496347 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.59■□□□□ 0.57
HDAC4-213ENST00000496347 FAM160B2Q86V87 743 aa18.59■□□□□ 0.57
HDAC4-213ENST00000496347 STAG1Q8WVM7 1258 aa18.59■□□□□ 0.57
HDAC4-213ENST00000496347 KIFC2Q96AC6 838 aa18.59■□□□□ 0.57
HDAC4-213ENST00000496347 MAML3Q96JK9 1138 aa18.59■□□□□ 0.57
HDAC4-213ENST00000496347 RNF41Q9H4P4 317 aaPredicted RBP18.59■□□□□ 0.57
HDAC4-213ENST00000496347 C11orf49Q9H6J7 331 aa18.59■□□□□ 0.57
HDAC4-213ENST00000496347 IL17RBQ9NRM6 502 aa18.59■□□□□ 0.57
HDAC4-213ENST00000496347 NRBP1Q9UHY1 535 aa18.59■□□□□ 0.57
HDAC4-213ENST00000496347 DIS3Q9Y2L1 958 aaKnown RBP18.59■□□□□ 0.57
HDAC4-213ENST00000496347 CTDP1Q9Y5B0 961 aaPredicted RBP18.59■□□□□ 0.57
HDAC4-213ENST00000496347 LAMA3Q16787 3333 aa18.58■□□□□ 0.57
HDAC4-213ENST00000496347 EVI5O60447 810 aa18.58■□□□□ 0.56
HDAC4-213ENST00000496347 NMT2O60551 498 aa18.58■□□□□ 0.56
HDAC4-213ENST00000496347 PLA2G6O60733 806 aa18.58■□□□□ 0.56
HDAC4-213ENST00000496347 CWC27Q6UX04 472 aaKnown RBP18.58■□□□□ 0.56
HDAC4-213ENST00000496347 TOMM22Q9NS69 142 aa18.58■□□□□ 0.56
HDAC4-213ENST00000496347 RAD50Q92878 1312 aa18.57■□□□□ 0.56
HDAC4-213ENST00000496347 AKNAD1Q5T1N1 836 aa18.57■□□□□ 0.56
HDAC4-213ENST00000496347 TTC22Q5TAA0 569 aa18.57■□□□□ 0.56
HDAC4-213ENST00000496347 MFSD6Q6ZSS7 791 aa18.57■□□□□ 0.56
HDAC4-213ENST00000496347 TBC1D10CQ8IV04 446 aa18.57■□□□□ 0.56
HDAC4-213ENST00000496347 TRPV1Q8NER1 839 aa18.57■□□□□ 0.56
HDAC4-213ENST00000496347 CHURC1Q8WUH1 139 aa18.57■□□□□ 0.56
HDAC4-213ENST00000496347 INCENPQ9NQS7 918 aa18.57■□□□□ 0.56
HDAC4-213ENST00000496347 TCP11L1Q9NUJ3 509 aa18.57■□□□□ 0.56
HDAC4-213ENST00000496347 FBXO40Q9UH90 709 aa18.57■□□□□ 0.56
HDAC4-213ENST00000496347 ISY1Q9ULR0 285 aaKnown RBP18.57■□□□□ 0.56
HDAC4-213ENST00000496347 TACC3Q9Y6A5 838 aa18.57■□□□□ 0.56
HDAC4-213ENST00000496347 PFASO15067 1338 aa18.56■□□□□ 0.56
HDAC4-213ENST00000496347 TMEM232C9JQI7 657 aa18.56■□□□□ 0.56
HDAC4-213ENST00000496347 SEPT4O43236 478 aa18.56■□□□□ 0.56
HDAC4-213ENST00000496347 COL6A1P12109 1028 aa18.56■□□□□ 0.56
HDAC4-213ENST00000496347 PDE4AP27815 886 aa18.56■□□□□ 0.56
HDAC4-213ENST00000496347 HAND2P61296 217 aa18.56■□□□□ 0.56
HDAC4-213ENST00000496347 IRX6P78412 446 aaPredicted RBP18.56■□□□□ 0.56
HDAC4-213ENST00000496347 ZNF792Q3KQV3 632 aa18.56■□□□□ 0.56
HDAC4-213ENST00000496347 RRP12Q5JTH9 1297 aaKnown RBP18.56■□□□□ 0.56
HDAC4-213ENST00000496347 MSL3Q8N5Y2 521 aaKnown RBP18.56■□□□□ 0.56
HDAC4-213ENST00000496347 DCAF4Q8WV16 495 aa18.56■□□□□ 0.56
HDAC4-213ENST00000496347 DSCC1Q9BVC3 393 aa18.56■□□□□ 0.56
HDAC4-213ENST00000496347 MCM3APO60318 1980 aa18.55■□□□□ 0.56
HDAC4-213ENST00000496347 DNM1LO00429 736 aa18.55■□□□□ 0.56
HDAC4-213ENST00000496347 PGK2P07205 417 aa18.55■□□□□ 0.56
HDAC4-213ENST00000496347 TOP1P11387 765 aaKnown RBP18.55■□□□□ 0.56
HDAC4-213ENST00000496347 GSPT1P15170 499 aaKnown RBP18.55■□□□□ 0.56
HDAC4-213ENST00000496347 CNGA1P29973 690 aa18.55■□□□□ 0.56
HDAC4-213ENST00000496347 IKQ13123 557 aaPredicted RBP18.55■□□□□ 0.56
HDAC4-213ENST00000496347 HABP4Q5JVS0 413 aaKnown RBP18.55■□□□□ 0.56
HDAC4-213ENST00000496347 CPXCR1Q8N123 301 aa18.55■□□□□ 0.56
HDAC4-213ENST00000496347 CHST13Q8NET6 341 aa18.55■□□□□ 0.56
HDAC4-213ENST00000496347 NEDD4P46934 1319 aa18.54■□□□□ 0.56
HDAC4-213ENST00000496347 DNAJC25-GNG10A0A024R161 153 aa18.54■□□□□ 0.56
HDAC4-213ENST00000496347 MCCP23508 829 aa18.54■□□□□ 0.56
HDAC4-213ENST00000496347 ESR2Q92731 530 aa18.54■□□□□ 0.56
HDAC4-213ENST00000496347 TINF2Q9BSI4 451 aa18.54■□□□□ 0.56
HDAC4-213ENST00000496347 RAVER2Q9HCJ3 691 aaKnown RBP18.54■□□□□ 0.56
HDAC4-213ENST00000496347 RIPK3Q9Y572 518 aa18.54■□□□□ 0.56
HDAC4-213ENST00000496347 SYNGAP1Q96PV0 1343 aa18.53■□□□□ 0.56
HDAC4-213ENST00000496347 SMCHD1A6NHR9 2005 aa18.53■□□□□ 0.56
HDAC4-213ENST00000496347 LRRC37A2A6NM11 1700 aa18.53■□□□□ 0.56
HDAC4-213ENST00000496347 ZNF213O14771 459 aa18.53■□□□□ 0.56
HDAC4-213ENST00000496347 CCDC96Q2M329 555 aa18.53■□□□□ 0.56
HDAC4-213ENST00000496347 RCSD1Q6JBY9 416 aa18.53■□□□□ 0.56
HDAC4-213ENST00000496347 ZNF467Q7Z7K2 595 aaPredicted RBP18.53■□□□□ 0.56
HDAC4-213ENST00000496347 ACAD9Q9H845 621 aa18.53■□□□□ 0.56
HDAC4-213ENST00000496347 CTNNA3Q9UI47 895 aa18.53■□□□□ 0.56
HDAC4-213ENST00000496347 IMMTQ16891 758 aaKnown RBP18.52■□□□□ 0.56
HDAC4-213ENST00000496347 TKFCQ3LXA3 575 aa18.52■□□□□ 0.56
HDAC4-213ENST00000496347 KCTD1Q719H9 257 aa18.52■□□□□ 0.56
HDAC4-213ENST00000496347 RASGRP2Q7LDG7 609 aa18.52■□□□□ 0.56
HDAC4-213ENST00000496347 DDX11Q96FC9 970 aa18.52■□□□□ 0.56
HDAC4-213ENST00000496347 TTC14Q96N46 770 aa18.52■□□□□ 0.56
HDAC4-213ENST00000496347 TMEM47Q9BQJ4 181 aa18.52■□□□□ 0.56
HDAC4-213ENST00000496347 COLQQ9Y215 455 aaPredicted RBP18.52■□□□□ 0.56
HDAC4-213ENST00000496347 CNPY2Q9Y2B0 182 aa18.52■□□□□ 0.56
HDAC4-213ENST00000496347 MAMDC4Q6UXC1 1216 aa18.51■□□□□ 0.55
HDAC4-213ENST00000496347 CHRDL2Q6WN34 429 aa18.51■□□□□ 0.55
HDAC4-213ENST00000496347 C7orf61Q8IZ16 206 aa18.51■□□□□ 0.55
HDAC4-213ENST00000496347 ARRDC4Q8NCT1 418 aa18.51■□□□□ 0.55
HDAC4-213ENST00000496347 PRR12Q9ULL5 1215 aa18.51■□□□□ 0.55
HDAC4-213ENST00000496347 LCTP09848 1927 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms