RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 TLL1O43897 1013 aa11.25□□□□□ -0.61
COL17A1-207ENST00000488320 RAD21O60216 631 aa11.25□□□□□ -0.61
COL17A1-207ENST00000488320 COPB2P35606 906 aa11.25□□□□□ -0.61
COL17A1-207ENST00000488320 SLC4A3P48751 1232 aa11.25□□□□□ -0.61
COL17A1-207ENST00000488320 CCL23P55773 120 aa11.25□□□□□ -0.61
COL17A1-207ENST00000488320 IRX5P78411 483 aaPredicted RBP11.25□□□□□ -0.61
COL17A1-207ENST00000488320 MTX1Q13505 466 aa11.25□□□□□ -0.61
COL17A1-207ENST00000488320 TNNI3KQ59H18 835 aa11.25□□□□□ -0.61
COL17A1-207ENST00000488320 TMEM179Q6ZVK1 233 aa11.25□□□□□ -0.61
COL17A1-207ENST00000488320 FAM126BQ8IXS8 530 aa11.25□□□□□ -0.61
COL17A1-207ENST00000488320 HIPK3Q9H422 1215 aa11.25□□□□□ -0.61
COL17A1-207ENST00000488320 CERS4Q9HA82 394 aa11.25□□□□□ -0.61
COL17A1-207ENST00000488320 MCM9Q9NXL9 1143 aa11.25□□□□□ -0.61
COL17A1-207ENST00000488320 PCDHA11Q9Y5I1 949 aa11.25□□□□□ -0.61
COL17A1-207ENST00000488320 MTCH2Q9Y6C9 303 aa11.25□□□□□ -0.61
COL17A1-207ENST00000488320 FPGT-TNNI3KV9GXZ4 949 aa11.25□□□□□ -0.61
COL17A1-207ENST00000488320 COL11A1P12107 1806 aaPredicted RBP11.25□□□□□ -0.61
COL17A1-207ENST00000488320 A0A0G2JMZ2 1700 aa11.24□□□□□ -0.61
COL17A1-207ENST00000488320 WDR46O15213 610 aaKnown RBP11.24□□□□□ -0.61
COL17A1-207ENST00000488320 GNAI2P04899 355 aa11.24□□□□□ -0.61
COL17A1-207ENST00000488320 ACVR2BQ13705 512 aa11.24□□□□□ -0.61
COL17A1-207ENST00000488320 TMEM67Q5HYA8 995 aa11.24□□□□□ -0.61
COL17A1-207ENST00000488320 MSL3Q8N5Y2 521 aaKnown RBP11.24□□□□□ -0.61
COL17A1-207ENST00000488320 HLA-CQ95604 372 aa11.24□□□□□ -0.61
COL17A1-207ENST00000488320 UIMC1Q96RL1 719 aa11.24□□□□□ -0.61
COL17A1-207ENST00000488320 VCPKMTQ9H867 229 aa11.24□□□□□ -0.61
COL17A1-207ENST00000488320 GPR108Q9NPR9 543 aa11.24□□□□□ -0.61
COL17A1-207ENST00000488320 TMX2Q9Y320 296 aa11.24□□□□□ -0.61
COL17A1-207ENST00000488320 ROBO3Q96MS0 1386 aa11.24□□□□□ -0.61
COL17A1-207ENST00000488320 PNMA6EA0A0J9YXQ4 647 aa11.23□□□□□ -0.61
COL17A1-207ENST00000488320 SNAI1O95863 264 aaPredicted RBP11.23□□□□□ -0.61
COL17A1-207ENST00000488320 CD4P01730 458 aa11.23□□□□□ -0.61
COL17A1-207ENST00000488320 ATP2A2P16615 1042 aaKnown RBP11.23□□□□□ -0.61
COL17A1-207ENST00000488320 CST5P28325 142 aaPredicted RBP11.23□□□□□ -0.61
COL17A1-207ENST00000488320 GJA9P57773 515 aa11.23□□□□□ -0.61
COL17A1-207ENST00000488320 ICA1Q05084 483 aa11.23□□□□□ -0.61
COL17A1-207ENST00000488320 GABPAQ06546 454 aa11.23□□□□□ -0.61
COL17A1-207ENST00000488320 NOL8Q76FK4 1167 aaKnown RBP11.23□□□□□ -0.61
COL17A1-207ENST00000488320 ZNF512BQ96KM6 892 aaPredicted RBP11.23□□□□□ -0.61
COL17A1-207ENST00000488320 FBXO28Q9NVF7 368 aa11.23□□□□□ -0.61
COL17A1-207ENST00000488320 CTDP1Q9Y5B0 961 aaPredicted RBP11.23□□□□□ -0.61
COL17A1-207ENST00000488320 CHD9Q3L8U1 2897 aa11.22□□□□□ -0.61
COL17A1-207ENST00000488320 MAGEB6P1A0A0J9YX57 407 aa11.22□□□□□ -0.61
COL17A1-207ENST00000488320 PI4K2BG5E9Z4 385 aa11.22□□□□□ -0.61
COL17A1-207ENST00000488320 VWA5AO00534 786 aa11.22□□□□□ -0.61
COL17A1-207ENST00000488320 MRE11P49959 708 aa11.22□□□□□ -0.61
COL17A1-207ENST00000488320 SLFN5Q08AF3 891 aa11.22□□□□□ -0.61
COL17A1-207ENST00000488320 CCDC144BQ3MJ40 725 aa11.22□□□□□ -0.61
COL17A1-207ENST00000488320 UMODL1Q5DID0 1318 aa11.22□□□□□ -0.61
COL17A1-207ENST00000488320 PRRC2BQ5JSZ5 2229 aaKnown RBP11.22□□□□□ -0.61
COL17A1-207ENST00000488320 CLEC10AQ8IUN9 316 aa11.22□□□□□ -0.61
COL17A1-207ENST00000488320 ARNTL2Q8WYA1 636 aa11.22□□□□□ -0.61
COL17A1-207ENST00000488320 KHSRPQ92945 711 aaKnown RBP eCLIP11.22□□□□□ -0.61
COL17A1-207ENST00000488320 CRNKL1Q9BZJ0 848 aaKnown RBP11.22□□□□□ -0.61
COL17A1-207ENST00000488320 CCDC8Q9H0W5 538 aaPredicted RBP11.22□□□□□ -0.61
COL17A1-207ENST00000488320 ABHD16BQ9H3Z7 469 aa11.22□□□□□ -0.61
COL17A1-207ENST00000488320 C11orf16Q9NQ32 467 aa11.22□□□□□ -0.61
COL17A1-207ENST00000488320 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.22□□□□□ -0.61
COL17A1-207ENST00000488320 SWAP70Q9UH65 585 aa11.22□□□□□ -0.61
COL17A1-207ENST00000488320 ADAMTS5Q9UNA0 930 aa11.22□□□□□ -0.61
COL17A1-207ENST00000488320 REV3LO60673 3130 aa11.22□□□□□ -0.61
COL17A1-207ENST00000488320 LRRC37A2A6NM11 1700 aa11.21□□□□□ -0.61
COL17A1-207ENST00000488320 CA3P07451 260 aa11.21□□□□□ -0.61
COL17A1-207ENST00000488320 AKR1B1P15121 316 aa11.21□□□□□ -0.61
COL17A1-207ENST00000488320 POU3F3P20264 500 aaPredicted RBP11.21□□□□□ -0.61
COL17A1-207ENST00000488320 BEX3Q00994 111 aa11.21□□□□□ -0.61
COL17A1-207ENST00000488320 EVX2Q03828 476 aa11.21□□□□□ -0.61
COL17A1-207ENST00000488320 KRT40Q6A162 431 aa11.21□□□□□ -0.61
COL17A1-207ENST00000488320 MAMDC4Q6UXC1 1216 aa11.21□□□□□ -0.61
COL17A1-207ENST00000488320 SIAH1Q8IUQ4 282 aa11.21□□□□□ -0.61
COL17A1-207ENST00000488320 SCLYQ96I15 445 aa11.21□□□□□ -0.61
COL17A1-207ENST00000488320 UPF3AQ9H1J1 476 aaKnown RBP11.21□□□□□ -0.61
COL17A1-207ENST00000488320 PPP1R9AQ9ULJ8 1098 aa11.21□□□□□ -0.61
COL17A1-207ENST00000488320 MYH8P13535 1937 aa11.21□□□□□ -0.62
COL17A1-207ENST00000488320 PRR33A8MZF0 331 aa11.2□□□□□ -0.62
COL17A1-207ENST00000488320 KIF28PB7ZC32 967 aa11.2□□□□□ -0.62
COL17A1-207ENST00000488320 SURF6O75683 361 aaKnown RBP11.2□□□□□ -0.62
COL17A1-207ENST00000488320 CABYRO75952 493 aa11.2□□□□□ -0.62
COL17A1-207ENST00000488320 CYP2D6P10635 497 aa11.2□□□□□ -0.62
COL17A1-207ENST00000488320 ITGA7Q13683 1181 aa11.2□□□□□ -0.62
COL17A1-207ENST00000488320 CSPP1Q1MSJ5 1256 aa11.2□□□□□ -0.62
COL17A1-207ENST00000488320 SNRNP48Q6IEG0 339 aaKnown RBP11.2□□□□□ -0.62
COL17A1-207ENST00000488320 CXCL17Q6UXB2 119 aa11.2□□□□□ -0.62
COL17A1-207ENST00000488320 ANKRD35Q8N283 1001 aa11.2□□□□□ -0.62
COL17A1-207ENST00000488320 DYNLL2Q96FJ2 89 aa11.2□□□□□ -0.62
COL17A1-207ENST00000488320 SNX27Q96L92 541 aa11.2□□□□□ -0.62
COL17A1-207ENST00000488320 RIOK1Q9BRS2 568 aaKnown RBP11.2□□□□□ -0.62
COL17A1-207ENST00000488320 TRPV6Q9H1D0 765 aa11.2□□□□□ -0.62
COL17A1-207ENST00000488320 ANTXR1Q9H6X2 564 aa11.2□□□□□ -0.62
COL17A1-207ENST00000488320 GOPCQ9HD26 462 aa11.2□□□□□ -0.62
COL17A1-207ENST00000488320 ZNF214Q9UL59 606 aaPredicted RBP11.2□□□□□ -0.62
COL17A1-207ENST00000488320 PARP14Q460N5 1801 aa11.2□□□□□ -0.62
COL17A1-207ENST00000488320 NAV1Q8NEY1 1877 aa11.19□□□□□ -0.62
COL17A1-207ENST00000488320 ADCY6O43306 1168 aa11.19□□□□□ -0.62
COL17A1-207ENST00000488320 ZEB2O60315 1214 aa11.19□□□□□ -0.62
COL17A1-207ENST00000488320 ACTN1P12814 892 aa11.19□□□□□ -0.62
COL17A1-207ENST00000488320 EEF2P13639 858 aaKnown RBP11.19□□□□□ -0.62
COL17A1-207ENST00000488320 TNFAIP2Q03169 654 aa11.19□□□□□ -0.62
COL17A1-207ENST00000488320 FAM83BQ5T0W9 1011 aa11.19□□□□□ -0.62
COL17A1-207ENST00000488320 TMED8Q6PL24 325 aaPredicted RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms