RNA–Protein interactions for RNA: ENST00000488058.1

RNF38-208, Transcript of ring finger protein 38, human

TSL 3

Gene RNF38, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF38-208	ENST00000488058	CCND3	P30281	292 aa	Predicted RBP	28	■■■□□ 2.07
RNF38-208	ENST00000488058	SNRNP48	Q6IEG0	339 aa	Known RBP	28	■■■□□ 2.07
RNF38-208	ENST00000488058	GMCL1	Q96IK5	515 aa		28	■■■□□ 2.07
RNF38-208	ENST00000488058	MMP19	Q99542	508 aa		28	■■■□□ 2.07
RNF38-208	ENST00000488058	ZNFX1	Q9P2E3	1918 aa	Known RBP	28	■■■□□ 2.07
RNF38-208	ENST00000488058	NEDD4	P46934	1319 aa		27.99	■■■□□ 2.07
RNF38-208	ENST00000488058	COPB2	P35606	906 aa		27.99	■■■□□ 2.07
RNF38-208	ENST00000488058	PRPF38B	Q5VTL8	546 aa	Known RBP	27.99	■■■□□ 2.07
RNF38-208	ENST00000488058	KCTD1	Q719H9	257 aa		27.99	■■■□□ 2.07
RNF38-208	ENST00000488058	RASGRP2	Q7LDG7	609 aa		27.99	■■■□□ 2.07
RNF38-208	ENST00000488058	RUFY2	Q8WXA3	655 aa		27.99	■■■□□ 2.07
RNF38-208	ENST00000488058	TEX13B	Q9BXU2	312 aa		27.99	■■■□□ 2.07
RNF38-208	ENST00000488058	CRISPLD2	Q9H0B8	497 aa		27.99	■■■□□ 2.07
RNF38-208	ENST00000488058	SLC5A4	Q9NY91	659 aa		27.99	■■■□□ 2.07
RNF38-208	ENST00000488058	COBL	O75128	1261 aa		27.98	■■■□□ 2.07
RNF38-208	ENST00000488058	CYP2C19	P33261	490 aa		27.98	■■■□□ 2.07
RNF38-208	ENST00000488058	STAT2	P52630	851 aa		27.98	■■■□□ 2.07
RNF38-208	ENST00000488058	KCTD2	Q14681	263 aa		27.98	■■■□□ 2.07
RNF38-208	ENST00000488058	IMMT	Q16891	758 aa	Known RBP	27.98	■■■□□ 2.07
RNF38-208	ENST00000488058	CCDC96	Q2M329	555 aa		27.98	■■■□□ 2.07
RNF38-208	ENST00000488058	ABRA	Q8N0Z2	381 aa		27.98	■■■□□ 2.07
RNF38-208	ENST00000488058	RAVER2	Q9HCJ3	691 aa	Known RBP	27.98	■■■□□ 2.07
RNF38-208	ENST00000488058	CTNNA3	Q9UI47	895 aa		27.98	■■■□□ 2.07
RNF38-208	ENST00000488058	RAD50	Q92878	1312 aa		27.97	■■■□□ 2.07
RNF38-208	ENST00000488058	CHML	P26374	656 aa		27.97	■■■□□ 2.07
RNF38-208	ENST00000488058	FAM160B2	Q86V87	743 aa		27.97	■■■□□ 2.07
RNF38-208	ENST00000488058	CHURC1	Q8WUH1	139 aa		27.97	■■■□□ 2.07
RNF38-208	ENST00000488058	ESR2	Q92731	530 aa		27.97	■■■□□ 2.07
RNF38-208	ENST00000488058	TOP1	P11387	765 aa	Known RBP	27.96	■■■□□ 2.07
RNF38-208	ENST00000488058	CNGA1	P29973	690 aa		27.96	■■■□□ 2.07
RNF38-208	ENST00000488058	RCSD1	Q6JBY9	416 aa		27.96	■■■□□ 2.07
RNF38-208	ENST00000488058	TMEM47	Q9BQJ4	181 aa		27.96	■■■□□ 2.07
RNF38-208	ENST00000488058	ZKSCAN3	Q9BRR0	538 aa		27.96	■■■□□ 2.07
RNF38-208	ENST00000488058	SLC38A10	Q9HBR0	1119 aa		27.96	■■■□□ 2.07
RNF38-208	ENST00000488058	TCP11L1	Q9NUJ3	509 aa		27.96	■■■□□ 2.07
RNF38-208	ENST00000488058	PGK2	P07205	417 aa		27.95	■■■□□ 2.06
RNF38-208	ENST00000488058	CAPN2	P17655	700 aa		27.95	■■■□□ 2.06
RNF38-208	ENST00000488058	NOV	P48745	357 aa		27.95	■■■□□ 2.06
RNF38-208	ENST00000488058	CENPQ	Q7L2Z9	268 aa	Predicted RBP	27.95	■■■□□ 2.06
RNF38-208	ENST00000488058	DPF3	Q92784	378 aa		27.95	■■■□□ 2.06
RNF38-208	ENST00000488058	RIPK3	Q9Y572	518 aa		27.95	■■■□□ 2.06
RNF38-208	ENST00000488058	PLXNA1	Q9UIW2	1896 aa		27.94	■■■□□ 2.06
RNF38-208	ENST00000488058	OLFML2B	Q68BL8	750 aa		27.94	■■■□□ 2.06
RNF38-208	ENST00000488058	UBE2Q1	Q7Z7E8	422 aa		27.94	■■■□□ 2.06
RNF38-208	ENST00000488058	DCAF4	Q8WV16	495 aa		27.94	■■■□□ 2.06
RNF38-208	ENST00000488058	HTATIP2	Q9BUP3	242 aa		27.94	■■■□□ 2.06
RNF38-208	ENST00000488058		B4E1Z4	1266 aa		27.93	■■■□□ 2.06
RNF38-208	ENST00000488058	KDM4A	O75164	1064 aa		27.93	■■■□□ 2.06
RNF38-208	ENST00000488058	DIS3L	Q8TF46	1054 aa	Known RBP	27.93	■■■□□ 2.06
RNF38-208	ENST00000488058	PAWR	Q96IZ0	340 aa	Known RBP	27.93	■■■□□ 2.06
RNF38-208	ENST00000488058	MAML3	Q96JK9	1138 aa		27.93	■■■□□ 2.06
RNF38-208	ENST00000488058	FRMPD2	Q68DX3	1309 aa	Predicted RBP	27.92	■■■□□ 2.06
RNF38-208	ENST00000488058	ATP2A1	O14983	1001 aa		27.92	■■■□□ 2.06
RNF38-208	ENST00000488058	SKAP1	Q86WV1	359 aa		27.92	■■■□□ 2.06
RNF38-208	ENST00000488058	DDX11	Q96FC9	970 aa		27.92	■■■□□ 2.06
RNF38-208	ENST00000488058	HOMER2	Q9NSB8	354 aa		27.92	■■■□□ 2.06
RNF38-208	ENST00000488058	FRMPD3	Q5JV73	1810 aa		27.91	■■■□□ 2.06
RNF38-208	ENST00000488058	FDX1	P10109	184 aa		27.91	■■■□□ 2.06
RNF38-208	ENST00000488058	OAZ1	P54368	228 aa		27.91	■■■□□ 2.06
RNF38-208	ENST00000488058	SNAP25	P60880	206 aa		27.91	■■■□□ 2.06
RNF38-208	ENST00000488058	CCDC174	Q6PII3	467 aa		27.91	■■■□□ 2.06
RNF38-208	ENST00000488058	ANKLE1	Q8NAG6	615 aa		27.91	■■■□□ 2.06
RNF38-208	ENST00000488058	TTC14	Q96N46	770 aa		27.91	■■■□□ 2.06
RNF38-208	ENST00000488058	GPCPD1	Q9NPB8	672 aa		27.91	■■■□□ 2.06
RNF38-208	ENST00000488058	OGDHL	Q9ULD0	1010 aa		27.91	■■■□□ 2.06
RNF38-208	ENST00000488058	PTH1R	Q03431	593 aa		27.9	■■■□□ 2.06
RNF38-208	ENST00000488058	NECAB2	Q7Z6G3	386 aa		27.9	■■■□□ 2.06
RNF38-208	ENST00000488058	IQCA1	Q86XH1	822 aa		27.9	■■■□□ 2.06
RNF38-208	ENST00000488058	TRPV1	Q8NER1	839 aa		27.9	■■■□□ 2.06
RNF38-208	ENST00000488058	PRR12	Q9ULL5	1215 aa		27.9	■■■□□ 2.06
RNF38-208	ENST00000488058	PLA2G6	O60733	806 aa		27.89	■■■□□ 2.06
RNF38-208	ENST00000488058	CYBA	P13498	195 aa		27.89	■■■□□ 2.06
RNF38-208	ENST00000488058	SLC16A2	P36021	539 aa		27.89	■■■□□ 2.06
RNF38-208	ENST00000488058	TTBK2	Q6IQ55	1244 aa		27.89	■■■□□ 2.06
RNF38-208	ENST00000488058	KRT23	Q9C075	422 aa		27.89	■■■□□ 2.06
RNF38-208	ENST00000488058	DDX20	Q9UHI6	824 aa	Known RBP	27.89	■■■□□ 2.06
RNF38-208	ENST00000488058	MKI67	P46013	3256 aa	Known RBP	27.88	■■■□□ 2.05
RNF38-208	ENST00000488058	SGSM2	O43147	1006 aa		27.88	■■■□□ 2.05
RNF38-208	ENST00000488058	ZNF792	Q3KQV3	632 aa		27.88	■■■□□ 2.05
RNF38-208	ENST00000488058	PRAMEF19	Q5SWL8	479 aa		27.88	■■■□□ 2.05
RNF38-208	ENST00000488058	LHX8	Q68G74	356 aa		27.88	■■■□□ 2.05
RNF38-208	ENST00000488058	ANKRD35	Q8N283	1001 aa		27.88	■■■□□ 2.05
RNF38-208	ENST00000488058	AGBL1	Q96MI9	1066 aa		27.88	■■■□□ 2.05
RNF38-208	ENST00000488058	CNNM2	Q9H8M5	875 aa		27.88	■■■□□ 2.05
RNF38-208	ENST00000488058	FBXO40	Q9UH90	709 aa		27.88	■■■□□ 2.05
RNF38-208	ENST00000488058	IGHA2	P01877	340 aa		27.87	■■■□□ 2.05
RNF38-208	ENST00000488058	PDHB	P11177	359 aa		27.87	■■■□□ 2.05
RNF38-208	ENST00000488058	NT5C2	P49902	561 aa		27.87	■■■□□ 2.05
RNF38-208	ENST00000488058	CCDC178	Q5BJE1	867 aa		27.87	■■■□□ 2.05
RNF38-208	ENST00000488058	CHST13	Q8NET6	341 aa		27.87	■■■□□ 2.05
RNF38-208	ENST00000488058	ZSWIM5	Q9P217	1185 aa		27.87	■■■□□ 2.05
RNF38-208	ENST00000488058	ALAS1	P13196	640 aa		27.86	■■■□□ 2.05
RNF38-208	ENST00000488058	SYDE2	Q5VT97	1194 aa		27.86	■■■□□ 2.05
RNF38-208	ENST00000488058	ANO1	Q5XXA6	986 aa		27.86	■■■□□ 2.05
RNF38-208	ENST00000488058	DGKH	Q86XP1	1220 aa		27.86	■■■□□ 2.05
RNF38-208	ENST00000488058	CCDC136	Q96JN2	1154 aa		27.86	■■■□□ 2.05
RNF38-208	ENST00000488058	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	27.86	■■■□□ 2.05
RNF38-208	ENST00000488058	C11orf49	Q9H6J7	331 aa		27.86	■■■□□ 2.05
RNF38-208	ENST00000488058	RNF146	Q9NTX7	359 aa		27.86	■■■□□ 2.05
RNF38-208	ENST00000488058	DIS3	Q9Y2L1	958 aa	Known RBP	27.86	■■■□□ 2.05

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