RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-216ENST00000494503 TRIM43Q96BQ3 446 aaPredicted RBP11.51□□□□□ -0.57
UBR4-216ENST00000494503 HOMER2Q9NSB8 354 aa11.51□□□□□ -0.57
UBR4-216ENST00000494503 ECHDC1Q9NTX5 307 aa11.51□□□□□ -0.57
UBR4-216ENST00000494503 CLIP2Q9UDT6 1046 aa11.51□□□□□ -0.57
UBR4-216ENST00000494503 PHF24Q9UPV7 400 aa11.51□□□□□ -0.57
UBR4-216ENST00000494503 TACC3Q9Y6A5 838 aa11.51□□□□□ -0.57
UBR4-216ENST00000494503 MYO9BQ13459 2157 aa11.51□□□□□ -0.57
UBR4-216ENST00000494503 F5H6K3 240 aa11.5□□□□□ -0.57
UBR4-216ENST00000494503 NDUFB10O96000 172 aa11.5□□□□□ -0.57
UBR4-216ENST00000494503 FOSL2P15408 326 aa11.5□□□□□ -0.57
UBR4-216ENST00000494503 RASA1P20936 1047 aa11.5□□□□□ -0.57
UBR4-216ENST00000494503 FPGSQ05932 587 aa11.5□□□□□ -0.57
UBR4-216ENST00000494503 KLRC3Q07444 240 aa11.5□□□□□ -0.57
UBR4-216ENST00000494503 SNX17Q15036 470 aa11.5□□□□□ -0.57
UBR4-216ENST00000494503 ZNF792Q3KQV3 632 aa11.5□□□□□ -0.57
UBR4-216ENST00000494503 NOL8Q76FK4 1167 aaKnown RBP11.5□□□□□ -0.57
UBR4-216ENST00000494503 MAFAQ8NHW3 353 aaPredicted RBP11.5□□□□□ -0.57
UBR4-216ENST00000494503 NUP133Q8WUM0 1156 aa11.5□□□□□ -0.57
UBR4-216ENST00000494503 MYLIPQ8WY64 445 aa11.5□□□□□ -0.57
UBR4-216ENST00000494503 CDX2Q99626 313 aaPredicted RBP11.5□□□□□ -0.57
UBR4-216ENST00000494503 SPC25Q9HBM1 224 aa11.5□□□□□ -0.57
UBR4-216ENST00000494503 ZNF287Q9HBT7 754 aa11.5□□□□□ -0.57
UBR4-216ENST00000494503 RAVER2Q9HCJ3 691 aaKnown RBP11.5□□□□□ -0.57
UBR4-216ENST00000494503 NRBP1Q9UHY1 535 aa11.5□□□□□ -0.57
UBR4-216ENST00000494503 ZNF214Q9UL59 606 aaPredicted RBP11.5□□□□□ -0.57
UBR4-216ENST00000494503 FAM184BQ9ULE4 1060 aa11.5□□□□□ -0.57
UBR4-216ENST00000494503 SYNRGQ9UMZ2 1314 aa11.5□□□□□ -0.57
UBR4-216ENST00000494503 DCDC2CA8MYV0 355 aa11.49□□□□□ -0.57
UBR4-216ENST00000494503 GPAA1O43292 621 aa11.49□□□□□ -0.57
UBR4-216ENST00000494503 IGHA2P01877 340 aa11.49□□□□□ -0.57
UBR4-216ENST00000494503 C6orf222P0C671 652 aaPredicted RBP11.49□□□□□ -0.57
UBR4-216ENST00000494503 C20orf194Q5TEA3 1177 aa11.49□□□□□ -0.57
UBR4-216ENST00000494503 PRPF38AQ8NAV1 312 aaKnown RBP11.49□□□□□ -0.57
UBR4-216ENST00000494503 APPBP2Q92624 585 aa11.49□□□□□ -0.57
UBR4-216ENST00000494503 STRBPQ96SI9 672 aaKnown RBP11.49□□□□□ -0.57
UBR4-216ENST00000494503 COL25A1Q9BXS0 654 aaPredicted RBP11.49□□□□□ -0.57
UBR4-216ENST00000494503 SEMA6BQ9H3T3 888 aa11.49□□□□□ -0.57
UBR4-216ENST00000494503 ADAMTS5Q9UNA0 930 aa11.49□□□□□ -0.57
UBR4-216ENST00000494503 MTMR7Q9Y216 660 aa11.49□□□□□ -0.57
UBR4-216ENST00000494503 DIS3Q9Y2L1 958 aaKnown RBP11.49□□□□□ -0.57
UBR4-216ENST00000494503 GREB1LQ9C091 1923 aaPredicted RBP11.48□□□□□ -0.57
UBR4-216ENST00000494503 GSG1L2A8MUP6 293 aa11.48□□□□□ -0.57
UBR4-216ENST00000494503 RNF113AO15541 343 aaKnown RBP11.48□□□□□ -0.57
UBR4-216ENST00000494503 ZNF865P0CJ78 1059 aaPredicted RBP11.48□□□□□ -0.57
UBR4-216ENST00000494503 TSPY3P0CV98 308 aa11.48□□□□□ -0.57
UBR4-216ENST00000494503 TSPY8P0CW00 308 aa11.48□□□□□ -0.57
UBR4-216ENST00000494503 ITGB8P26012 769 aa11.48□□□□□ -0.57
UBR4-216ENST00000494503 ACLYP53396 1101 aa11.48□□□□□ -0.57
UBR4-216ENST00000494503 SMAD3P84022 425 aaKnown RBP11.48□□□□□ -0.57
UBR4-216ENST00000494503 KCNA10Q16322 511 aa11.48□□□□□ -0.57
UBR4-216ENST00000494503 LRRFIP1Q32MZ4 808 aaKnown RBP11.48□□□□□ -0.57
UBR4-216ENST00000494503 KBTBD3Q8NAB2 608 aa11.48□□□□□ -0.57
UBR4-216ENST00000494503 REPS2Q8NFH8 660 aa11.48□□□□□ -0.57
UBR4-216ENST00000494503 OSBP2Q969R2 916 aa11.48□□□□□ -0.57
UBR4-216ENST00000494503 CEP95Q96GE4 821 aa11.48□□□□□ -0.57
UBR4-216ENST00000494503 GLT1D1Q96MS3 346 aa11.48□□□□□ -0.57
UBR4-216ENST00000494503 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.48□□□□□ -0.57
UBR4-216ENST00000494503 NACAP1Q9BZK3 213 aa11.48□□□□□ -0.57
UBR4-216ENST00000494503 RIPK3Q9Y572 518 aa11.48□□□□□ -0.57
UBR4-216ENST00000494503 CDH23Q9H251 3354 aa11.47□□□□□ -0.57
UBR4-216ENST00000494503 EYSQ5T1H1 3165 aa11.47□□□□□ -0.57
UBR4-216ENST00000494503 SYNGAP1Q96PV0 1343 aa11.47□□□□□ -0.57
UBR4-216ENST00000494503 M0R2C6 588 aa11.47□□□□□ -0.57
UBR4-216ENST00000494503 TTLL1O95922 423 aa11.47□□□□□ -0.57
UBR4-216ENST00000494503 SLC3A2P08195 630 aaKnown RBP11.47□□□□□ -0.57
UBR4-216ENST00000494503 GNAT2P19087 354 aa11.47□□□□□ -0.57
UBR4-216ENST00000494503 SBK1Q52WX2 424 aa11.47□□□□□ -0.57
UBR4-216ENST00000494503 C1orf53Q5VUE5 145 aa11.47□□□□□ -0.57
UBR4-216ENST00000494503 CCDC129Q6ZRS4 1044 aa11.47□□□□□ -0.57
UBR4-216ENST00000494503 FSD1Q9BTV5 496 aa11.47□□□□□ -0.57
UBR4-216ENST00000494503 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.47□□□□□ -0.57
UBR4-216ENST00000494503 NYAP2Q9P242 653 aa11.47□□□□□ -0.57
UBR4-216ENST00000494503 ROBO3Q96MS0 1386 aa11.46□□□□□ -0.57
UBR4-216ENST00000494503 MYADML2A6NDP7 307 aa11.46□□□□□ -0.57
UBR4-216ENST00000494503 MOXD2PA6NHM9 499 aa11.46□□□□□ -0.57
UBR4-216ENST00000494503 ADAMTS4O75173 837 aa11.46□□□□□ -0.57
UBR4-216ENST00000494503 SNAI1O95863 264 aaPredicted RBP11.46□□□□□ -0.57
UBR4-216ENST00000494503 ZFYP08048 801 aaPredicted RBP11.46□□□□□ -0.57
UBR4-216ENST00000494503 EPHB4P54760 987 aa11.46□□□□□ -0.57
UBR4-216ENST00000494503 PDE4BQ07343 736 aa11.46□□□□□ -0.57
UBR4-216ENST00000494503 ACVR2BQ13705 512 aa11.46□□□□□ -0.57
UBR4-216ENST00000494503 CCDC144BQ3MJ40 725 aa11.46□□□□□ -0.57
UBR4-216ENST00000494503 GNASQ5JWF2 1037 aa11.46□□□□□ -0.57
UBR4-216ENST00000494503 SLFN13Q68D06 897 aa11.46□□□□□ -0.57
UBR4-216ENST00000494503 GIMAP6Q6P9H5 292 aa11.46□□□□□ -0.57
UBR4-216ENST00000494503 MSL3Q8N5Y2 521 aaKnown RBP11.46□□□□□ -0.57
UBR4-216ENST00000494503 PCSK9Q8NBP7 692 aaKnown RBP11.46□□□□□ -0.57
UBR4-216ENST00000494503 TSEN34Q9BSV6 310 aaKnown RBP11.46□□□□□ -0.57
UBR4-216ENST00000494503 PPP1R12CQ9BZL4 782 aa11.46□□□□□ -0.57
UBR4-216ENST00000494503 NAPBQ9H115 298 aa11.46□□□□□ -0.57
UBR4-216ENST00000494503 TTYH1Q9H313 450 aaPredicted RBP11.46□□□□□ -0.57
UBR4-216ENST00000494503 EPB41L4AQ9HCS5 686 aaPredicted RBP11.46□□□□□ -0.57
UBR4-216ENST00000494503 ZBTB47Q9UFB7 747 aaPredicted RBP11.46□□□□□ -0.57
UBR4-216ENST00000494503 FBXO40Q9UH90 709 aa11.46□□□□□ -0.57
UBR4-216ENST00000494503 FEM1BQ9UK73 627 aa11.46□□□□□ -0.57
UBR4-216ENST00000494503 MROH7Q68CQ1 1323 aa11.45□□□□□ -0.58
UBR4-216ENST00000494503 TMEM232C9JQI7 657 aa11.45□□□□□ -0.58
UBR4-216ENST00000494503 KIAA0355O15063 1070 aa11.45□□□□□ -0.58
UBR4-216ENST00000494503 TLR3O15455 904 aaKnown RBP11.45□□□□□ -0.58
UBR4-216ENST00000494503 DUSP11O75319 330 aaKnown RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms