RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 TTYH3Q9C0H2 523 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 NAPBQ9H115 298 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 EPB41L4AQ9HCS5 686 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-230ENST00000495090 PIH1D3Q9NQM4 214 aaKnown RBP10.84□□□□□ -0.67
SYNE1-230ENST00000495090 RNF216Q9NWF9 866 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-230ENST00000495090 SNX12Q9UMY4 172 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 RIPOR2Q9Y4F9 1068 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 SOS2Q07890 1332 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-230ENST00000495090 PDE2AO00408 941 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-230ENST00000495090 CYP27B1O15528 508 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 PCCAP05165 728 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-230ENST00000495090 PARP1P09874 1014 aaKnown RBP10.84□□□□□ -0.67
SYNE1-230ENST00000495090 UQCRFS1P1P0C7P4 283 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 CASP1P29466 404 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 TRAPPC10P48553 1259 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 FNTAP49354 379 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 CEBPAP49715 358 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-230ENST00000495090 DNM2P50570 870 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 IFIT5Q13325 482 aaKnown RBP10.84□□□□□ -0.67
SYNE1-230ENST00000495090 PLCB4Q15147 1175 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 SND1Q7KZF4 910 aaKnown RBP eCLIP10.84□□□□□ -0.67
SYNE1-230ENST00000495090 CAPZA3Q96KX2 299 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 GNL3LQ9NVN8 582 aaKnown RBP10.84□□□□□ -0.67
SYNE1-230ENST00000495090 ZNHIT6Q9NWK9 470 aaKnown RBP10.84□□□□□ -0.67
SYNE1-230ENST00000495090 PAPPAQ13219 1627 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 RTL9Q8NET4 1388 aa10.83□□□□□ -0.68
SYNE1-230ENST00000495090 MEFVO15553 781 aaPredicted RBP10.83□□□□□ -0.68
SYNE1-230ENST00000495090 KIAA0754O94854 1291 aa10.83□□□□□ -0.68
SYNE1-230ENST00000495090 SRGNP10124 158 aa10.83□□□□□ -0.68
SYNE1-230ENST00000495090 IDEP14735 1019 aa10.83□□□□□ -0.68
SYNE1-230ENST00000495090 GNAT2P19087 354 aa10.83□□□□□ -0.68
SYNE1-230ENST00000495090 PSEN1P49768 467 aa10.83□□□□□ -0.68
SYNE1-230ENST00000495090 VAV2P52735 878 aa10.83□□□□□ -0.68
SYNE1-230ENST00000495090 GLE1Q53GS7 698 aaKnown RBP10.83□□□□□ -0.68
SYNE1-230ENST00000495090 FIGNQ5HY92 759 aa10.83□□□□□ -0.68
SYNE1-230ENST00000495090 IRF2BP1Q8IU81 584 aa10.83□□□□□ -0.68
SYNE1-230ENST00000495090 CREG2Q8IUH2 290 aa10.83□□□□□ -0.68
SYNE1-230ENST00000495090 ZNF654Q8IZM8 581 aa10.83□□□□□ -0.68
SYNE1-230ENST00000495090 CCDC155Q8N6L0 562 aa10.83□□□□□ -0.68
SYNE1-230ENST00000495090 TNFRSF25Q93038 417 aa10.83□□□□□ -0.68
SYNE1-230ENST00000495090 RNF41Q9H4P4 317 aaPredicted RBP10.83□□□□□ -0.68
SYNE1-230ENST00000495090 DONSONQ9NYP3 566 aa10.83□□□□□ -0.68
SYNE1-230ENST00000495090 DOCK2Q92608 1830 aa10.83□□□□□ -0.68
SYNE1-230ENST00000495090 MYH13Q9UKX3 1938 aa10.83□□□□□ -0.68
SYNE1-230ENST00000495090 ALS2Q96Q42 1657 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 ARAP2Q8WZ64 1704 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 A0A1W2PQJ5 194 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 HSF2BPO75031 334 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 IDH1O75874 414 aaKnown RBP10.82□□□□□ -0.68
SYNE1-230ENST00000495090 RPN1P04843 607 aaKnown RBP10.82□□□□□ -0.68
SYNE1-230ENST00000495090 MYL1P05976 194 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 CCDC172P0C7W6 258 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 TCP1P17987 556 aaKnown RBP10.82□□□□□ -0.68
SYNE1-230ENST00000495090 ZBED6P86452 979 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 KIF5AQ12840 1032 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 TCIRG1Q13488 830 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 KCNB1Q14721 858 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 METTL24Q5JXM2 366 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 FBXW10Q5XX13 1052 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 KDM7AQ6ZMT4 941 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 PAXIP1Q6ZW49 1069 aaPredicted RBP10.82□□□□□ -0.68
SYNE1-230ENST00000495090 GSPT2Q8IYD1 628 aaKnown RBP10.82□□□□□ -0.68
SYNE1-230ENST00000495090 ADSSL1Q8N142 457 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 VGLL2Q8N8G2 317 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 SECISBP2LQ93073 1101 aaKnown RBP10.82□□□□□ -0.68
SYNE1-230ENST00000495090 RUFY1Q96T51 708 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 NLRP2Q9NX02 1062 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 KCPQ6ZWJ8 1503 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 MYH6P13533 1939 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 NDUFAB1O14561 156 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 PRPF3O43395 683 aaKnown RBP10.82□□□□□ -0.68
SYNE1-230ENST00000495090 C21orf2O43822 256 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 ZMYND10O75800 440 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 C2orf54Q08AI8 447 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 DRP2Q13474 957 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 PKN1Q16512 942 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 TTC38Q5R3I4 469 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 CD302Q8IX05 232 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 OTUD6BQ8N6M0 293 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 GPATCH11Q8N954 259 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 MTRQ99707 1265 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 NACAP1Q9BZK3 213 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 LACRTQ9GZZ8 138 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 NHEJ1Q9H9Q4 299 aaPredicted RBP10.82□□□□□ -0.68
SYNE1-230ENST00000495090 JADE2Q9NQC1 790 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 TACC3Q9Y6A5 838 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 PNPLA7Q6ZV29 1317 aa10.82□□□□□ -0.68
SYNE1-230ENST00000495090 COL18A1P39060 1754 aa10.81□□□□□ -0.68
SYNE1-230ENST00000495090 KIF13AQ9H1H9 1805 aa10.81□□□□□ -0.68
SYNE1-230ENST00000495090 RCCD1A6NED2 376 aa10.81□□□□□ -0.68
SYNE1-230ENST00000495090 NUTM2BA6NNL0 878 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-230ENST00000495090 GSG1L2A8MUP6 293 aa10.81□□□□□ -0.68
SYNE1-230ENST00000495090 NUTM2EB1AL46 878 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-230ENST00000495090 ZNF185O15231 689 aa10.81□□□□□ -0.68
SYNE1-230ENST00000495090 USO1O60763 962 aaKnown RBP10.81□□□□□ -0.68
SYNE1-230ENST00000495090 TACC1O75410 805 aa10.81□□□□□ -0.68
SYNE1-230ENST00000495090 GPTP24298 496 aa10.81□□□□□ -0.68
SYNE1-230ENST00000495090 HNRNPH3P31942 346 aaKnown RBP10.81□□□□□ -0.68
SYNE1-230ENST00000495090 PRCPP42785 496 aa10.81□□□□□ -0.68
SYNE1-230ENST00000495090 CTDSPL2Q05D32 466 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms