RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 DIS3L2Q8IYB7 885 aaKnown RBP16.34■□□□□ 0.21
CUX1-209ENST00000487284 FOXP1Q9H334 677 aaPredicted RBP16.34■□□□□ 0.21
CUX1-209ENST00000487284 ELP3Q9H9T3 547 aa16.34■□□□□ 0.21
CUX1-209ENST00000487284 KCNJ14Q9UNX9 436 aa16.34■□□□□ 0.21
CUX1-209ENST00000487284 TMX2Q9Y320 296 aa16.34■□□□□ 0.21
CUX1-209ENST00000487284 RAD21O60216 631 aa16.34■□□□□ 0.21
CUX1-209ENST00000487284 SCG2P13521 617 aa16.34■□□□□ 0.21
CUX1-209ENST00000487284 CEBPZQ03701 1054 aaKnown RBP16.34■□□□□ 0.21
CUX1-209ENST00000487284 GNL2Q13823 731 aaKnown RBP16.34■□□□□ 0.21
CUX1-209ENST00000487284 ZYXQ15942 572 aaKnown RBP16.34■□□□□ 0.21
CUX1-209ENST00000487284 PFKFB3Q16875 520 aaPredicted RBP16.34■□□□□ 0.21
CUX1-209ENST00000487284 LDLRAD1Q5T700 205 aa16.34■□□□□ 0.21
CUX1-209ENST00000487284 CST9Q5W186 159 aa16.34■□□□□ 0.21
CUX1-209ENST00000487284 NOSTRINQ8IVI9 506 aa16.34■□□□□ 0.21
CUX1-209ENST00000487284 CNKSR2Q8WXI2 1034 aa16.34■□□□□ 0.21
CUX1-209ENST00000487284 PHF20Q9BVI0 1012 aa16.34■□□□□ 0.21
CUX1-209ENST00000487284 ZHX2Q9Y6X8 837 aa16.34■□□□□ 0.21
CUX1-209ENST00000487284 PASKQ96RG2 1323 aa16.34■□□□□ 0.21
CUX1-209ENST00000487284 PTPRFP10586 1907 aa16.33■□□□□ 0.21
CUX1-209ENST00000487284 hCG_1642624A0A1W2PR95 340 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 GOLGA6L4A6NEF3 574 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 GOLGA6L3A6NEY3 463 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 F5H6K3 240 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 TOMM70O94826 608 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 SNHG28P0DPA3 235 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 PDHBP11177 359 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 SMARCA1P28370 1054 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 FKBP1BP68106 108 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 KLRC3Q07444 240 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 SPP2Q13103 211 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 SLC35G1Q2M3R5 365 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 CCDC183Q5T5S1 534 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 USP17L2Q6R6M4 530 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 LINC00301Q8NCQ3 95 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 SMC1BQ8NDV3 1235 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 FEZ1Q99689 392 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 WDR18Q9BV38 432 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 SPZ1Q9BXG8 430 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 SH2D4AQ9H788 454 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 AS3MTQ9HBK9 375 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 VPS54Q9P1Q0 977 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 SYNPO2Q9UMS6 1093 aa16.33■□□□□ 0.2
CUX1-209ENST00000487284 BTBD18B2RXH4 712 aa16.32■□□□□ 0.2
CUX1-209ENST00000487284 NDUFB10O96000 172 aa16.32■□□□□ 0.2
CUX1-209ENST00000487284 PARP1P09874 1014 aaKnown RBP16.32■□□□□ 0.2
CUX1-209ENST00000487284 KIAA1755Q5JYT7 1200 aa16.32■□□□□ 0.2
CUX1-209ENST00000487284 ANO1Q5XXA6 986 aa16.32■□□□□ 0.2
CUX1-209ENST00000487284 SLFN13Q68D06 897 aa16.32■□□□□ 0.2
CUX1-209ENST00000487284 GAS2L3Q86XJ1 694 aa16.32■□□□□ 0.2
CUX1-209ENST00000487284 C2orf69Q8N8R5 385 aa16.32■□□□□ 0.2
CUX1-209ENST00000487284 ZNF280CQ8ND82 737 aa16.32■□□□□ 0.2
CUX1-209ENST00000487284 GMCL1P1Q8NEA9 526 aa16.32■□□□□ 0.2
CUX1-209ENST00000487284 RBM46Q8TBY0 533 aaKnown RBP16.32■□□□□ 0.2
CUX1-209ENST00000487284 KCNG4Q8TDN1 519 aa16.32■□□□□ 0.2
CUX1-209ENST00000487284 VCPKMTQ9H867 229 aa16.32■□□□□ 0.2
CUX1-209ENST00000487284 CLIC4Q9Y696 253 aa16.32■□□□□ 0.2
CUX1-209ENST00000487284 TRIM75PA6NK02 468 aa16.31■□□□□ 0.2
CUX1-209ENST00000487284 USP17L10C9JJH3 530 aa16.31■□□□□ 0.2
CUX1-209ENST00000487284 KLRF2D3W0D1 207 aa16.31■□□□□ 0.2
CUX1-209ENST00000487284 CYTH3O43739 400 aa16.31■□□□□ 0.2
CUX1-209ENST00000487284 GOLGA8HP0CJ92 632 aa16.31■□□□□ 0.2
CUX1-209ENST00000487284 LIG1P18858 919 aa16.31■□□□□ 0.2
CUX1-209ENST00000487284 DGKZQ13574 1117 aa16.31■□□□□ 0.2
CUX1-209ENST00000487284 MTMR2Q13614 643 aa16.31■□□□□ 0.2
CUX1-209ENST00000487284 STK38Q15208 465 aa16.31■□□□□ 0.2
CUX1-209ENST00000487284 NPY5RQ15761 445 aa16.31■□□□□ 0.2
CUX1-209ENST00000487284 SPICE1Q8N0Z3 855 aa16.31■□□□□ 0.2
CUX1-209ENST00000487284 GOPCQ9HD26 462 aa16.31■□□□□ 0.2
CUX1-209ENST00000487284 SH3GLB2Q9NR46 395 aa16.31■□□□□ 0.2
CUX1-209ENST00000487284 FRMPD2Q68DX3 1309 aaPredicted RBP16.3■□□□□ 0.2
CUX1-209ENST00000487284 SPDYE5A6NIY4 337 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 KRT2P35908 639 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 ZNF543Q08ER8 600 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 ASPRV1Q53RT3 343 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 L1TD1Q5T7N2 865 aaKnown RBP16.3■□□□□ 0.2
CUX1-209ENST00000487284 KCTD1Q719H9 257 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 ERO1BQ86YB8 467 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 FAM177A1Q8N128 213 aaPredicted RBP16.3■□□□□ 0.2
CUX1-209ENST00000487284 OXER1Q8TDS5 423 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 OTUD5Q96G74 571 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 NUP88Q99567 741 aaPredicted RBP16.3■□□□□ 0.2
CUX1-209ENST00000487284 KIAA1683Q9H0B3 1180 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 AFG3L2Q9Y4W6 797 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 SYCE3A1L190 88 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 SLC1A4P43007 532 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 BACE1P56817 501 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 NR5A1Q13285 461 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 SLC39A14Q15043 492 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 CCDC96Q2M329 555 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 LRSAM1Q6UWE0 723 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 BICD2Q8TD16 824 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 DCAF4Q8WV16 495 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 CPVLQ9H3G5 476 aa16.3■□□□□ 0.2
CUX1-209ENST00000487284 A0A1W2PQ27 194 aa16.29■□□□□ 0.2
CUX1-209ENST00000487284 A0A1W2PQ64 194 aa16.29■□□□□ 0.2
CUX1-209ENST00000487284 A0A1W2PQD8 194 aa16.29■□□□□ 0.2
CUX1-209ENST00000487284 UNCXA6NJT0 531 aa16.29■□□□□ 0.2
CUX1-209ENST00000487284 SPTLC2O15270 562 aa16.29■□□□□ 0.2
CUX1-209ENST00000487284 LETM1O95202 739 aaPredicted RBP16.29■□□□□ 0.2
CUX1-209ENST00000487284 ME1P48163 572 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms