RNA–Protein interactions for RNA: ENST00000490699.1

VARS2-210, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 3

Gene VARS2, Length 719 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-210ENST00000490699 USP17L24Q0WX57 530 aa12.71□□□□□ -0.37
VARS2-210ENST00000490699 MKRN3Q13064 507 aaKnown RBP12.71□□□□□ -0.37
VARS2-210ENST00000490699 NOGQ13253 232 aa12.71□□□□□ -0.37
VARS2-210ENST00000490699 COL9A3Q14050 684 aaPredicted RBP12.71□□□□□ -0.37
VARS2-210ENST00000490699 CCL15Q16663 113 aa12.71□□□□□ -0.37
VARS2-210ENST00000490699 ME3Q16798 604 aa12.71□□□□□ -0.37
VARS2-210ENST00000490699 FAM83BQ5T0W9 1011 aa12.71□□□□□ -0.37
VARS2-210ENST00000490699 KCTD1Q719H9 257 aa12.71□□□□□ -0.37
VARS2-210ENST00000490699 SIAH1Q8IUQ4 282 aa12.71□□□□□ -0.37
VARS2-210ENST00000490699 CCDC83Q8IWF9 413 aa12.71□□□□□ -0.37
VARS2-210ENST00000490699 WASF1Q92558 559 aa12.71□□□□□ -0.37
VARS2-210ENST00000490699 LLPHQ9BRT6 129 aaKnown RBP12.71□□□□□ -0.37
VARS2-210ENST00000490699 RPAP3Q9H6T3 665 aaPredicted RBP12.71□□□□□ -0.37
VARS2-210ENST00000490699 PNMA2Q9UL42 364 aa12.71□□□□□ -0.37
VARS2-210ENST00000490699 FLOT1O75955 427 aa12.7□□□□□ -0.38
VARS2-210ENST00000490699 FDX1P10109 184 aa12.7□□□□□ -0.38
VARS2-210ENST00000490699 XBP1P17861 261 aa12.7□□□□□ -0.38
VARS2-210ENST00000490699 SMARCA1P28370 1054 aa12.7□□□□□ -0.38
VARS2-210ENST00000490699 SSRP1Q08945 709 aaKnown RBP12.7□□□□□ -0.38
VARS2-210ENST00000490699 TMTC3Q6ZXV5 915 aa12.7□□□□□ -0.38
VARS2-210ENST00000490699 NECAB1Q8N987 351 aa12.7□□□□□ -0.38
VARS2-210ENST00000490699 FAM184AQ8NB25 1140 aa12.7□□□□□ -0.38
VARS2-210ENST00000490699 RRP36Q96EU6 259 aaKnown RBP12.7□□□□□ -0.38
VARS2-210ENST00000490699 SLF1Q9BQI6 1058 aa12.7□□□□□ -0.38
VARS2-210ENST00000490699 EMILIN3Q9NT22 766 aa12.7□□□□□ -0.38
VARS2-210ENST00000490699 AGTPBP1Q9UPW5 1226 aa12.7□□□□□ -0.38
VARS2-210ENST00000490699 SMC3Q9UQE7 1217 aa12.7□□□□□ -0.38
VARS2-210ENST00000490699 LOC285556D6RIA3 1793 aa12.69□□□□□ -0.38
VARS2-210ENST00000490699 PALM3A6NDB9 673 aaPredicted RBP12.69□□□□□ -0.38
VARS2-210ENST00000490699 RASSF10A6NK89 507 aa12.69□□□□□ -0.38
VARS2-210ENST00000490699 PLA2G6O60733 806 aa12.69□□□□□ -0.38
VARS2-210ENST00000490699 CD2BP2O95400 341 aaKnown RBP12.69□□□□□ -0.38
VARS2-210ENST00000490699 GOLGA8HP0CJ92 632 aa12.69□□□□□ -0.38
VARS2-210ENST00000490699 SCRN1Q12765 414 aa12.69□□□□□ -0.38
VARS2-210ENST00000490699 SYDE2Q5VT97 1194 aa12.69□□□□□ -0.38
VARS2-210ENST00000490699 PRPF38AQ8NAV1 312 aaKnown RBP12.69□□□□□ -0.38
VARS2-210ENST00000490699 GTF3C2Q8WUA4 911 aaPredicted RBP12.69□□□□□ -0.38
VARS2-210ENST00000490699 KIFC2Q96AC6 838 aa12.69□□□□□ -0.38
VARS2-210ENST00000490699 NUP88Q99567 741 aaPredicted RBP12.69□□□□□ -0.38
VARS2-210ENST00000490699 SPZ1Q9BXG8 430 aa12.69□□□□□ -0.38
VARS2-210ENST00000490699 NCOA5Q9HCD5 579 aaKnown RBP12.69□□□□□ -0.38
VARS2-210ENST00000490699 HOXC10Q9NYD6 342 aa12.69□□□□□ -0.38
VARS2-210ENST00000490699 MAD2L2Q9UI95 211 aa12.69□□□□□ -0.38
VARS2-210ENST00000490699 HPS5Q9UPZ3 1129 aa12.69□□□□□ -0.38
VARS2-210ENST00000490699 PTPRFP10586 1907 aa12.68□□□□□ -0.38
VARS2-210ENST00000490699 MYPNQ86TC9 1320 aa12.68□□□□□ -0.38
VARS2-210ENST00000490699 ZBED4O75132 1171 aa12.68□□□□□ -0.38
VARS2-210ENST00000490699 IFNAR1P17181 557 aa12.68□□□□□ -0.38
VARS2-210ENST00000490699 ADD1P35611 737 aaKnown RBP12.68□□□□□ -0.38
VARS2-210ENST00000490699 TRIM29Q14134 588 aa12.68□□□□□ -0.38
VARS2-210ENST00000490699 COG2Q14746 738 aa12.68□□□□□ -0.38
VARS2-210ENST00000490699 ANKRD23Q86SG2 305 aa12.68□□□□□ -0.38
VARS2-210ENST00000490699 CCDC82Q8N4S0 544 aa12.68□□□□□ -0.38
VARS2-210ENST00000490699 SMCR8Q8TEV9 937 aaPredicted RBP12.68□□□□□ -0.38
VARS2-210ENST00000490699 INTS4Q96HW7 963 aaKnown RBP12.68□□□□□ -0.38
VARS2-210ENST00000490699 CAPNS2Q96L46 248 aa12.68□□□□□ -0.38
VARS2-210ENST00000490699 PARK7Q99497 189 aaKnown RBP12.68□□□□□ -0.38
VARS2-210ENST00000490699 SLC26A6Q9BXS9 759 aa12.68□□□□□ -0.38
VARS2-210ENST00000490699 RNF26Q9BY78 433 aaPredicted RBP12.68□□□□□ -0.38
VARS2-210ENST00000490699 ZCCHC17Q9NP64 241 aaKnown RBP12.68□□□□□ -0.38
VARS2-210ENST00000490699 SLC45A1Q9Y2W3 748 aa12.68□□□□□ -0.38
VARS2-210ENST00000490699 PTPDC1A2A3K4 754 aa12.67□□□□□ -0.38
VARS2-210ENST00000490699 PLEKHA8P1O95397 391 aa12.67□□□□□ -0.38
VARS2-210ENST00000490699 DEXIO95424 95 aa12.67□□□□□ -0.38
VARS2-210ENST00000490699 LARGE1O95461 756 aa12.67□□□□□ -0.38
VARS2-210ENST00000490699 ALDH1A1P00352 501 aa12.67□□□□□ -0.38
VARS2-210ENST00000490699 PDCP20941 246 aa12.67□□□□□ -0.38
VARS2-210ENST00000490699 CDC27P30260 824 aa12.67□□□□□ -0.38
VARS2-210ENST00000490699 HOXA7P31268 230 aaPredicted RBP12.67□□□□□ -0.38
VARS2-210ENST00000490699 GJA5P36382 358 aa12.67□□□□□ -0.38
VARS2-210ENST00000490699 CYP4F22Q6NT55 531 aa12.67□□□□□ -0.38
VARS2-210ENST00000490699 CATSPERGQ6ZRH7 1159 aa12.67□□□□□ -0.38
VARS2-210ENST00000490699 HOMER1Q86YM7 354 aa12.67□□□□□ -0.38
VARS2-210ENST00000490699 STAG2Q8N3U4 1231 aa12.67□□□□□ -0.38
VARS2-210ENST00000490699 MB21D1Q8N884 522 aa12.67□□□□□ -0.38
VARS2-210ENST00000490699 CCDC12Q8WUD4 166 aaPredicted RBP12.67□□□□□ -0.38
VARS2-210ENST00000490699 VAT1LQ9HCJ6 419 aa12.67□□□□□ -0.38
VARS2-210ENST00000490699 STK36Q9NRP7 1315 aa12.66□□□□□ -0.38
VARS2-210ENST00000490699 hCG_1984214I3L0E3 225 aa12.66□□□□□ -0.38
VARS2-210ENST00000490699 PDHXO00330 501 aa12.66□□□□□ -0.38
VARS2-210ENST00000490699 FMNL1O95466 1100 aaPredicted RBP12.66□□□□□ -0.38
VARS2-210ENST00000490699 PDIA4P13667 645 aaKnown RBP12.66□□□□□ -0.38
VARS2-210ENST00000490699 SLC16A2P36021 539 aa12.66□□□□□ -0.38
VARS2-210ENST00000490699 C1QTNF8P60827 252 aa12.66□□□□□ -0.38
VARS2-210ENST00000490699 CUL4AQ13619 759 aa12.66□□□□□ -0.38
VARS2-210ENST00000490699 BTNL9Q6UXG8 535 aa12.66□□□□□ -0.38
VARS2-210ENST00000490699 ADGRF4Q8IZF3 695 aa12.66□□□□□ -0.38
VARS2-210ENST00000490699 ZNF713Q8N859 430 aaPredicted RBP12.66□□□□□ -0.38
VARS2-210ENST00000490699 UBA5Q9GZZ9 404 aa12.66□□□□□ -0.38
VARS2-210ENST00000490699 ORC3Q9UBD5 711 aaPredicted RBP12.66□□□□□ -0.38
VARS2-210ENST00000490699 PPP1R9AQ9ULJ8 1098 aa12.66□□□□□ -0.38
VARS2-210ENST00000490699 PRR12Q9ULL5 1215 aa12.66□□□□□ -0.38
VARS2-210ENST00000490699 CNTNAP5Q8WYK1 1306 aa12.65□□□□□ -0.38
VARS2-210ENST00000490699 PNMA6FA0A0J9YX94 578 aa12.65□□□□□ -0.38
VARS2-210ENST00000490699 ZBTB5O15062 677 aa12.65□□□□□ -0.38
VARS2-210ENST00000490699 PRPF3O43395 683 aaKnown RBP12.65□□□□□ -0.38
VARS2-210ENST00000490699 GALR2O43603 387 aaPredicted RBP12.65□□□□□ -0.38
VARS2-210ENST00000490699 HSPA6P17066 643 aa12.65□□□□□ -0.38
VARS2-210ENST00000490699 GCLCP48506 637 aaPredicted RBP12.65□□□□□ -0.38
VARS2-210ENST00000490699 DGKZQ13574 1117 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms