RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 UBE2HP62256 183 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 HTRA3P83110 453 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 KLRC3Q07444 240 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 GSE1Q14687 1217 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 KIAA1755Q5JYT7 1200 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 SPRYD7Q5W111 196 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 PAXIP1Q6ZW49 1069 aaPredicted RBP18.35■□□□□ 0.53
SYNE1-227ENST00000489156 RASGRP2Q7LDG7 609 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 RASAL3Q86YV0 1011 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 SPICE1Q8N0Z3 855 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 CCDC82Q8N4S0 544 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 ZNF396Q96N95 335 aaPredicted RBP18.35■□□□□ 0.53
SYNE1-227ENST00000489156 AIFM3Q96NN9 605 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 LZTS2Q9BRK4 669 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 SH2D4AQ9H788 454 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 PLEKHA8P1O95397 391 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 OTUD7BQ6GQQ9 843 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 FAM173BQ6P4H8 233 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 CMTR1Q8N1G2 835 aaKnown RBP18.35■□□□□ 0.53
SYNE1-227ENST00000489156 HHIPL1Q96JK4 782 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 VCPKMTQ9H867 229 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 EMILIN3Q9NT22 766 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 KCNH4Q9UQ05 1017 aa18.35■□□□□ 0.53
SYNE1-227ENST00000489156 C19orf81C9J6K1 198 aa18.34■□□□□ 0.53
SYNE1-227ENST00000489156 CXCL11O14625 94 aa18.34■□□□□ 0.53
SYNE1-227ENST00000489156 KIF23Q02241 960 aaPredicted RBP18.34■□□□□ 0.53
SYNE1-227ENST00000489156 GRM1Q13255 1194 aa18.34■□□□□ 0.53
SYNE1-227ENST00000489156 SRBD1Q8N5C6 995 aaKnown RBP18.34■□□□□ 0.53
SYNE1-227ENST00000489156 GPT2Q8TD30 523 aa18.34■□□□□ 0.53
SYNE1-227ENST00000489156 GOPCQ9HD26 462 aa18.34■□□□□ 0.53
SYNE1-227ENST00000489156 V9GY48 417 aaPredicted RBP18.34■□□□□ 0.53
SYNE1-227ENST00000489156 NDUFB10O96000 172 aa18.33■□□□□ 0.53
SYNE1-227ENST00000489156 ZBTB48P10074 688 aaPredicted RBP18.33■□□□□ 0.53
SYNE1-227ENST00000489156 U2AF2P26368 475 aaKnown RBP eCLIP18.33■□□□□ 0.53
SYNE1-227ENST00000489156 SMARCA1P28370 1054 aa18.33■□□□□ 0.53
SYNE1-227ENST00000489156 USP14P54578 494 aa18.33■□□□□ 0.53
SYNE1-227ENST00000489156 C1QTNF8P60827 252 aa18.33■□□□□ 0.53
SYNE1-227ENST00000489156 DEFB115Q30KQ5 88 aa18.33■□□□□ 0.53
SYNE1-227ENST00000489156 SLFN13Q68D06 897 aa18.33■□□□□ 0.53
SYNE1-227ENST00000489156 CYP4F22Q6NT55 531 aa18.33■□□□□ 0.53
SYNE1-227ENST00000489156 GMCL1P1Q8NEA9 526 aa18.33■□□□□ 0.53
SYNE1-227ENST00000489156 MAD2L2Q9UI95 211 aa18.33■□□□□ 0.53
SYNE1-227ENST00000489156 SYNPO2Q9UMS6 1093 aa18.33■□□□□ 0.53
SYNE1-227ENST00000489156 MYH6P13533 1939 aa18.33■□□□□ 0.53
SYNE1-227ENST00000489156 BAZ2BQ9UIF8 2168 aaKnown RBP18.33■□□□□ 0.52
SYNE1-227ENST00000489156 CNTNAP5Q8WYK1 1306 aa18.33■□□□□ 0.52
SYNE1-227ENST00000489156 PALM3A6NDB9 673 aaPredicted RBP18.33■□□□□ 0.52
SYNE1-227ENST00000489156 SLC10A3P09131 477 aa18.33■□□□□ 0.52
SYNE1-227ENST00000489156 SAFBQ15424 915 aaKnown RBP eCLIP18.33■□□□□ 0.52
SYNE1-227ENST00000489156 PKN1Q16512 942 aa18.33■□□□□ 0.52
SYNE1-227ENST00000489156 USP17L2Q6R6M4 530 aa18.33■□□□□ 0.52
SYNE1-227ENST00000489156 SPATA32Q96LK8 384 aa18.33■□□□□ 0.52
SYNE1-227ENST00000489156 GJB4Q9NTQ9 266 aa18.33■□□□□ 0.52
SYNE1-227ENST00000489156 MYH15Q9Y2K3 1946 aa18.32■□□□□ 0.52
SYNE1-227ENST00000489156 A0A0G2JLL6 359 aaPredicted RBP18.32■□□□□ 0.52
SYNE1-227ENST00000489156 RASSF10A6NK89 507 aa18.32■□□□□ 0.52
SYNE1-227ENST00000489156 FAM155AB1AL88 458 aaPredicted RBP18.32■□□□□ 0.52
SYNE1-227ENST00000489156 MMP1P03956 469 aa18.32■□□□□ 0.52
SYNE1-227ENST00000489156 PDHBP11177 359 aa18.32■□□□□ 0.52
SYNE1-227ENST00000489156 SNAPC2Q13487 334 aa18.32■□□□□ 0.52
SYNE1-227ENST00000489156 SH3D19Q5HYK7 790 aa18.32■□□□□ 0.52
SYNE1-227ENST00000489156 PRRT2Q7Z6L0 340 aaPredicted RBP18.32■□□□□ 0.52
SYNE1-227ENST00000489156 LEO1Q8WVC0 666 aaPredicted RBP18.32■□□□□ 0.52
SYNE1-227ENST00000489156 CCDC102AQ96A19 550 aa18.32■□□□□ 0.52
SYNE1-227ENST00000489156 MS4A4AQ96JQ5 239 aa18.32■□□□□ 0.52
SYNE1-227ENST00000489156 NUP88Q99567 741 aaPredicted RBP18.32■□□□□ 0.52
SYNE1-227ENST00000489156 TFIP11Q9UBB9 837 aaKnown RBP18.32■□□□□ 0.52
SYNE1-227ENST00000489156 GADL1Q6ZQY3 521 aa18.31■□□□□ 0.52
SYNE1-227ENST00000489156 FOXP1Q9H334 677 aaPredicted RBP18.31■□□□□ 0.52
SYNE1-227ENST00000489156 TMOD4Q9NZQ9 345 aa18.31■□□□□ 0.52
SYNE1-227ENST00000489156 RCOR1Q9UKL0 485 aa18.31■□□□□ 0.52
SYNE1-227ENST00000489156 PARP1P09874 1014 aaKnown RBP18.31■□□□□ 0.52
SYNE1-227ENST00000489156 SLC1A4P43007 532 aa18.31■□□□□ 0.52
SYNE1-227ENST00000489156 GTF2A2P52657 109 aa18.31■□□□□ 0.52
SYNE1-227ENST00000489156 FAM177A1Q8N128 213 aaPredicted RBP18.31■□□□□ 0.52
SYNE1-227ENST00000489156 LPAR1Q92633 364 aa18.31■□□□□ 0.52
SYNE1-227ENST00000489156 ISY1Q9ULR0 285 aaKnown RBP18.31■□□□□ 0.52
SYNE1-227ENST00000489156 LOC285556D6RIA3 1793 aa18.3■□□□□ 0.52
SYNE1-227ENST00000489156 GADD45BO75293 160 aaPredicted RBP18.3■□□□□ 0.52
SYNE1-227ENST00000489156 GOLGA8HP0CJ92 632 aa18.3■□□□□ 0.52
SYNE1-227ENST00000489156 SNHG28P0DPA3 235 aa18.3■□□□□ 0.52
SYNE1-227ENST00000489156 VCAM1P19320 739 aa18.3■□□□□ 0.52
SYNE1-227ENST00000489156 MOGSQ13724 837 aa18.3■□□□□ 0.52
SYNE1-227ENST00000489156 GNL2Q13823 731 aaKnown RBP18.3■□□□□ 0.52
SYNE1-227ENST00000489156 PFKFB3Q16875 520 aaPredicted RBP18.3■□□□□ 0.52
SYNE1-227ENST00000489156 FAM83BQ5T0W9 1011 aa18.3■□□□□ 0.52
SYNE1-227ENST00000489156 MYSM1Q5VVJ2 828 aa18.3■□□□□ 0.52
SYNE1-227ENST00000489156 KCTD1Q719H9 257 aa18.3■□□□□ 0.52
SYNE1-227ENST00000489156 STAG2Q8N3U4 1231 aa18.3■□□□□ 0.52
SYNE1-227ENST00000489156 C12orf42Q96LP6 360 aa18.3■□□□□ 0.52
SYNE1-227ENST00000489156 SPZ1Q9BXG8 430 aa18.3■□□□□ 0.52
SYNE1-227ENST00000489156 GZF1Q9H116 711 aaPredicted RBP18.3■□□□□ 0.52
SYNE1-227ENST00000489156 POLR3EQ9NVU0 708 aa18.3■□□□□ 0.52
SYNE1-227ENST00000489156 RTEL1Q9NZ71 1219 aa18.3■□□□□ 0.52
SYNE1-227ENST00000489156 FRMPD2Q68DX3 1309 aaPredicted RBP18.3■□□□□ 0.52
SYNE1-227ENST00000489156 CCL15-CCL14A0A0B4J2E2 113 aa18.29■□□□□ 0.52
SYNE1-227ENST00000489156 SCG2P13521 617 aa18.29■□□□□ 0.52
SYNE1-227ENST00000489156 CCL15Q16663 113 aa18.29■□□□□ 0.52
SYNE1-227ENST00000489156 CCDC96Q2M329 555 aa18.29■□□□□ 0.52
SYNE1-227ENST00000489156 TREML2Q5T2D2 321 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms