RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 COPB2P35606 906 aa39.25■■■■□ 3.87
CBX4-203ENST00000494546 SLC1A4P43007 532 aa39.25■■■■□ 3.87
CBX4-203ENST00000494546 SLC4A3P48751 1232 aa39.25■■■■□ 3.87
CBX4-203ENST00000494546 SNRNP48Q6IEG0 339 aaKnown RBP39.25■■■■□ 3.87
CBX4-203ENST00000494546 TBC1D10CQ8IV04 446 aa39.25■■■■□ 3.87
CBX4-203ENST00000494546 CPXCR1Q8N123 301 aa39.25■■■■□ 3.87
CBX4-203ENST00000494546 PAWRQ96IZ0 340 aaKnown RBP39.25■■■■□ 3.87
CBX4-203ENST00000494546 TMEM232C9JQI7 657 aa39.24■■■■□ 3.87
CBX4-203ENST00000494546 ANKLE1Q8NAG6 615 aa39.24■■■■□ 3.87
CBX4-203ENST00000494546 DIS3LQ8TF46 1054 aaKnown RBP39.24■■■■□ 3.87
CBX4-203ENST00000494546 GMCL1Q96IK5 515 aa39.24■■■■□ 3.87
CBX4-203ENST00000494546 MTMR7Q9Y216 660 aa39.24■■■■□ 3.87
CBX4-203ENST00000494546 ZNF213O14771 459 aa39.23■■■■□ 3.87
CBX4-203ENST00000494546 IKQ13123 557 aaPredicted RBP39.23■■■■□ 3.87
CBX4-203ENST00000494546 KCTD2Q14681 263 aa39.23■■■■□ 3.87
CBX4-203ENST00000494546 OLFML2BQ68BL8 750 aa39.23■■■■□ 3.87
CBX4-203ENST00000494546 STAG1Q8WVM7 1258 aa39.23■■■■□ 3.87
CBX4-203ENST00000494546 OGDHLQ9ULD0 1010 aa39.23■■■■□ 3.87
CBX4-203ENST00000494546 RNF41Q9H4P4 317 aaPredicted RBP39.22■■■■□ 3.87
CBX4-203ENST00000494546 SLC38A10Q9HBR0 1119 aa39.22■■■■□ 3.87
CBX4-203ENST00000494546 RAVER2Q9HCJ3 691 aaKnown RBP39.22■■■■□ 3.87
CBX4-203ENST00000494546 PGK2P07205 417 aa39.21■■■■□ 3.87
CBX4-203ENST00000494546 PCP11498 1178 aaKnown RBP39.21■■■■□ 3.87
CBX4-203ENST00000494546 CNGA1P29973 690 aa39.21■■■■□ 3.87
CBX4-203ENST00000494546 STAT2P52630 851 aa39.21■■■■□ 3.87
CBX4-203ENST00000494546 NECAB2Q7Z6G3 386 aa39.21■■■■□ 3.87
CBX4-203ENST00000494546 DSCC1Q9BVC3 393 aa39.21■■■■□ 3.87
CBX4-203ENST00000494546 RIPK3Q9Y572 518 aa39.21■■■■□ 3.87
CBX4-203ENST00000494546 NOVP48745 357 aa39.2■■■■□ 3.87
CBX4-203ENST00000494546 KCTD1Q719H9 257 aa39.2■■■■□ 3.87
CBX4-203ENST00000494546 ATP2A1O14983 1001 aa39.19■■■■□ 3.86
CBX4-203ENST00000494546 IGHA2P01877 340 aa39.19■■■■□ 3.86
CBX4-203ENST00000494546 LHX8Q68G74 356 aa39.19■■■■□ 3.86
CBX4-203ENST00000494546 RASGRP2Q7LDG7 609 aa39.19■■■■□ 3.86
CBX4-203ENST00000494546 FAM160B2Q86V87 743 aa39.19■■■■□ 3.86
CBX4-203ENST00000494546 CHURC1Q8WUH1 139 aa39.19■■■■□ 3.86
CBX4-203ENST00000494546 MAML3Q96JK9 1138 aa39.19■■■■□ 3.86
CBX4-203ENST00000494546 TCP11L1Q9NUJ3 509 aa39.19■■■■□ 3.86
CBX4-203ENST00000494546 NEDD4P46934 1319 aa39.18■■■■□ 3.86
CBX4-203ENST00000494546 RCSD1Q6JBY9 416 aa39.18■■■■□ 3.86
CBX4-203ENST00000494546 IL25Q9H293 177 aa39.18■■■■□ 3.86
CBX4-203ENST00000494546 TRPV1Q8NER1 839 aa39.17■■■■□ 3.86
CBX4-203ENST00000494546 H0YGN5 161 aa39.16■■■■□ 3.86
CBX4-203ENST00000494546 TOP1P11387 765 aaKnown RBP39.16■■■■□ 3.86
CBX4-203ENST00000494546 CYBAP13498 195 aa39.16■■■■□ 3.86
CBX4-203ENST00000494546 MNX1P50219 401 aaPredicted RBP39.16■■■■□ 3.86
CBX4-203ENST00000494546 CCDC96Q2M329 555 aa39.16■■■■□ 3.86
CBX4-203ENST00000494546 ESR2Q92731 530 aa39.16■■■■□ 3.86
CBX4-203ENST00000494546 TMEM47Q9BQJ4 181 aa39.16■■■■□ 3.86
CBX4-203ENST00000494546 DDX20Q9UHI6 824 aaKnown RBP39.16■■■■□ 3.86
CBX4-203ENST00000494546 FDX1P10109 184 aa39.15■■■■□ 3.86
CBX4-203ENST00000494546 IMMTQ16891 758 aaKnown RBP39.15■■■■□ 3.86
CBX4-203ENST00000494546 CTNNA3Q9UI47 895 aa39.15■■■■□ 3.86
CBX4-203ENST00000494546 OAZ1P54368 228 aa39.14■■■■□ 3.86
CBX4-203ENST00000494546 ZNF792Q3KQV3 632 aa39.14■■■■□ 3.86
CBX4-203ENST00000494546 DCAF4Q8WV16 495 aa39.14■■■■□ 3.86
CBX4-203ENST00000494546 C11orf49Q9H6J7 331 aa39.14■■■■□ 3.86
CBX4-203ENST00000494546 PLA2G6O60733 806 aa39.13■■■■□ 3.85
CBX4-203ENST00000494546 PRAMEF19Q5SWL8 479 aa39.13■■■■□ 3.85
CBX4-203ENST00000494546 DDX11Q96FC9 970 aa39.13■■■■□ 3.85
CBX4-203ENST00000494546 ZNFX1Q9P2E3 1918 aaKnown RBP39.12■■■■□ 3.85
CBX4-203ENST00000494546 MSCO60682 206 aa39.12■■■■□ 3.85
CBX4-203ENST00000494546 RUFY2Q8WXA3 655 aa39.12■■■■□ 3.85
CBX4-203ENST00000494546 ZKSCAN3Q9BRR0 538 aa39.12■■■■□ 3.85
CBX4-203ENST00000494546 DIS3Q9Y2L1 958 aaKnown RBP39.12■■■■□ 3.85
CBX4-203ENST00000494546 RAD50Q92878 1312 aa39.12■■■■□ 3.85
CBX4-203ENST00000494546 CHMLP26374 656 aa39.11■■■■□ 3.85
CBX4-203ENST00000494546 HOMER2Q9NSB8 354 aa39.11■■■■□ 3.85
CBX4-203ENST00000494546 LAMA4Q16363 1823 aa39.1■■■■□ 3.85
CBX4-203ENST00000494546 EVI5O60447 810 aa39.1■■■■□ 3.85
CBX4-203ENST00000494546 SNAP25P60880 206 aa39.1■■■■□ 3.85
CBX4-203ENST00000494546 CHST13Q8NET6 341 aa39.1■■■■□ 3.85
CBX4-203ENST00000494546 TTC14Q96N46 770 aa39.1■■■■□ 3.85
CBX4-203ENST00000494546 FBXO40Q9UH90 709 aa39.1■■■■□ 3.85
CBX4-203ENST00000494546 PRR12Q9ULL5 1215 aa39.1■■■■□ 3.85
CBX4-203ENST00000494546 NR2E3Q9Y5X4 410 aa39.1■■■■□ 3.85
CBX4-203ENST00000494546 KDM4AO75164 1064 aa39.09■■■■□ 3.85
CBX4-203ENST00000494546 TINF2Q9BSI4 451 aa39.09■■■■□ 3.85
CBX4-203ENST00000494546 B4E1Z4 1266 aa39.08■■■■□ 3.85
CBX4-203ENST00000494546 CCDC174Q6PII3 467 aa39.08■■■■□ 3.85
CBX4-203ENST00000494546 ANKRD35Q8N283 1001 aa39.08■■■■□ 3.85
CBX4-203ENST00000494546 AGBL1Q96MI9 1066 aa39.08■■■■□ 3.85
CBX4-203ENST00000494546 FRMPD2Q68DX3 1309 aaPredicted RBP39.08■■■■□ 3.85
CBX4-203ENST00000494546 ANO1Q5XXA6 986 aa39.07■■■■□ 3.85
CBX4-203ENST00000494546 TTBK2Q6IQ55 1244 aa39.07■■■■□ 3.85
CBX4-203ENST00000494546 GPCPD1Q9NPB8 672 aa39.07■■■■□ 3.85
CBX4-203ENST00000494546 ZNF536O15090 1300 aa39.07■■■■□ 3.84
CBX4-203ENST00000494546 SEPT4O43236 478 aa39.06■■■■□ 3.84
CBX4-203ENST00000494546 SLC16A2P36021 539 aa39.06■■■■□ 3.84
CBX4-203ENST00000494546 IQCA1Q86XH1 822 aa39.06■■■■□ 3.84
CBX4-203ENST00000494546 NT5C2P49902 561 aa39.05■■■■□ 3.84
CBX4-203ENST00000494546 DHX30Q7L2E3 1194 aaKnown RBP eCLIP39.05■■■■□ 3.841e-13■□□□□ 9.5
CBX4-203ENST00000494546 DNAJC25-GNG10A0A024R161 153 aa39.04■■■■□ 3.84
CBX4-203ENST00000494546 PDHBP11177 359 aa39.04■■■■□ 3.84
CBX4-203ENST00000494546 ACAD9Q9H845 621 aa39.04■■■■□ 3.84
CBX4-203ENST00000494546 RNF146Q9NTX7 359 aa39.04■■■■□ 3.84
CBX4-203ENST00000494546 PFASO15067 1338 aa39.04■■■■□ 3.84
CBX4-203ENST00000494546 PLXNA1Q9UIW2 1896 aa39.04■■■■□ 3.84
CBX4-203ENST00000494546 FRMPD3Q5JV73 1810 aa39.03■■■■□ 3.84
CBX4-203ENST00000494546 ALAS1P13196 640 aa39.03■■■■□ 3.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms