RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 C7orf61Q8IZ16 206 aa6.1□□□□□ -1.43
VPS13A-212ENST00000493341 KCT2Q8NC54 265 aa6.1□□□□□ -1.43
VPS13A-212ENST00000493341 RCC1LQ96I51 464 aaKnown RBP6.1□□□□□ -1.43
VPS13A-212ENST00000493341 RTFDC1Q9BY42 306 aaPredicted RBP6.1□□□□□ -1.43
VPS13A-212ENST00000493341 NOL6Q9H6R4 1146 aaKnown RBP6.1□□□□□ -1.43
VPS13A-212ENST00000493341 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.1□□□□□ -1.43
VPS13A-212ENST00000493341 CGGBP1Q9UFW8 167 aaPredicted RBP6.1□□□□□ -1.43
VPS13A-212ENST00000493341 FBXL21Q9UKT6 434 aa6.1□□□□□ -1.43
VPS13A-212ENST00000493341 COMMD10Q9Y6G5 202 aa6.1□□□□□ -1.43
VPS13A-212ENST00000493341 TCRBV16S1A1N1A0A5B0 115 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 GABRDO14764 452 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 SHOXO15266 292 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 CRTAMO95727 393 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 APPP05067 770 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 SNRPBP14678 240 aaKnown RBP6.09□□□□□ -1.43
VPS13A-212ENST00000493341 PRSS53Q2L4Q9 553 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 SYDE2Q5VT97 1194 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 CDCA2Q69YH5 1023 aaPredicted RBP6.09□□□□□ -1.43
VPS13A-212ENST00000493341 TSHZ1Q6ZSZ6 1077 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 ARHGEF39Q8N4T4 335 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 GOLGA6L1Q8N7Z2 621 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 OR2W6PQ8NHA6 318 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 UBASH3BQ8TF42 649 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 ATXN3LQ9H3M9 355 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 MBIPQ9NS73 344 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 GMPR2Q9P2T1 348 aaKnown RBP6.09□□□□□ -1.43
VPS13A-212ENST00000493341 SYNGAP1Q96PV0 1343 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 E2F8A0AVK6 867 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 GOLGA6CA6NDK9 693 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 GOLGA6BA6NDN3 693 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 CST3P01034 146 aaPredicted RBP6.09□□□□□ -1.43
VPS13A-212ENST00000493341 NEFMP07197 916 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 SNRPB2P08579 225 aaKnown RBP6.09□□□□□ -1.43
VPS13A-212ENST00000493341 GOLGA6DP0CG33 693 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 MLC1Q15049 377 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 DUOXA2Q1HG44 320 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 GTF2IRD2BQ6EKJ0 949 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 GTF2IRD2Q86UP8 949 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 TMEM145Q8NBT3 493 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 PIDD1Q9HB75 910 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 GOLGA6AQ9NYA3 693 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 PCDHA9Q9Y5H5 950 aa6.09□□□□□ -1.43
VPS13A-212ENST00000493341 DLL1O00548 723 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 PRPF3O43395 683 aaKnown RBP6.08□□□□□ -1.44
VPS13A-212ENST00000493341 ZEB2O60315 1214 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 EPXP11678 715 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 ZSCAN20P17040 1043 aaPredicted RBP6.08□□□□□ -1.44
VPS13A-212ENST00000493341 ECI1P42126 302 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 GFRA1P56159 465 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 NTRK3Q16288 839 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 NUTM2GQ5VZR2 741 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 USP53Q70EK8 1073 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 DYMQ7RTS9 669 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 MAP4K3Q8IVH8 894 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 ISL2Q96A47 359 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 CHST12Q9NRB3 414 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 TNKSO95271 1327 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 CT47B1P0C2W7 299 aaPredicted RBP6.08□□□□□ -1.44
VPS13A-212ENST00000493341 ZNF445P59923 1031 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 PTPN21Q16825 1174 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 FAM102BQ5T8I3 360 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 IQSEC1Q6DN90 963 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 SLCO4C1Q6ZQN7 724 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 MAMDC2Q7Z304 686 aaPredicted RBP6.08□□□□□ -1.44
VPS13A-212ENST00000493341 TCEAL8Q8IYN2 117 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 NXPE1Q8N323 547 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 FOXQ1Q9C009 403 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 IP6K2Q9UHH9 426 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 GPR55Q9Y2T6 319 aaPredicted RBP6.08□□□□□ -1.44
VPS13A-212ENST00000493341 PCDHB12Q9Y5F1 795 aa6.08□□□□□ -1.44
VPS13A-212ENST00000493341 IGF1RP08069 1367 aa6.07□□□□□ -1.44
VPS13A-212ENST00000493341 B4E1Z4 1266 aa6.07□□□□□ -1.44
VPS13A-212ENST00000493341 M0R2C6 588 aa6.07□□□□□ -1.44
VPS13A-212ENST00000493341 LDHAP00338 332 aaKnown RBP6.07□□□□□ -1.44
VPS13A-212ENST00000493341 DRD2P14416 443 aa6.07□□□□□ -1.44
VPS13A-212ENST00000493341 HOXC12P31275 282 aa6.07□□□□□ -1.44
VPS13A-212ENST00000493341 IL2P60568 153 aa6.07□□□□□ -1.44
VPS13A-212ENST00000493341 MAP4K2Q12851 820 aa6.07□□□□□ -1.44
VPS13A-212ENST00000493341 ZCCHC8Q6NZY4 707 aaKnown RBP6.07□□□□□ -1.44
VPS13A-212ENST00000493341 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.07□□□□□ -1.44
VPS13A-212ENST00000493341 PPP1R13LQ8WUF5 828 aa6.07□□□□□ -1.44
VPS13A-212ENST00000493341 JPH3Q8WXH2 748 aaPredicted RBP6.07□□□□□ -1.44
VPS13A-212ENST00000493341 KREMEN1Q96MU8 473 aa6.07□□□□□ -1.44
VPS13A-212ENST00000493341 NKX2-4Q9H2Z4 354 aa6.07□□□□□ -1.44
VPS13A-212ENST00000493341 PRDM16Q9HAZ2 1276 aa6.07□□□□□ -1.44
VPS13A-212ENST00000493341 SAMD15Q9P1V8 674 aa6.07□□□□□ -1.44
VPS13A-212ENST00000493341 ASXL2Q76L83 1435 aa6.07□□□□□ -1.44
VPS13A-212ENST00000493341 VAMP4O75379 141 aa6.06□□□□□ -1.44
VPS13A-212ENST00000493341 DEAF1O75398 565 aaPredicted RBP6.06□□□□□ -1.44
VPS13A-212ENST00000493341 APBA3O96018 575 aa6.06□□□□□ -1.44
VPS13A-212ENST00000493341 CAP2P40123 477 aa6.06□□□□□ -1.44
VPS13A-212ENST00000493341 GUCY1A3Q02108 690 aa6.06□□□□□ -1.44
VPS13A-212ENST00000493341 TCIRG1Q13488 830 aa6.06□□□□□ -1.44
VPS13A-212ENST00000493341 SAFB2Q14151 953 aaKnown RBP eCLIP6.06□□□□□ -1.44
VPS13A-212ENST00000493341 HLTFQ14527 1009 aaKnown RBP eCLIP6.06□□□□□ -1.442e-7■■□□□ 13.4
VPS13A-212ENST00000493341 FIBCD1Q8N539 461 aa6.06□□□□□ -1.44
VPS13A-212ENST00000493341 CCDC140Q96MF4 163 aa6.06□□□□□ -1.44
VPS13A-212ENST00000493341 ZDHHC15Q96MV8 337 aa6.06□□□□□ -1.44
VPS13A-212ENST00000493341 TMPRSS13Q9BYE2 586 aa6.06□□□□□ -1.44
VPS13A-212ENST00000493341 CRTAC1Q9NQ79 661 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms