RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 SGMS1Q86VZ5 419 aa12.7□□□□□ -0.38
VPS13D-210ENST00000489961 CCAR1Q8IX12 1150 aaKnown RBP12.7□□□□□ -0.38
VPS13D-210ENST00000489961 ZNF654Q8IZM8 581 aa12.7□□□□□ -0.38
VPS13D-210ENST00000489961 CD99L2Q8TCZ2 262 aa12.7□□□□□ -0.38
VPS13D-210ENST00000489961 TXNRD2Q9NNW7 524 aa12.7□□□□□ -0.38
VPS13D-210ENST00000489961 ADAMTS5Q9UNA0 930 aa12.7□□□□□ -0.38
VPS13D-210ENST00000489961 SLC12A7Q9Y666 1083 aa12.7□□□□□ -0.38
VPS13D-210ENST00000489961 GOLGA8HP0CJ92 632 aa12.69□□□□□ -0.38
VPS13D-210ENST00000489961 FCGRTP55899 365 aa12.69□□□□□ -0.38
VPS13D-210ENST00000489961 TROAPQ12815 778 aa12.69□□□□□ -0.38
VPS13D-210ENST00000489961 PLS1Q14651 629 aa12.69□□□□□ -0.38
VPS13D-210ENST00000489961 GRM4Q14833 912 aa12.69□□□□□ -0.38
VPS13D-210ENST00000489961 SYDE2Q5VT97 1194 aa12.69□□□□□ -0.38
VPS13D-210ENST00000489961 TTBK2Q6IQ55 1244 aa12.69□□□□□ -0.38
VPS13D-210ENST00000489961 BTNL9Q6UXG8 535 aa12.69□□□□□ -0.38
VPS13D-210ENST00000489961 Q6ZUG5 572 aa12.69□□□□□ -0.38
VPS13D-210ENST00000489961 CTCFLQ8NI51 663 aaPredicted RBP12.69□□□□□ -0.38
VPS13D-210ENST00000489961 NUP133Q8WUM0 1156 aa12.69□□□□□ -0.38
VPS13D-210ENST00000489961 IL17RAQ96F46 866 aa12.69□□□□□ -0.38
VPS13D-210ENST00000489961 MAP3K14Q99558 947 aa12.69□□□□□ -0.38
VPS13D-210ENST00000489961 C22orf23Q9BZE7 217 aa12.69□□□□□ -0.38
VPS13D-210ENST00000489961 UPF3BQ9BZI7 483 aaKnown RBP12.69□□□□□ -0.38
VPS13D-210ENST00000489961 BTBD7Q9P203 1132 aa12.69□□□□□ -0.38
VPS13D-210ENST00000489961 PRR12Q9ULL5 1215 aa12.69□□□□□ -0.38
VPS13D-210ENST00000489961 CNMDO75829 334 aa12.68□□□□□ -0.38
VPS13D-210ENST00000489961 FMNL1O95466 1100 aaPredicted RBP12.68□□□□□ -0.38
VPS13D-210ENST00000489961 KIF5BP33176 963 aa12.68□□□□□ -0.38
VPS13D-210ENST00000489961 SLC16A2P36021 539 aa12.68□□□□□ -0.38
VPS13D-210ENST00000489961 PSMC4P43686 418 aa12.68□□□□□ -0.38
VPS13D-210ENST00000489961 POTEEQ6S8J3 1075 aa12.68□□□□□ -0.38
VPS13D-210ENST00000489961 FBXL16Q8N461 479 aa12.68□□□□□ -0.38
VPS13D-210ENST00000489961 BRF1Q92994 677 aa12.68□□□□□ -0.38
VPS13D-210ENST00000489961 BACH2Q9BYV9 841 aa12.68□□□□□ -0.38
VPS13D-210ENST00000489961 SPATC1LQ9H0A9 340 aa12.68□□□□□ -0.38
VPS13D-210ENST00000489961 SLC38A10Q9HBR0 1119 aa12.68□□□□□ -0.38
VPS13D-210ENST00000489961 CWC22Q9HCG8 908 aaKnown RBP12.68□□□□□ -0.38
VPS13D-210ENST00000489961 PDRG1Q9NUG6 133 aa12.68□□□□□ -0.38
VPS13D-210ENST00000489961 KLF18A0A0U1RQI7 1052 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 PALM3A6NDB9 673 aaPredicted RBP12.67□□□□□ -0.38
VPS13D-210ENST00000489961 KLRF2D3W0D1 207 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 ZBTB43O43298 467 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 DHX16O60231 1041 aaKnown RBP12.67□□□□□ -0.38
VPS13D-210ENST00000489961 PEX10O60683 326 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 ECM2O94769 699 aaPredicted RBP12.67□□□□□ -0.38
VPS13D-210ENST00000489961 GNRH1P01148 92 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 MAPK4P31152 587 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 COPB2P35606 906 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 STAT3P40763 770 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 RBM25P49756 843 aaKnown RBP12.67□□□□□ -0.38
VPS13D-210ENST00000489961 GNAQP50148 359 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 OAZ1P54368 228 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 TMEM132BQ14DG7 1078 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 Q3C1V9 767 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 APOA5Q6Q788 366 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 STAG2Q8N3U4 1231 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 REPS2Q8NFH8 660 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 MYL10Q9BUA6 226 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 MOV10L1Q9BXT6 1211 aaKnown RBP12.67□□□□□ -0.38
VPS13D-210ENST00000489961 TEX13BQ9BXU2 312 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 AGXT2Q9BYV1 514 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 UBA5Q9GZZ9 404 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 EFCC1Q9HA90 598 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 MAD2L2Q9UI95 211 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 ZNF214Q9UL59 606 aaPredicted RBP12.67□□□□□ -0.38
VPS13D-210ENST00000489961 NAP1L2Q9ULW6 460 aaPredicted RBP12.67□□□□□ -0.38
VPS13D-210ENST00000489961 ZSWIM8A7E2V4 1837 aa12.67□□□□□ -0.38
VPS13D-210ENST00000489961 TNPO2O14787 897 aaKnown RBP12.66□□□□□ -0.38
VPS13D-210ENST00000489961 ATP2A1O14983 1001 aa12.66□□□□□ -0.38
VPS13D-210ENST00000489961 SLC25A27O95847 323 aa12.66□□□□□ -0.38
VPS13D-210ENST00000489961 HOXD10P28358 340 aa12.66□□□□□ -0.38
VPS13D-210ENST00000489961 RCAN1P53805 252 aa12.66□□□□□ -0.38
VPS13D-210ENST00000489961 APOBRQ0VD83 1088 aa12.66□□□□□ -0.38
VPS13D-210ENST00000489961 WDR78Q5VTH9 848 aa12.66□□□□□ -0.38
VPS13D-210ENST00000489961 CTU1Q7Z7A3 348 aaKnown RBP12.66□□□□□ -0.38
VPS13D-210ENST00000489961 MICU3Q86XE3 530 aa12.66□□□□□ -0.38
VPS13D-210ENST00000489961 CPXCR1Q8N123 301 aa12.66□□□□□ -0.38
VPS13D-210ENST00000489961 FANCBQ8NB91 859 aa12.66□□□□□ -0.38
VPS13D-210ENST00000489961 SHCBP1Q8NEM2 672 aa12.66□□□□□ -0.38
VPS13D-210ENST00000489961 COA7Q96BR5 231 aa12.66□□□□□ -0.38
VPS13D-210ENST00000489961 LZTS2Q9BRK4 669 aa12.66□□□□□ -0.38
VPS13D-210ENST00000489961 ARHGAP39Q9C0H5 1083 aa12.66□□□□□ -0.38
VPS13D-210ENST00000489961 RANBP17Q9H2T7 1088 aaKnown RBP12.66□□□□□ -0.38
VPS13D-210ENST00000489961 MROH8Q9H579 483 aa12.66□□□□□ -0.38
VPS13D-210ENST00000489961 RAVER2Q9HCJ3 691 aaKnown RBP12.66□□□□□ -0.38
VPS13D-210ENST00000489961 PNMA2Q9UL42 364 aa12.66□□□□□ -0.38
VPS13D-210ENST00000489961 BRPF3Q9ULD4 1205 aa12.66□□□□□ -0.38
VPS13D-210ENST00000489961 TRIM17Q9Y577 477 aa12.66□□□□□ -0.38
VPS13D-210ENST00000489961 MYH6P13533 1939 aa12.66□□□□□ -0.38
VPS13D-210ENST00000489961 PCNTO95613 3336 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 GOLGA8AA7E2F4 631 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 GOLGA8BA8MQT2 603 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 RXRAP19793 462 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 SLC4A3P48751 1232 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 PRMT2P55345 433 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 SNAP25P60880 206 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 TOB2Q14106 344 aaPredicted RBP12.65□□□□□ -0.38
VPS13D-210ENST00000489961 PPP2R5BQ15173 497 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 ANKRD1Q15327 319 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 SNRNP48Q6IEG0 339 aaKnown RBP12.65□□□□□ -0.38
VPS13D-210ENST00000489961 CCDC174Q6PII3 467 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms