RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 SEC31BQ9NQW1 1179 aa6.95□□□□□ -1.3
PTCD3-219ENST00000494323 TMEM39AQ9NV64 488 aa6.95□□□□□ -1.3
PTCD3-219ENST00000494323 GPN3Q9UHW5 284 aaPredicted RBP6.95□□□□□ -1.3
PTCD3-219ENST00000494323 KNSTRNQ9Y448 316 aa6.95□□□□□ -1.3
PTCD3-219ENST00000494323 C4AP0C0L4 1744 aa6.95□□□□□ -1.3
PTCD3-219ENST00000494323 KDM2BQ8NHM5 1336 aa6.95□□□□□ -1.3
PTCD3-219ENST00000494323 SBF1O95248 1867 aa6.94□□□□□ -1.3
PTCD3-219ENST00000494323 ANKRD26Q9UPS8 1709 aa6.94□□□□□ -1.3
PTCD3-219ENST00000494323 RNMTO43148 476 aaKnown RBP6.94□□□□□ -1.3
PTCD3-219ENST00000494323 SERPINB2P05120 415 aa6.94□□□□□ -1.3
PTCD3-219ENST00000494323 CYP19A1P11511 503 aaPredicted RBP6.94□□□□□ -1.3
PTCD3-219ENST00000494323 RLBP1P12271 317 aa6.94□□□□□ -1.3
PTCD3-219ENST00000494323 CANXP27824 592 aaKnown RBP6.94□□□□□ -1.3
PTCD3-219ENST00000494323 PRELPP51888 382 aa6.94□□□□□ -1.3
PTCD3-219ENST00000494323 FAAP100Q0VG06 881 aa6.94□□□□□ -1.3
PTCD3-219ENST00000494323 FSTL1Q12841 308 aa6.94□□□□□ -1.3
PTCD3-219ENST00000494323 CNGB1Q14028 1251 aaPredicted RBP6.94□□□□□ -1.3
PTCD3-219ENST00000494323 ZNF423Q2M1K9 1284 aa6.94□□□□□ -1.3
PTCD3-219ENST00000494323 AKAP4Q5JQC9 854 aa6.94□□□□□ -1.3
PTCD3-219ENST00000494323 HS2ST1Q7LGA3 356 aa6.94□□□□□ -1.3
PTCD3-219ENST00000494323 NECAB3Q96P71 396 aaPredicted RBP6.94□□□□□ -1.3
PTCD3-219ENST00000494323 OSGEPQ9NPF4 335 aa6.94□□□□□ -1.3
PTCD3-219ENST00000494323 NARFQ9UHQ1 456 aa6.94□□□□□ -1.3
PTCD3-219ENST00000494323 KCPQ6ZWJ8 1503 aa6.94□□□□□ -1.3
PTCD3-219ENST00000494323 BRCA1P38398 1863 aaKnown RBP6.94□□□□□ -1.3
PTCD3-219ENST00000494323 COL5A3P25940 1745 aaPredicted RBP6.93□□□□□ -1.3
PTCD3-219ENST00000494323 LINC01387J3KSC0 135 aa6.93□□□□□ -1.3
PTCD3-219ENST00000494323 SOX1O00570 391 aaPredicted RBP6.93□□□□□ -1.3
PTCD3-219ENST00000494323 DYRK3O43781 588 aa6.93□□□□□ -1.3
PTCD3-219ENST00000494323 FBXO24O75426 580 aa6.93□□□□□ -1.3
PTCD3-219ENST00000494323 MTHFSDQ2M296 383 aaKnown RBP6.93□□□□□ -1.3
PTCD3-219ENST00000494323 IGF2-ASQ6U949 168 aa6.93□□□□□ -1.3
PTCD3-219ENST00000494323 C2CD5Q86YS7 1000 aa6.93□□□□□ -1.3
PTCD3-219ENST00000494323 TTLL6Q8N841 843 aa6.93□□□□□ -1.3
PTCD3-219ENST00000494323 TGIF2Q9GZN2 237 aa6.93□□□□□ -1.3
PTCD3-219ENST00000494323 ZBTB1Q9Y2K1 713 aa6.93□□□□□ -1.3
PTCD3-219ENST00000494323 SAMM50Q9Y512 469 aa6.93□□□□□ -1.3
PTCD3-219ENST00000494323 ARFGEF1Q9Y6D6 1849 aa6.92□□□□□ -1.3
PTCD3-219ENST00000494323 GLTPD2A6NH11 291 aa6.92□□□□□ -1.3
PTCD3-219ENST00000494323 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.92□□□□□ -1.3
PTCD3-219ENST00000494323 H0YIN7 160 aa6.92□□□□□ -1.3
PTCD3-219ENST00000494323 ENC1O14682 589 aa6.92□□□□□ -1.3
PTCD3-219ENST00000494323 FSCN2O14926 492 aa6.92□□□□□ -1.3
PTCD3-219ENST00000494323 DEAF1O75398 565 aaPredicted RBP6.92□□□□□ -1.3
PTCD3-219ENST00000494323 VEGFAP15692 232 aaPredicted RBP6.92□□□□□ -1.3
PTCD3-219ENST00000494323 LMNB1P20700 586 aa6.92□□□□□ -1.3
PTCD3-219ENST00000494323 ITGB7P26010 798 aa6.92□□□□□ -1.3
PTCD3-219ENST00000494323 CDC25BP30305 580 aa6.92□□□□□ -1.3
PTCD3-219ENST00000494323 C19orf57Q0VDD7 668 aa6.92□□□□□ -1.3
PTCD3-219ENST00000494323 PWP1Q13610 501 aa6.92□□□□□ -1.3
PTCD3-219ENST00000494323 JMYQ8N9B5 988 aa6.92□□□□□ -1.3
PTCD3-219ENST00000494323 KLHL23Q8NBE8 558 aa6.92□□□□□ -1.3
PTCD3-219ENST00000494323 SMC1BQ8NDV3 1235 aa6.92□□□□□ -1.3
PTCD3-219ENST00000494323 ZNF622Q969S3 477 aaKnown RBP eCLIP6.92□□□□□ -1.39e-19■■□□□ 11.8
PTCD3-219ENST00000494323 TP53INP1Q96A56 240 aa6.92□□□□□ -1.3
PTCD3-219ENST00000494323 GGT7Q9UJ14 662 aa6.92□□□□□ -1.3
PTCD3-219ENST00000494323 SOS1Q07889 1333 aaPredicted RBP6.92□□□□□ -1.3
PTCD3-219ENST00000494323 CCDC88AQ3V6T2 1871 aa6.92□□□□□ -1.3
PTCD3-219ENST00000494323 ZNF831Q5JPB2 1677 aa6.91□□□□□ -1.3
PTCD3-219ENST00000494323 AP3B2Q13367 1082 aa6.91□□□□□ -1.3
PTCD3-219ENST00000494323 CC2D1BQ5T0F9 858 aaKnown RBP6.91□□□□□ -1.3
PTCD3-219ENST00000494323 TBC1D9BQ66K14 1250 aa6.91□□□□□ -1.3
PTCD3-219ENST00000494323 TXNDC11Q6PKC3 985 aa6.91□□□□□ -1.3
PTCD3-219ENST00000494323 ERMP1Q7Z2K6 904 aa6.91□□□□□ -1.3
PTCD3-219ENST00000494323 WFDC12Q8WWY7 111 aa6.91□□□□□ -1.3
PTCD3-219ENST00000494323 SLC7A3Q8WY07 619 aa6.91□□□□□ -1.3
PTCD3-219ENST00000494323 RSRP1Q9BUV0 290 aa6.91□□□□□ -1.3
PTCD3-219ENST00000494323 KRTAP9-2Q9BYQ4 174 aa6.91□□□□□ -1.3
PTCD3-219ENST00000494323 PCNTO95613 3336 aa6.91□□□□□ -1.3
PTCD3-219ENST00000494323 PLEKHG2Q9H7P9 1386 aa6.91□□□□□ -1.3
PTCD3-219ENST00000494323 AFDNP55196 1824 aaKnown RBP6.9□□□□□ -1.3
PTCD3-219ENST00000494323 DLL1O00548 723 aa6.9□□□□□ -1.3
PTCD3-219ENST00000494323 DIAPH1O60610 1272 aaKnown RBP6.9□□□□□ -1.3
PTCD3-219ENST00000494323 STARD3NLO95772 234 aa6.9□□□□□ -1.3
PTCD3-219ENST00000494323 CELA3AP09093 270 aa6.9□□□□□ -1.3
PTCD3-219ENST00000494323 H2AFB1P0C5Y9 115 aa6.9□□□□□ -1.3
PTCD3-219ENST00000494323 H2AFB2P0C5Z0 115 aa6.9□□□□□ -1.3
PTCD3-219ENST00000494323 NME2P22392 152 aa6.9□□□□□ -1.3
PTCD3-219ENST00000494323 IREB2P48200 963 aaKnown RBP6.9□□□□□ -1.3
PTCD3-219ENST00000494323 ZNF157P51786 506 aaPredicted RBP6.9□□□□□ -1.3
PTCD3-219ENST00000494323 EIF5P55010 431 aaKnown RBP6.9□□□□□ -1.3
PTCD3-219ENST00000494323 RACK1P63244 317 aaKnown RBP6.9□□□□□ -1.3
PTCD3-219ENST00000494323 GSTM4Q03013 218 aa6.9□□□□□ -1.3
PTCD3-219ENST00000494323 SETDB1Q15047 1291 aa6.9□□□□□ -1.3
PTCD3-219ENST00000494323 ZNF394Q53GI3 561 aa6.9□□□□□ -1.3
PTCD3-219ENST00000494323 RELL1Q8IUW5 271 aa6.9□□□□□ -1.3
PTCD3-219ENST00000494323 IL17REQ8NFR9 667 aa6.9□□□□□ -1.3
PTCD3-219ENST00000494323 ZNF496Q96IT1 587 aaPredicted RBP6.9□□□□□ -1.3
PTCD3-219ENST00000494323 ACBD3Q9H3P7 528 aa6.9□□□□□ -1.3
PTCD3-219ENST00000494323 COL15A1P39059 1388 aa6.9□□□□□ -1.31
PTCD3-219ENST00000494323 TJP1Q07157 1748 aa6.9□□□□□ -1.31
PTCD3-219ENST00000494323 WDR90Q96KV7 1748 aa6.9□□□□□ -1.31
PTCD3-219ENST00000494323 SCN11AQ9UI33 1791 aa6.9□□□□□ -1.31
PTCD3-219ENST00000494323 U2SURPO15042 1029 aaKnown RBP6.89□□□□□ -1.31
PTCD3-219ENST00000494323 KCNQ3O43525 872 aa6.89□□□□□ -1.31
PTCD3-219ENST00000494323 A1BGP04217 495 aa6.89□□□□□ -1.31
PTCD3-219ENST00000494323 CYP11A1P05108 521 aa6.89□□□□□ -1.31
PTCD3-219ENST00000494323 NOS3P29474 1203 aa6.89□□□□□ -1.31
PTCD3-219ENST00000494323 RPS26P62854 115 aaKnown RBP6.89□□□□□ -1.31
PTCD3-219ENST00000494323 ZMYM1Q5SVZ6 1142 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms