RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 SYMPKQ92797 1274 aaKnown RBP13.81□□□□□ -0.2
SHROOM3-208ENST00000486758 GNAT2P19087 354 aa13.81□□□□□ -0.2
SHROOM3-208ENST00000486758 TFAP4Q01664 338 aa13.81□□□□□ -0.2
SHROOM3-208ENST00000486758 BEND6Q5SZJ8 279 aaPredicted RBP13.81□□□□□ -0.2
SHROOM3-208ENST00000486758 ALDH8A1Q9H2A2 487 aaPredicted RBP13.81□□□□□ -0.2
SHROOM3-208ENST00000486758 KRT86O43790 486 aa13.81□□□□□ -0.2
SHROOM3-208ENST00000486758 GGCXP38435 758 aa13.81□□□□□ -0.2
SHROOM3-208ENST00000486758 LRP10Q7Z4F1 713 aa13.81□□□□□ -0.2
SHROOM3-208ENST00000486758 TMTC1Q8IUR5 882 aa13.81□□□□□ -0.2
SHROOM3-208ENST00000486758 DYNLL2Q96FJ2 89 aa13.81□□□□□ -0.2
SHROOM3-208ENST00000486758 LRRIQ3A6PVS8 624 aaPredicted RBP13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 HSF2BPO75031 334 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 PRDX5P30044 214 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 HIBADHP31937 336 aaKnown RBP13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 PAFAH1B1P43034 410 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 PLCD1P51178 756 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 JAKMIP2Q96AA8 810 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 SCLT1Q96NL6 688 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 INTS13Q9NVM9 706 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 FRMD3A2A2Y4 597 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 GOLGA6L10A6NI86 522 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 RFC4P35249 363 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 KIF5AQ12840 1032 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 DIXDC1Q155Q3 683 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 ZSCAN10Q96SZ4 725 aaPredicted RBP13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 CHP1Q99653 195 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 TMX4Q9H1E5 349 aaPredicted RBP13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 ANKZF1Q9H8Y5 726 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 MMP1P03956 469 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 KRT18P05783 430 aaKnown RBP13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 RESP18Q5W5W9 173 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 TGFBRAP1Q8WUH2 860 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 CELF1Q92879 486 aaKnown RBP13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 EHD4Q9H223 541 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 HSD3B7Q9H2F3 369 aa13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 EPN1Q9Y6I3 576 aaPredicted RBP13.8□□□□□ -0.2
SHROOM3-208ENST00000486758 USP17L8P0C7I0 530 aa13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 MCM3P25205 808 aa13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 MAP2K2P36507 400 aa13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 GUCY2FP51841 1108 aa13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 NAPAP54920 295 aa13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 IQCEQ6IPM2 695 aa13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 ENOX1Q8TC92 643 aaKnown RBP13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 MYCBPQ99417 103 aaPredicted RBP13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 MMRN2Q9H8L6 949 aa13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 ZNF185O15231 689 aa13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 MFAP3LO75121 409 aa13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 PPP6R2O75170 966 aa13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 SPATA1Q5VX52 437 aa13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 TICAM2Q86XR7 235 aa13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 NELFBQ8WX92 580 aa13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 CCDC42Q96M95 316 aa13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 JPH2Q9BR39 696 aaPredicted RBP13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 LTN1O94822 1766 aa13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 IL6STP40189 918 aaPredicted RBP13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 WHAMMP3Q1A5X7 153 aa13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 CCDC91Q7Z6B0 441 aa13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 CRACR2BQ8N4Y2 399 aaPredicted RBP13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 CAPS2Q9BXY5 557 aa13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 SEC63Q9UGP8 760 aaKnown RBP13.79□□□□□ -0.2
SHROOM3-208ENST00000486758 ASIC1P78348 528 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 CKAP4Q07065 602 aaKnown RBP13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 PDCLQ13371 301 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 GBP6Q6ZN66 633 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 RSRC2Q7L4I2 434 aaKnown RBP13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 TADA2BQ86TJ2 420 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 IGDCC4Q8TDY8 1250 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 GOLGA6L7A0A1B0GV03 622 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 STRCP1A6NGW2 1772 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 FMNL1O95466 1100 aaPredicted RBP13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 KIF5BP33176 963 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 CYLC1P35663 651 aaPredicted RBP13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 LRRC31Q6UY01 552 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 SLC44A5Q8NCS7 719 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 RPGRQ92834 1020 aaKnown RBP13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 MED4Q9NPJ6 270 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 FMN2Q9NZ56 1722 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 KCNJ18B7U540 433 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 FOXP2O15409 715 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 PPFIA4O75335 1185 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 IFNAR1P17181 557 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 BMP6P22004 513 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 RPS8P62241 208 aaKnown RBP13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 KCNJ12Q14500 433 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 INF2Q27J81 1249 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 CACNA2D4Q7Z3S7 1137 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 IQUBQ8NA54 791 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 TUBE1Q9UJT0 475 aa13.78□□□□□ -0.2
SHROOM3-208ENST00000486758 ECM2O94769 699 aaPredicted RBP13.77□□□□□ -0.2
SHROOM3-208ENST00000486758 KCNJ6P48051 423 aa13.77□□□□□ -0.2
SHROOM3-208ENST00000486758 PAK1Q13153 545 aa13.77□□□□□ -0.2
SHROOM3-208ENST00000486758 USO1O60763 962 aaKnown RBP13.77□□□□□ -0.21
SHROOM3-208ENST00000486758 LDHBP07195 334 aaKnown RBP13.77□□□□□ -0.21
SHROOM3-208ENST00000486758 TBC1D8BQ0IIM8 1120 aa13.77□□□□□ -0.21
SHROOM3-208ENST00000486758 MORC3Q14149 939 aa13.77□□□□□ -0.21
SHROOM3-208ENST00000486758 SLC4A9Q96Q91 983 aa13.77□□□□□ -0.21
SHROOM3-208ENST00000486758 MMS19Q96T76 1030 aa13.77□□□□□ -0.21
SHROOM3-208ENST00000486758 UBA5Q9GZZ9 404 aa13.77□□□□□ -0.21
SHROOM3-208ENST00000486758 PPANQ9NQ55 473 aaKnown RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms