RNA–Protein interactions for RNA: ENST00000491330.1

PDLIM2-217, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 563 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-217ENST00000491330 MSL3Q8N5Y2 521 aaKnown RBP19.57■□□□□ 0.72
PDLIM2-217ENST00000491330 CHST13Q8NET6 341 aa19.57■□□□□ 0.72
PDLIM2-217ENST00000491330 GMCL1Q96IK5 515 aa19.57■□□□□ 0.72
PDLIM2-217ENST00000491330 ZNF214Q9UL59 606 aaPredicted RBP19.57■□□□□ 0.72
PDLIM2-217ENST00000491330 CCDC171Q6TFL3 1326 aa19.56■□□□□ 0.72
PDLIM2-217ENST00000491330 A0A1W2PPC1 479 aa19.56■□□□□ 0.72
PDLIM2-217ENST00000491330 TMEM232C9JQI7 657 aa19.56■□□□□ 0.72
PDLIM2-217ENST00000491330 DNM1LO00429 736 aa19.56■□□□□ 0.72
PDLIM2-217ENST00000491330 ORC4O43929 436 aa19.56■□□□□ 0.72
PDLIM2-217ENST00000491330 COBLO75128 1261 aa19.56■□□□□ 0.72
PDLIM2-217ENST00000491330 SDSP20132 328 aa19.56■□□□□ 0.72
PDLIM2-217ENST00000491330 NMIQ13287 307 aaPredicted RBP19.56■□□□□ 0.72
PDLIM2-217ENST00000491330 CCDC178Q5BJE1 867 aa19.56■□□□□ 0.72
PDLIM2-217ENST00000491330 RRP12Q5JTH9 1297 aaKnown RBP19.56■□□□□ 0.72
PDLIM2-217ENST00000491330 STAG1Q8WVM7 1258 aa19.56■□□□□ 0.72
PDLIM2-217ENST00000491330 PCDH10Q9P2E7 1040 aa19.56■□□□□ 0.72
PDLIM2-217ENST00000491330 PNMA2Q9UL42 364 aa19.56■□□□□ 0.72
PDLIM2-217ENST00000491330 ZNF213O14771 459 aa19.55■□□□□ 0.72
PDLIM2-217ENST00000491330 FGAP02671 866 aa19.55■□□□□ 0.72
PDLIM2-217ENST00000491330 HSPD1P10809 573 aaKnown RBP19.55■□□□□ 0.72
PDLIM2-217ENST00000491330 RARBP10826 455 aa19.55■□□□□ 0.72
PDLIM2-217ENST00000491330 CYBAP13498 195 aa19.55■□□□□ 0.72
PDLIM2-217ENST00000491330 RCSD1Q6JBY9 416 aa19.55■□□□□ 0.72
PDLIM2-217ENST00000491330 PLEKHM2Q8IWE5 1019 aa19.55■□□□□ 0.72
PDLIM2-217ENST00000491330 FAM227BQ96M60 508 aa19.55■□□□□ 0.72
PDLIM2-217ENST00000491330 TINF2Q9BSI4 451 aa19.55■□□□□ 0.72
PDLIM2-217ENST00000491330 SENP6Q9GZR1 1112 aaPredicted RBP19.55■□□□□ 0.72
PDLIM2-217ENST00000491330 SLC38A10Q9HBR0 1119 aa19.55■□□□□ 0.72
PDLIM2-217ENST00000491330 CTNNA3Q9UI47 895 aa19.55■□□□□ 0.72
PDLIM2-217ENST00000491330 ZMYM6O95789 1325 aa19.54■□□□□ 0.72
PDLIM2-217ENST00000491330 HTTP42858 3142 aa19.54■□□□□ 0.72
PDLIM2-217ENST00000491330 PGK2P07205 417 aa19.54■□□□□ 0.72
PDLIM2-217ENST00000491330 MCCP23508 829 aa19.54■□□□□ 0.72
PDLIM2-217ENST00000491330 TKFCQ3LXA3 575 aa19.54■□□□□ 0.72
PDLIM2-217ENST00000491330 ESR2Q92731 530 aa19.54■□□□□ 0.72
PDLIM2-217ENST00000491330 RAVER2Q9HCJ3 691 aaKnown RBP19.54■□□□□ 0.72
PDLIM2-217ENST00000491330 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.54■□□□□ 0.72
PDLIM2-217ENST00000491330 DOCK3Q8IZD9 2030 aa19.53■□□□□ 0.72
PDLIM2-217ENST00000491330 A0A0D9SFI3 127 aa19.53■□□□□ 0.72
PDLIM2-217ENST00000491330 IGHDP01880 384 aa19.53■□□□□ 0.72
PDLIM2-217ENST00000491330 CCDC96Q2M329 555 aa19.53■□□□□ 0.72
PDLIM2-217ENST00000491330 VPS53Q5VIR6 699 aa19.53■□□□□ 0.72
PDLIM2-217ENST00000491330 RNF180Q86T96 592 aa19.53■□□□□ 0.72
PDLIM2-217ENST00000491330 DCAF4Q8WV16 495 aa19.53■□□□□ 0.72
PDLIM2-217ENST00000491330 TTC14Q96N46 770 aa19.53■□□□□ 0.72
PDLIM2-217ENST00000491330 SPC25Q9HBM1 224 aa19.53■□□□□ 0.72
PDLIM2-217ENST00000491330 TNRC18O15417 2968 aaPredicted RBP19.53■□□□□ 0.72
PDLIM2-217ENST00000491330 PLA2G6O60733 806 aa19.52■□□□□ 0.72
PDLIM2-217ENST00000491330 TOP1P11387 765 aaKnown RBP19.52■□□□□ 0.72
PDLIM2-217ENST00000491330 AKR1A1P14550 325 aa19.52■□□□□ 0.72
PDLIM2-217ENST00000491330 ZNF792Q3KQV3 632 aa19.52■□□□□ 0.72
PDLIM2-217ENST00000491330 AKNAD1Q5T1N1 836 aa19.52■□□□□ 0.72
PDLIM2-217ENST00000491330 CWC27Q6UX04 472 aaKnown RBP19.52■□□□□ 0.72
PDLIM2-217ENST00000491330 IQCA1Q86XH1 822 aa19.52■□□□□ 0.72
PDLIM2-217ENST00000491330 REPS2Q8NFH8 660 aa19.52■□□□□ 0.72
PDLIM2-217ENST00000491330 RUFY2Q8WXA3 655 aa19.52■□□□□ 0.72
PDLIM2-217ENST00000491330 LBHD1Q9BQE6 289 aaPredicted RBP19.52■□□□□ 0.72
PDLIM2-217ENST00000491330 ACAD9Q9H845 621 aa19.52■□□□□ 0.72
PDLIM2-217ENST00000491330 FAM184BQ9ULE4 1060 aa19.52■□□□□ 0.72
PDLIM2-217ENST00000491330 COL6A1P12109 1028 aa19.51■□□□□ 0.71
PDLIM2-217ENST00000491330 ZNF467Q7Z7K2 595 aaPredicted RBP19.51■□□□□ 0.71
PDLIM2-217ENST00000491330 XPNPEP3Q9NQH7 507 aa19.51■□□□□ 0.71
PDLIM2-217ENST00000491330 TCP11L1Q9NUJ3 509 aa19.51■□□□□ 0.71
PDLIM2-217ENST00000491330 MTMR7Q9Y216 660 aa19.51■□□□□ 0.71
PDLIM2-217ENST00000491330 SYNGAP1Q96PV0 1343 aa19.51■□□□□ 0.71
PDLIM2-217ENST00000491330 POTEB2H3BUK9 544 aa19.5■□□□□ 0.71
PDLIM2-217ENST00000491330 FGRP09769 529 aa19.5■□□□□ 0.71
PDLIM2-217ENST00000491330 IMMTQ16891 758 aaKnown RBP19.5■□□□□ 0.71
PDLIM2-217ENST00000491330 GJC2Q5T442 439 aaPredicted RBP19.5■□□□□ 0.71
PDLIM2-217ENST00000491330 RBM27Q9P2N5 1060 aaKnown RBP19.5■□□□□ 0.71
PDLIM2-217ENST00000491330 ZMYND8Q9ULU4 1186 aaPredicted RBP19.5■□□□□ 0.71
PDLIM2-217ENST00000491330 HAND2P61296 217 aa19.49■□□□□ 0.71
PDLIM2-217ENST00000491330 PRAMEF19Q5SWL8 479 aa19.49■□□□□ 0.71
PDLIM2-217ENST00000491330 KCTD1Q719H9 257 aa19.49■□□□□ 0.71
PDLIM2-217ENST00000491330 MPHOSPH6Q99547 160 aaKnown RBP19.49■□□□□ 0.71
PDLIM2-217ENST00000491330 HOMER2Q9NSB8 354 aa19.49■□□□□ 0.71
PDLIM2-217ENST00000491330 PFASO15067 1338 aa19.49■□□□□ 0.71
PDLIM2-217ENST00000491330 ASB14A6NK59 587 aa19.48■□□□□ 0.71
PDLIM2-217ENST00000491330 MNX1P50219 401 aaPredicted RBP19.48■□□□□ 0.71
PDLIM2-217ENST00000491330 TRPV1Q8NER1 839 aa19.48■□□□□ 0.71
PDLIM2-217ENST00000491330 TRERF1Q96PN7 1200 aa19.48■□□□□ 0.71
PDLIM2-217ENST00000491330 ABHD16BQ9H3Z7 469 aa19.48■□□□□ 0.71
PDLIM2-217ENST00000491330 CNNM2Q9H8M5 875 aa19.48■□□□□ 0.71
PDLIM2-217ENST00000491330 IL17RBQ9NRM6 502 aa19.48■□□□□ 0.71
PDLIM2-217ENST00000491330 ZHX1Q9UKY1 873 aaPredicted RBP19.48■□□□□ 0.71
PDLIM2-217ENST00000491330 PLXNB2O15031 1838 aa19.48■□□□□ 0.71
PDLIM2-217ENST00000491330 IGHA2P01877 340 aa19.47■□□□□ 0.71
PDLIM2-217ENST00000491330 ALAS1P13196 640 aa19.47■□□□□ 0.71
PDLIM2-217ENST00000491330 BMP8BP34820 402 aa19.47■□□□□ 0.71
PDLIM2-217ENST00000491330 ATN1P54259 1190 aaPredicted RBP19.47■□□□□ 0.71
PDLIM2-217ENST00000491330 ANO1Q5XXA6 986 aa19.47■□□□□ 0.71
PDLIM2-217ENST00000491330 MAMDC4Q6UXC1 1216 aa19.47■□□□□ 0.71
PDLIM2-217ENST00000491330 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.47■□□□□ 0.71
PDLIM2-217ENST00000491330 ZNF589Q86UQ0 364 aaPredicted RBP19.47■□□□□ 0.71
PDLIM2-217ENST00000491330 NUP133Q8WUM0 1156 aa19.47■□□□□ 0.71
PDLIM2-217ENST00000491330 CHMP4CQ96CF2 233 aa19.47■□□□□ 0.71
PDLIM2-217ENST00000491330 DSCC1Q9BVC3 393 aa19.47■□□□□ 0.71
PDLIM2-217ENST00000491330 KRT23Q9C075 422 aa19.47■□□□□ 0.71
PDLIM2-217ENST00000491330 UBE2OQ9C0C9 1292 aaKnown RBP19.47■□□□□ 0.71
PDLIM2-217ENST00000491330 INCENPQ9NQS7 918 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms