RNA–Protein interactions for RNA: ENST00000488571.1

SNU13-208, Transcript of small nuclear ribonucleoprotein 13, human

TSL 5

Gene SNU13, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNU13-208	ENST00000488571	SNPH	O15079	494 aa		13.69	□□□□□ -0.22
SNU13-208	ENST00000488571	PGK2	P07205	417 aa		13.69	□□□□□ -0.22
SNU13-208	ENST00000488571	IFIT2	P09913	472 aa	Known RBP	13.69	□□□□□ -0.22
SNU13-208	ENST00000488571	EEF2	P13639	858 aa	Known RBP	13.69	□□□□□ -0.22
SNU13-208	ENST00000488571	ITGB8	P26012	769 aa		13.69	□□□□□ -0.22
SNU13-208	ENST00000488571	C16orf86	Q6ZW13	317 aa		13.69	□□□□□ -0.22
SNU13-208	ENST00000488571	RIOX2	Q8IUF8	465 aa		13.69	□□□□□ -0.22
SNU13-208	ENST00000488571	EFCAB3	Q8N7B9	438 aa		13.69	□□□□□ -0.22
SNU13-208	ENST00000488571	ZFP91	Q96JP5	570 aa	Predicted RBP	13.69	□□□□□ -0.22
SNU13-208	ENST00000488571	CCDC17	Q96LX7	622 aa		13.69	□□□□□ -0.22
SNU13-208	ENST00000488571	CDX2	Q99626	313 aa	Predicted RBP	13.69	□□□□□ -0.22
SNU13-208	ENST00000488571	NRBP1	Q9UHY1	535 aa		13.69	□□□□□ -0.22
SNU13-208	ENST00000488571	PHF24	Q9UPV7	400 aa		13.69	□□□□□ -0.22
SNU13-208	ENST00000488571	ROBO3	Q96MS0	1386 aa		13.69	□□□□□ -0.22
SNU13-208	ENST00000488571	USP17L12	C9JPN9	530 aa		13.68	□□□□□ -0.22
SNU13-208	ENST00000488571	USP17L21	D6R901	530 aa		13.68	□□□□□ -0.22
SNU13-208	ENST00000488571	SLC25A27	O95847	323 aa		13.68	□□□□□ -0.22
SNU13-208	ENST00000488571	TAL1	P17542	331 aa	Predicted RBP	13.68	□□□□□ -0.22
SNU13-208	ENST00000488571	TLE2	Q04725	743 aa		13.68	□□□□□ -0.22
SNU13-208	ENST00000488571	ZNF792	Q3KQV3	632 aa		13.68	□□□□□ -0.22
SNU13-208	ENST00000488571	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.68	□□□□□ -0.22
SNU13-208	ENST00000488571	REPS2	Q8NFH8	660 aa		13.68	□□□□□ -0.22
SNU13-208	ENST00000488571	TINF2	Q9BSI4	451 aa		13.68	□□□□□ -0.22
SNU13-208	ENST00000488571	TTYH1	Q9H313	450 aa	Predicted RBP	13.68	□□□□□ -0.22
SNU13-208	ENST00000488571	BOLA2	Q9H3K6	86 aa		13.68	□□□□□ -0.22
SNU13-208	ENST00000488571	SEMA6B	Q9H3T3	888 aa		13.68	□□□□□ -0.22
SNU13-208	ENST00000488571	XPNPEP3	Q9NQH7	507 aa		13.68	□□□□□ -0.22
SNU13-208	ENST00000488571	ZNF214	Q9UL59	606 aa	Predicted RBP	13.68	□□□□□ -0.22
SNU13-208	ENST00000488571	ZBED9	Q6R2W3	1325 aa		13.67	□□□□□ -0.22
SNU13-208	ENST00000488571	VWA5A	O00534	786 aa		13.67	□□□□□ -0.22
SNU13-208	ENST00000488571	PGK1	P00558	417 aa		13.67	□□□□□ -0.22
SNU13-208	ENST00000488571	ZNF865	P0CJ78	1059 aa	Predicted RBP	13.67	□□□□□ -0.22
SNU13-208	ENST00000488571	ATP5J	P18859	108 aa		13.67	□□□□□ -0.22
SNU13-208	ENST00000488571	EPHB4	P54760	987 aa		13.67	□□□□□ -0.22
SNU13-208	ENST00000488571	SMAD3	P84022	425 aa	Known RBP	13.67	□□□□□ -0.22
SNU13-208	ENST00000488571	MMP19	Q99542	508 aa		13.67	□□□□□ -0.22
SNU13-208	ENST00000488571	HAUS7	Q99871	368 aa		13.67	□□□□□ -0.22
SNU13-208	ENST00000488571	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
SNU13-208	ENST00000488571	BCL11A	Q9H165	835 aa		13.67	□□□□□ -0.22
SNU13-208	ENST00000488571	ZBTB40	Q9NUA8	1239 aa		13.67	□□□□□ -0.22
SNU13-208	ENST00000488571	PRUNE2	Q8WUY3	3088 aa		13.67	□□□□□ -0.22
SNU13-208	ENST00000488571	SPTBN5	Q9NRC6	3674 aa	Known RBP	13.67	□□□□□ -0.22
SNU13-208	ENST00000488571	RAB11FIP3	O75154	756 aa		13.66	□□□□□ -0.22
SNU13-208	ENST00000488571	RARB	P10826	455 aa		13.66	□□□□□ -0.22
SNU13-208	ENST00000488571	STAT3	P40763	770 aa		13.66	□□□□□ -0.22
SNU13-208	ENST00000488571	UBE3C	Q15386	1083 aa		13.66	□□□□□ -0.22
SNU13-208	ENST00000488571	FAM83B	Q5T0W9	1011 aa		13.66	□□□□□ -0.22
SNU13-208	ENST00000488571	CTR9	Q6PD62	1173 aa		13.66	□□□□□ -0.22
SNU13-208	ENST00000488571	MAFA	Q8NHW3	353 aa	Predicted RBP	13.66	□□□□□ -0.22
SNU13-208	ENST00000488571	LENG1	Q96BZ8	264 aa	Predicted RBP	13.66	□□□□□ -0.22
SNU13-208	ENST00000488571	KANSL2	Q9H9L4	492 aa		13.66	□□□□□ -0.22
SNU13-208	ENST00000488571	PPP1R9A	Q9ULJ8	1098 aa		13.66	□□□□□ -0.22
SNU13-208	ENST00000488571	DIS3	Q9Y2L1	958 aa	Known RBP	13.66	□□□□□ -0.22
SNU13-208	ENST00000488571	TACC3	Q9Y6A5	838 aa		13.66	□□□□□ -0.22
SNU13-208	ENST00000488571		A0A1W2PQ45	241 aa	Predicted RBP	13.65	□□□□□ -0.22
SNU13-208	ENST00000488571		A0A1W2PQY0	241 aa		13.65	□□□□□ -0.22
SNU13-208	ENST00000488571	ADAMTS4	O75173	837 aa		13.65	□□□□□ -0.22
SNU13-208	ENST00000488571	HMMR	O75330	724 aa		13.65	□□□□□ -0.22
SNU13-208	ENST00000488571	CLTB	P09497	229 aa		13.65	□□□□□ -0.22
SNU13-208	ENST00000488571	KCTD2	Q14681	263 aa		13.65	□□□□□ -0.22
SNU13-208	ENST00000488571	MYLIP	Q8WY64	445 aa		13.65	□□□□□ -0.22
SNU13-208	ENST00000488571	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.65	□□□□□ -0.22
SNU13-208	ENST00000488571	PUS7L	Q9H0K6	701 aa	Known RBP	13.65	□□□□□ -0.22
SNU13-208	ENST00000488571	GOPC	Q9HD26	462 aa		13.65	□□□□□ -0.22
SNU13-208	ENST00000488571	BOLA1	Q9Y3E2	137 aa		13.65	□□□□□ -0.22
SNU13-208	ENST00000488571	SLC4A4	Q9Y6R1	1079 aa		13.65	□□□□□ -0.22
SNU13-208	ENST00000488571	KIAA0355	O15063	1070 aa		13.64	□□□□□ -0.23
SNU13-208	ENST00000488571	AKR1A1	P14550	325 aa		13.64	□□□□□ -0.23
SNU13-208	ENST00000488571	RNF180	Q86T96	592 aa		13.64	□□□□□ -0.23
SNU13-208	ENST00000488571	AMOTL1	Q8IY63	956 aa		13.64	□□□□□ -0.23
SNU13-208	ENST00000488571	COG6	Q9Y2V7	657 aa		13.64	□□□□□ -0.23
SNU13-208	ENST00000488571	RAD21	O60216	631 aa		13.63	□□□□□ -0.23
SNU13-208	ENST00000488571	PQBP1	O60828	265 aa	Known RBP	13.63	□□□□□ -0.23
SNU13-208	ENST00000488571	SNAI1	O95863	264 aa	Predicted RBP	13.63	□□□□□ -0.23
SNU13-208	ENST00000488571	RASA1	P20936	1047 aa		13.63	□□□□□ -0.23
SNU13-208	ENST00000488571	FAAP100	Q0VG06	881 aa		13.63	□□□□□ -0.23
SNU13-208	ENST00000488571	CCSAP	Q6IQ19	270 aa	Predicted RBP	13.63	□□□□□ -0.23
SNU13-208	ENST00000488571	RNPC3	Q96LT9	517 aa	Known RBP	13.63	□□□□□ -0.23
SNU13-208	ENST00000488571	NUP88	Q99567	741 aa	Predicted RBP	13.63	□□□□□ -0.23
SNU13-208	ENST00000488571	SLF1	Q9BQI6	1058 aa		13.63	□□□□□ -0.23
SNU13-208	ENST00000488571	DDX19B	Q9UMR2	479 aa		13.63	□□□□□ -0.23
SNU13-208	ENST00000488571	RIPK3	Q9Y572	518 aa		13.63	□□□□□ -0.23
SNU13-208	ENST00000488571	SYNRG	Q9UMZ2	1314 aa		13.63	□□□□□ -0.23
SNU13-208	ENST00000488571	DNAJC25-GNG10	A0A024R161	153 aa		13.62	□□□□□ -0.23
SNU13-208	ENST00000488571	MS4A1	P11836	297 aa		13.62	□□□□□ -0.23
SNU13-208	ENST00000488571	RAG1	P15918	1043 aa		13.62	□□□□□ -0.23
SNU13-208	ENST00000488571	COPB2	P35606	906 aa		13.62	□□□□□ -0.23
SNU13-208	ENST00000488571	ACLY	P53396	1101 aa		13.62	□□□□□ -0.23
SNU13-208	ENST00000488571	SNRNP48	Q6IEG0	339 aa	Known RBP	13.62	□□□□□ -0.23
SNU13-208	ENST00000488571	MAMDC4	Q6UXC1	1216 aa		13.62	□□□□□ -0.23
SNU13-208	ENST00000488571	ANKRD33	Q7Z3H0	272 aa		13.62	□□□□□ -0.23
SNU13-208	ENST00000488571	KLHDC9	Q8NEP7	349 aa		13.62	□□□□□ -0.23
SNU13-208	ENST00000488571	DDRGK1	Q96HY6	314 aa		13.62	□□□□□ -0.23
SNU13-208	ENST00000488571	TOX2	Q96NM4	488 aa		13.62	□□□□□ -0.23
SNU13-208	ENST00000488571	TSEN34	Q9BSV6	310 aa	Known RBP	13.62	□□□□□ -0.23
SNU13-208	ENST00000488571	TEX13B	Q9BXU2	312 aa		13.62	□□□□□ -0.23
SNU13-208	ENST00000488571	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.62	□□□□□ -0.23
SNU13-208	ENST00000488571	CNPY2	Q9Y2B0	182 aa		13.62	□□□□□ -0.23
SNU13-208	ENST00000488571	MYH4	Q9Y623	1939 aa		13.62	□□□□□ -0.23
SNU13-208	ENST00000488571	SYNGAP1	Q96PV0	1343 aa		13.62	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms