RNA–Protein interactions for RNA: ENST00000493601.5

PTPRU-208, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 5

Gene PTPRU, Length 695 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-208ENST00000493601 ZBED4O75132 1171 aa19.78■□□□□ 0.76
PTPRU-208ENST00000493601 TSPY3P0CV98 308 aa19.78■□□□□ 0.76
PTPRU-208ENST00000493601 TSPY8P0CW00 308 aa19.78■□□□□ 0.76
PTPRU-208ENST00000493601 RARBP10826 455 aa19.78■□□□□ 0.76
PTPRU-208ENST00000493601 LRRC41Q15345 812 aa19.78■□□□□ 0.76
PTPRU-208ENST00000493601 FAM47AQ5JRC9 791 aa19.78■□□□□ 0.76
PTPRU-208ENST00000493601 MSL3Q8N5Y2 521 aaKnown RBP19.78■□□□□ 0.76
PTPRU-208ENST00000493601 GMCL1P1Q8NEA9 526 aa19.78■□□□□ 0.76
PTPRU-208ENST00000493601 FEM1BQ9UK73 627 aa19.78■□□□□ 0.76
PTPRU-208ENST00000493601 CNPY2Q9Y2B0 182 aa19.78■□□□□ 0.76
PTPRU-208ENST00000493601 ATP11BQ9Y2G3 1177 aa19.78■□□□□ 0.76
PTPRU-208ENST00000493601 SMCHD1A6NHR9 2005 aa19.77■□□□□ 0.76
PTPRU-208ENST00000493601 PPARAQ07869 468 aa19.77■□□□□ 0.76
PTPRU-208ENST00000493601 SLC39A5Q6ZMH5 540 aa19.77■□□□□ 0.76
PTPRU-208ENST00000493601 LRRC47Q8N1G4 583 aaKnown RBP19.77■□□□□ 0.76
PTPRU-208ENST00000493601 NEDD1Q8NHV4 660 aa19.77■□□□□ 0.76
PTPRU-208ENST00000493601 KIFC2Q96AC6 838 aa19.77■□□□□ 0.76
PTPRU-208ENST00000493601 XPNPEP3Q9NQH7 507 aa19.77■□□□□ 0.76
PTPRU-208ENST00000493601 SALL3Q9BXA9 1300 aa19.76■□□□□ 0.75
PTPRU-208ENST00000493601 ADCYAP1R1P41586 468 aa19.76■□□□□ 0.75
PTPRU-208ENST00000493601 SNX17Q15036 470 aa19.76■□□□□ 0.75
PTPRU-208ENST00000493601 PPP4R3BQ5MIZ7 849 aa19.76■□□□□ 0.75
PTPRU-208ENST00000493601 DDX11Q96FC9 970 aa19.76■□□□□ 0.75
PTPRU-208ENST00000493601 SLC38A10Q9HBR0 1119 aa19.76■□□□□ 0.75
PTPRU-208ENST00000493601 SYNGAP1Q96PV0 1343 aa19.76■□□□□ 0.75
PTPRU-208ENST00000493601 AKR1A1P14550 325 aa19.75■□□□□ 0.75
PTPRU-208ENST00000493601 OAZ1P54368 228 aa19.75■□□□□ 0.75
PTPRU-208ENST00000493601 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.75■□□□□ 0.75
PTPRU-208ENST00000493601 RNF180Q86T96 592 aa19.75■□□□□ 0.75
PTPRU-208ENST00000493601 CPXCR1Q8N123 301 aa19.75■□□□□ 0.75
PTPRU-208ENST00000493601 FBXO40Q9UH90 709 aa19.75■□□□□ 0.75
PTPRU-208ENST00000493601 RIPK3Q9Y572 518 aa19.75■□□□□ 0.75
PTPRU-208ENST00000493601 DNAJC25-GNG10A0A024R161 153 aa19.74■□□□□ 0.75
PTPRU-208ENST00000493601 ZNF865P0CJ78 1059 aaPredicted RBP19.74■□□□□ 0.75
PTPRU-208ENST00000493601 BMP3P12645 472 aa19.74■□□□□ 0.75
PTPRU-208ENST00000493601 TAL1P17542 331 aaPredicted RBP19.74■□□□□ 0.75
PTPRU-208ENST00000493601 TFAP4Q01664 338 aa19.74■□□□□ 0.75
PTPRU-208ENST00000493601 TRIM60Q495X7 471 aa19.74■□□□□ 0.75
PTPRU-208ENST00000493601 ANKRD45Q5TZF3 282 aa19.74■□□□□ 0.75
PTPRU-208ENST00000493601 C1orf53Q5VUE5 145 aa19.74■□□□□ 0.75
PTPRU-208ENST00000493601 SLFN13Q68D06 897 aa19.74■□□□□ 0.75
PTPRU-208ENST00000493601 DEFB123Q8N688 67 aa19.74■□□□□ 0.75
PTPRU-208ENST00000493601 RAVER2Q9HCJ3 691 aaKnown RBP19.74■□□□□ 0.75
PTPRU-208ENST00000493601 ISY1Q9ULR0 285 aaKnown RBP19.74■□□□□ 0.75
PTPRU-208ENST00000493601 PHF24Q9UPV7 400 aa19.74■□□□□ 0.75
PTPRU-208ENST00000493601 FDX1P10109 184 aa19.73■□□□□ 0.75
PTPRU-208ENST00000493601 SLC4A3P48751 1232 aa19.73■□□□□ 0.75
PTPRU-208ENST00000493601 MAMDC4Q6UXC1 1216 aa19.73■□□□□ 0.75
PTPRU-208ENST00000493601 ZNF467Q7Z7K2 595 aaPredicted RBP19.73■□□□□ 0.75
PTPRU-208ENST00000493601 CHST13Q8NET6 341 aa19.73■□□□□ 0.75
PTPRU-208ENST00000493601 FERMT2Q96AC1 680 aa19.73■□□□□ 0.75
PTPRU-208ENST00000493601 EVI5LQ96CN4 794 aa19.73■□□□□ 0.75
PTPRU-208ENST00000493601 CRBNQ96SW2 442 aa19.73■□□□□ 0.75
PTPRU-208ENST00000493601 PRDM5Q9NQX1 630 aaPredicted RBP19.73■□□□□ 0.75
PTPRU-208ENST00000493601 PGK1P00558 417 aa19.72■□□□□ 0.75
PTPRU-208ENST00000493601 STAT2P52630 851 aa19.72■□□□□ 0.75
PTPRU-208ENST00000493601 HDAC1Q13547 482 aaPredicted RBP19.72■□□□□ 0.75
PTPRU-208ENST00000493601 CCDC129Q6ZRS4 1044 aa19.72■□□□□ 0.75
PTPRU-208ENST00000493601 ANKRD35Q8N283 1001 aa19.72■□□□□ 0.75
PTPRU-208ENST00000493601 GMCL1Q96IK5 515 aa19.72■□□□□ 0.75
PTPRU-208ENST00000493601 TSPY2A6NKD2 308 aa19.71■□□□□ 0.75
PTPRU-208ENST00000493601 FOXP2O15409 715 aa19.71■□□□□ 0.75
PTPRU-208ENST00000493601 IKQ13123 557 aaPredicted RBP19.71■□□□□ 0.75
PTPRU-208ENST00000493601 FAM160B2Q86V87 743 aa19.71■□□□□ 0.75
PTPRU-208ENST00000493601 CHURC1Q8WUH1 139 aa19.71■□□□□ 0.75
PTPRU-208ENST00000493601 PDLIM7Q9NR12 457 aa19.71■□□□□ 0.75
PTPRU-208ENST00000493601 FAM184BQ9ULE4 1060 aa19.71■□□□□ 0.75
PTPRU-208ENST00000493601 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.71■□□□□ 0.75
PTPRU-208ENST00000493601 MCM3APO60318 1980 aa19.71■□□□□ 0.75
PTPRU-208ENST00000493601 A0A1W2PQ45 241 aaPredicted RBP19.7■□□□□ 0.74
PTPRU-208ENST00000493601 A0A1W2PQY0 241 aa19.7■□□□□ 0.74
PTPRU-208ENST00000493601 TMEM232C9JQI7 657 aa19.7■□□□□ 0.74
PTPRU-208ENST00000493601 SNAI1O95863 264 aaPredicted RBP19.7■□□□□ 0.74
PTPRU-208ENST00000493601 SLC1A4P43007 532 aa19.7■□□□□ 0.74
PTPRU-208ENST00000493601 PDE1AP54750 535 aa19.7■□□□□ 0.74
PTPRU-208ENST00000493601 Q7L0L9 218 aa19.7■□□□□ 0.74
PTPRU-208ENST00000493601 LENG1Q96BZ8 264 aaPredicted RBP19.7■□□□□ 0.74
PTPRU-208ENST00000493601 TSEN34Q9BSV6 310 aaKnown RBP19.7■□□□□ 0.74
PTPRU-208ENST00000493601 HELLSQ9NRZ9 838 aa19.7■□□□□ 0.74
PTPRU-208ENST00000493601 HOMER2Q9NSB8 354 aa19.7■□□□□ 0.74
PTPRU-208ENST00000493601 ANAPC4Q9UJX5 808 aa19.7■□□□□ 0.74
PTPRU-208ENST00000493601 ZHX1Q9UKY1 873 aaPredicted RBP19.7■□□□□ 0.74
PTPRU-208ENST00000493601 STX8Q9UNK0 236 aa19.7■□□□□ 0.74
PTPRU-208ENST00000493601 SYNRGQ9UMZ2 1314 aa19.7■□□□□ 0.74
PTPRU-208ENST00000493601 ADAMTS4O75173 837 aa19.69■□□□□ 0.74
PTPRU-208ENST00000493601 CTDSPL2Q05D32 466 aa19.69■□□□□ 0.74
PTPRU-208ENST00000493601 TICAM2Q86XR7 235 aa19.69■□□□□ 0.74
PTPRU-208ENST00000493601 STAG1Q8WVM7 1258 aa19.69■□□□□ 0.74
PTPRU-208ENST00000493601 ACAD9Q9H845 621 aa19.69■□□□□ 0.74
PTPRU-208ENST00000493601 RANBP6O60518 1105 aaKnown RBP19.68■□□□□ 0.74
PTPRU-208ENST00000493601 PLA2G6O60733 806 aa19.68■□□□□ 0.74
PTPRU-208ENST00000493601 TLE2Q04725 743 aa19.68■□□□□ 0.74
PTPRU-208ENST00000493601 AAMPQ13685 434 aa19.68■□□□□ 0.74
PTPRU-208ENST00000493601 ABHD16BQ9H3Z7 469 aa19.68■□□□□ 0.74
PTPRU-208ENST00000493601 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.68■□□□□ 0.74
PTPRU-208ENST00000493601 MOXD2PA6NHM9 499 aa19.67■□□□□ 0.74
PTPRU-208ENST00000493601 ORC4O43929 436 aa19.67■□□□□ 0.74
PTPRU-208ENST00000493601 DUSP11O75319 330 aaKnown RBP19.67■□□□□ 0.74
PTPRU-208ENST00000493601 CLTBP09497 229 aa19.67■□□□□ 0.74
PTPRU-208ENST00000493601 MCCP23508 829 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms