RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 PNMA1Q8ND90 353 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 FEZ2Q9UHY8 353 aaPredicted RBP18.13■□□□□ 0.49
COL7A1-210ENST00000487017 FAM184BQ9ULE4 1060 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 PPP2R5EQ16537 467 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 CDC23Q9UJX2 597 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 HSPA1LP34931 641 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 DPCR1Q3MIW9 517 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 SRGAP1Q7Z6B7 1085 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 GSDMAQ96QA5 445 aa18.13■□□□□ 0.49
COL7A1-210ENST00000487017 ZNF853P0CG23 659 aa18.12■□□□□ 0.49
COL7A1-210ENST00000487017 ZYXQ15942 572 aaKnown RBP18.12■□□□□ 0.49
COL7A1-210ENST00000487017 ARHGEF2Q92974 986 aaKnown RBP18.12■□□□□ 0.49
COL7A1-210ENST00000487017 CAPS2Q9BXY5 557 aa18.12■□□□□ 0.49
COL7A1-210ENST00000487017 FOXP1Q9H334 677 aaPredicted RBP18.12■□□□□ 0.49
COL7A1-210ENST00000487017 CASP14P31944 242 aa18.12■□□□□ 0.49
COL7A1-210ENST00000487017 BCAMP50895 628 aa18.12■□□□□ 0.49
COL7A1-210ENST00000487017 TSNAXIP1Q2TAA8 658 aa18.12■□□□□ 0.49
COL7A1-210ENST00000487017 RPS8P62241 208 aaKnown RBP18.12■□□□□ 0.49
COL7A1-210ENST00000487017 TPH2Q8IWU9 490 aa18.12■□□□□ 0.49
COL7A1-210ENST00000487017 ZNF526Q8TF50 670 aaPredicted RBP18.12■□□□□ 0.49
COL7A1-210ENST00000487017 CFAP65Q6ZU64 1925 aaKnown RBP18.12■□□□□ 0.49
COL7A1-210ENST00000487017 ATP8B1O43520 1251 aa18.12■□□□□ 0.49
COL7A1-210ENST00000487017 CACTINQ8WUQ7 758 aaKnown RBP18.12■□□□□ 0.49
COL7A1-210ENST00000487017 PANK4Q9NVE7 773 aa18.12■□□□□ 0.49
COL7A1-210ENST00000487017 SLC8A3P57103 927 aa18.11■□□□□ 0.49
COL7A1-210ENST00000487017 ARHGAP24Q8N264 748 aa18.11■□□□□ 0.49
COL7A1-210ENST00000487017 MBD5Q9P267 1494 aa18.11■□□□□ 0.49
COL7A1-210ENST00000487017 DPP8Q6V1X1 898 aaPredicted RBP18.11■□□□□ 0.49
COL7A1-210ENST00000487017 SPATS2Q86XZ4 545 aaKnown RBP18.11■□□□□ 0.49
COL7A1-210ENST00000487017 GPKOWQ92917 476 aaPredicted RBP eCLIP18.11■□□□□ 0.49
COL7A1-210ENST00000487017 ARMCX3Q9UH62 379 aaPredicted RBP18.11■□□□□ 0.49
COL7A1-210ENST00000487017 PHLPP2Q6ZVD8 1323 aa18.11■□□□□ 0.49
COL7A1-210ENST00000487017 SIRT2Q8IXJ6 389 aa18.11■□□□□ 0.49
COL7A1-210ENST00000487017 VPS52Q8N1B4 723 aa18.11■□□□□ 0.49
COL7A1-210ENST00000487017 UBAP1LF5GYI3 381 aa18.11■□□□□ 0.49
COL7A1-210ENST00000487017 FMNL1O95466 1100 aaPredicted RBP18.11■□□□□ 0.49
COL7A1-210ENST00000487017 PCP11498 1178 aaKnown RBP18.11■□□□□ 0.49
COL7A1-210ENST00000487017 ABCB4P21439 1286 aa18.11■□□□□ 0.49
COL7A1-210ENST00000487017 GYG1P46976 350 aa18.11■□□□□ 0.49
COL7A1-210ENST00000487017 PROSER3Q2NL68 480 aa18.11■□□□□ 0.49
COL7A1-210ENST00000487017 LGSNQ5TDP6 509 aa18.11■□□□□ 0.49
COL7A1-210ENST00000487017 GOLGA5Q8TBA6 731 aa18.11■□□□□ 0.49
COL7A1-210ENST00000487017 PDE11AQ9HCR9 933 aa18.11■□□□□ 0.49
COL7A1-210ENST00000487017 RCOR1Q9UKL0 485 aa18.11■□□□□ 0.49
COL7A1-210ENST00000487017 STK10O94804 968 aaKnown RBP18.11■□□□□ 0.49
COL7A1-210ENST00000487017 MAGEF1Q9HAY2 307 aa18.11■□□□□ 0.49
COL7A1-210ENST00000487017 MYO5CQ9NQX4 1742 aa18.11■□□□□ 0.49
COL7A1-210ENST00000487017 GEN1Q17RS7 908 aa18.1■□□□□ 0.49
COL7A1-210ENST00000487017 CDAN1Q8IWY9 1227 aa18.1■□□□□ 0.49
COL7A1-210ENST00000487017 PCDHA12Q9UN75 941 aa18.1■□□□□ 0.49
COL7A1-210ENST00000487017 RNF40O75150 1001 aa18.1■□□□□ 0.49
COL7A1-210ENST00000487017 POLR2FP61218 127 aaKnown RBP18.1■□□□□ 0.49
COL7A1-210ENST00000487017 IGSF1Q8N6C5 1336 aa18.1■□□□□ 0.49
COL7A1-210ENST00000487017 M0R2C6 588 aa18.1■□□□□ 0.49
COL7A1-210ENST00000487017 TBC1D8O95759 1140 aa18.1■□□□□ 0.49
COL7A1-210ENST00000487017 MCTP2Q6DN12 878 aa18.1■□□□□ 0.49
COL7A1-210ENST00000487017 APOA5Q6Q788 366 aa18.1■□□□□ 0.49
COL7A1-210ENST00000487017 CCDC24Q8N4L8 307 aa18.1■□□□□ 0.49
COL7A1-210ENST00000487017 RDH13Q8NBN7 331 aa18.1■□□□□ 0.49
COL7A1-210ENST00000487017 SLC39A2Q9NP94 309 aa18.1■□□□□ 0.49
COL7A1-210ENST00000487017 PRDM15P57071 1507 aaPredicted RBP18.1■□□□□ 0.49
COL7A1-210ENST00000487017 KLRF2D3W0D1 207 aa18.1■□□□□ 0.49
COL7A1-210ENST00000487017 I3L4J1 428 aa18.1■□□□□ 0.49
COL7A1-210ENST00000487017 PSTPIP2Q9H939 334 aa18.1■□□□□ 0.49
COL7A1-210ENST00000487017 PICK1Q9NRD5 415 aa18.1■□□□□ 0.49
COL7A1-210ENST00000487017 CAPN7Q9Y6W3 813 aa18.1■□□□□ 0.49
COL7A1-210ENST00000487017 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.09■□□□□ 0.49
COL7A1-210ENST00000487017 VGLL3A8MV65 326 aa18.09■□□□□ 0.49
COL7A1-210ENST00000487017 GAS7O60861 476 aa18.09■□□□□ 0.49
COL7A1-210ENST00000487017 ADORA1P30542 326 aa18.09■□□□□ 0.49
COL7A1-210ENST00000487017 STX2P32856 288 aa18.09■□□□□ 0.49
COL7A1-210ENST00000487017 TCP10Q12799 353 aa18.09■□□□□ 0.49
COL7A1-210ENST00000487017 SLFN12Q8IYM2 578 aa18.09■□□□□ 0.49
COL7A1-210ENST00000487017 SLC35F6Q8N357 371 aa18.09■□□□□ 0.49
COL7A1-210ENST00000487017 LINC00301Q8NCQ3 95 aa18.09■□□□□ 0.49
COL7A1-210ENST00000487017 VPS37BQ9H9H4 285 aa18.09■□□□□ 0.49
COL7A1-210ENST00000487017 CYP2J2P51589 502 aa18.09■□□□□ 0.49
COL7A1-210ENST00000487017 MGARPQ8TDB4 240 aa18.09■□□□□ 0.49
COL7A1-210ENST00000487017 IWS1Q96ST2 819 aa18.09■□□□□ 0.49
COL7A1-210ENST00000487017 ATP1A2P50993 1020 aa18.09■□□□□ 0.49
COL7A1-210ENST00000487017 ANKRD42Q8N9B4 389 aa18.09■□□□□ 0.49
COL7A1-210ENST00000487017 TMOD4Q9NZQ9 345 aa18.09■□□□□ 0.49
COL7A1-210ENST00000487017 KIF23Q02241 960 aaPredicted RBP18.09■□□□□ 0.49
COL7A1-210ENST00000487017 APBA1Q02410 837 aa18.09■□□□□ 0.49
COL7A1-210ENST00000487017 RPUSD2Q8IZ73 545 aaKnown RBP18.09■□□□□ 0.49
COL7A1-210ENST00000487017 SF3A3Q12874 501 aaKnown RBP eCLIP18.08■□□□□ 0.493e-6■■■■■ 44.5
COL7A1-210ENST00000487017 BCAS4Q8TDM0 211 aa18.08■□□□□ 0.49
COL7A1-210ENST00000487017 RNF26Q9BY78 433 aaPredicted RBP18.08■□□□□ 0.49
COL7A1-210ENST00000487017 PUS3Q9BZE2 481 aaKnown RBP18.08■□□□□ 0.49
COL7A1-210ENST00000487017 PFDN4Q9NQP4 134 aa18.08■□□□□ 0.49
COL7A1-210ENST00000487017 PDE8BO95263 885 aa18.08■□□□□ 0.49
COL7A1-210ENST00000487017 CNOT6LQ96LI5 555 aaKnown RBP18.08■□□□□ 0.49
COL7A1-210ENST00000487017 HOMER3Q9NSC5 361 aa18.08■□□□□ 0.49
COL7A1-210ENST00000487017 BAIAP2L1Q9UHR4 511 aa18.08■□□□□ 0.49
COL7A1-210ENST00000487017 CEP170Q5SW79 1584 aa18.08■□□□□ 0.48
COL7A1-210ENST00000487017 FRMPD2Q68DX3 1309 aaPredicted RBP18.08■□□□□ 0.48
COL7A1-210ENST00000487017 PHKA1P46020 1223 aa18.08■□□□□ 0.48
COL7A1-210ENST00000487017 TRAPPC10P48553 1259 aa18.08■□□□□ 0.48
COL7A1-210ENST00000487017 RBL2Q08999 1139 aa18.08■□□□□ 0.48
COL7A1-210ENST00000487017 P3H4Q92791 437 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms