RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 RBM47A0AV96 593 aaKnown RBP8.35□□□□□ -1.07
HDAC3-209ENST00000486618 CXCL11O14625 94 aa8.35□□□□□ -1.07
HDAC3-209ENST00000486618 BCRP11274 1271 aa8.35□□□□□ -1.07
HDAC3-209ENST00000486618 INPP5BP32019 993 aa8.35□□□□□ -1.07
HDAC3-209ENST00000486618 RNF144AP50876 292 aaPredicted RBP8.35□□□□□ -1.07
HDAC3-209ENST00000486618 EPHA10Q5JZY3 1008 aa8.35□□□□□ -1.07
HDAC3-209ENST00000486618 APOBEC3HQ6NTF7 200 aaKnown RBP8.35□□□□□ -1.07
HDAC3-209ENST00000486618 FASTKD5Q7L8L6 764 aaKnown RBP8.35□□□□□ -1.07
HDAC3-209ENST00000486618 ZSCAN1Q8NBB4 408 aa8.35□□□□□ -1.07
HDAC3-209ENST00000486618 FAM151AQ8WW52 585 aa8.35□□□□□ -1.07
HDAC3-209ENST00000486618 STAP2Q9UGK3 403 aa8.35□□□□□ -1.07
HDAC3-209ENST00000486618 ZNF112Q9UJU3 913 aa8.35□□□□□ -1.07
HDAC3-209ENST00000486618 IQSEC3Q9UPP2 1182 aaPredicted RBP8.35□□□□□ -1.07
HDAC3-209ENST00000486618 DOCK3Q8IZD9 2030 aa8.34□□□□□ -1.07
HDAC3-209ENST00000486618 A0A1W2PRU2 124 aa8.34□□□□□ -1.07
HDAC3-209ENST00000486618 F6X3S4 739 aa8.34□□□□□ -1.07
HDAC3-209ENST00000486618 SOX1O00570 391 aaPredicted RBP8.34□□□□□ -1.07
HDAC3-209ENST00000486618 TNPO2O14787 897 aaKnown RBP8.34□□□□□ -1.07
HDAC3-209ENST00000486618 ALDH1L1O75891 902 aa8.34□□□□□ -1.07
HDAC3-209ENST00000486618 TCF3P15923 654 aa8.34□□□□□ -1.07
HDAC3-209ENST00000486618 BMP8BP34820 402 aa8.34□□□□□ -1.07
HDAC3-209ENST00000486618 FLT3LGP49771 235 aa8.34□□□□□ -1.07
HDAC3-209ENST00000486618 GRIK5Q16478 980 aa8.34□□□□□ -1.07
HDAC3-209ENST00000486618 FOXD4L6Q3SYB3 417 aaPredicted RBP8.34□□□□□ -1.07
HDAC3-209ENST00000486618 NOL9Q5SY16 702 aaKnown RBP8.34□□□□□ -1.07
HDAC3-209ENST00000486618 FOXD4L3Q6VB84 417 aaPredicted RBP8.34□□□□□ -1.07
HDAC3-209ENST00000486618 LYSMD3Q7Z3D4 306 aa8.34□□□□□ -1.07
HDAC3-209ENST00000486618 CYP2U1Q7Z449 544 aa8.34□□□□□ -1.07
HDAC3-209ENST00000486618 APBB1IPQ7Z5R6 666 aaPredicted RBP8.34□□□□□ -1.07
HDAC3-209ENST00000486618 NECAB2Q7Z6G3 386 aa8.34□□□□□ -1.07
HDAC3-209ENST00000486618 GPR161Q8N6U8 529 aaKnown RBP8.34□□□□□ -1.07
HDAC3-209ENST00000486618 DEFB118Q96PH6 123 aa8.34□□□□□ -1.07
HDAC3-209ENST00000486618 PUS3Q9BZE2 481 aaKnown RBP8.34□□□□□ -1.07
HDAC3-209ENST00000486618 OSBPL3Q9H4L5 887 aa8.34□□□□□ -1.07
HDAC3-209ENST00000486618 PRKRIP1Q9H875 184 aaPredicted RBP8.34□□□□□ -1.07
HDAC3-209ENST00000486618 GABRQQ9UN88 632 aa8.34□□□□□ -1.07
HDAC3-209ENST00000486618 SZT2Q5T011 3432 aa8.34□□□□□ -1.07
HDAC3-209ENST00000486618 MEN1O00255 615 aa8.33□□□□□ -1.08
HDAC3-209ENST00000486618 VAMP4O75379 141 aa8.33□□□□□ -1.08
HDAC3-209ENST00000486618 INHAP05111 366 aa8.33□□□□□ -1.08
HDAC3-209ENST00000486618 CYP2C8P10632 490 aa8.33□□□□□ -1.08
HDAC3-209ENST00000486618 ABL2P42684 1182 aa8.33□□□□□ -1.08
HDAC3-209ENST00000486618 VAC14Q08AM6 782 aa8.33□□□□□ -1.08
HDAC3-209ENST00000486618 MOGSQ13724 837 aa8.33□□□□□ -1.08
HDAC3-209ENST00000486618 METTL24Q5JXM2 366 aa8.33□□□□□ -1.08
HDAC3-209ENST00000486618 DEFB123Q8N688 67 aa8.33□□□□□ -1.08
HDAC3-209ENST00000486618 WDR66Q8TBY9 1149 aa8.33□□□□□ -1.08
HDAC3-209ENST00000486618 NANOS1Q8WY41 292 aaKnown RBP8.33□□□□□ -1.08
HDAC3-209ENST00000486618 COA7Q96BR5 231 aa8.33□□□□□ -1.08
HDAC3-209ENST00000486618 PAWRQ96IZ0 340 aaKnown RBP8.33□□□□□ -1.08
HDAC3-209ENST00000486618 SRCIN1Q9C0H9 1055 aa8.33□□□□□ -1.08
HDAC3-209ENST00000486618 SLC45A1Q9Y2W3 748 aa8.33□□□□□ -1.08
HDAC3-209ENST00000486618 RANBP2P49792 3224 aaKnown RBP8.33□□□□□ -1.08
HDAC3-209ENST00000486618 PDE8BO95263 885 aa8.32□□□□□ -1.08
HDAC3-209ENST00000486618 IFIT1P09914 478 aaKnown RBP8.32□□□□□ -1.08
HDAC3-209ENST00000486618 ELNP15502 786 aa8.32□□□□□ -1.08
HDAC3-209ENST00000486618 GPC1P35052 558 aa8.32□□□□□ -1.08
HDAC3-209ENST00000486618 TCP10Q12799 353 aa8.32□□□□□ -1.08
HDAC3-209ENST00000486618 CCDC181Q5TID7 509 aa8.32□□□□□ -1.08
HDAC3-209ENST00000486618 GPAT2Q6NUI2 795 aa8.32□□□□□ -1.08
HDAC3-209ENST00000486618 SND1Q7KZF4 910 aaKnown RBP eCLIP8.32□□□□□ -1.08
HDAC3-209ENST00000486618 PRICKLE2Q7Z3G6 844 aa8.32□□□□□ -1.08
HDAC3-209ENST00000486618 NME8Q8N427 588 aa8.32□□□□□ -1.08
HDAC3-209ENST00000486618 SMCR8Q8TEV9 937 aaPredicted RBP8.32□□□□□ -1.08
HDAC3-209ENST00000486618 UBXN4Q92575 508 aa8.32□□□□□ -1.08
HDAC3-209ENST00000486618 GDF15Q99988 308 aa8.32□□□□□ -1.08
HDAC3-209ENST00000486618 PAK6Q9NQU5 681 aaPredicted RBP8.32□□□□□ -1.08
HDAC3-209ENST00000486618 PICK1Q9NRD5 415 aa8.32□□□□□ -1.08
HDAC3-209ENST00000486618 MAGEC2Q9UBF1 373 aaPredicted RBP8.32□□□□□ -1.08
HDAC3-209ENST00000486618 STXBP5LQ9Y2K9 1186 aa8.32□□□□□ -1.08
HDAC3-209ENST00000486618 ZHX2Q9Y6X8 837 aa8.32□□□□□ -1.08
HDAC3-209ENST00000486618 KIF16BQ96L93 1317 aa8.31□□□□□ -1.08
HDAC3-209ENST00000486618 A0A0G2JLL6 359 aaPredicted RBP8.31□□□□□ -1.08
HDAC3-209ENST00000486618 KRT76Q01546 638 aa8.31□□□□□ -1.08
HDAC3-209ENST00000486618 LRIT3Q3SXY7 679 aa8.31□□□□□ -1.08
HDAC3-209ENST00000486618 CDC42EP5Q6NZY7 148 aa8.31□□□□□ -1.08
HDAC3-209ENST00000486618 SLC4A10Q6U841 1118 aa8.31□□□□□ -1.08
HDAC3-209ENST00000486618 GADL1Q6ZQY3 521 aa8.31□□□□□ -1.08
HDAC3-209ENST00000486618 PRRT2Q7Z6L0 340 aaPredicted RBP8.31□□□□□ -1.08
HDAC3-209ENST00000486618 SCYL3Q8IZE3 742 aa8.31□□□□□ -1.08
HDAC3-209ENST00000486618 ARHGEF10LQ9HCE6 1279 aa8.31□□□□□ -1.08
HDAC3-209ENST00000486618 LRRFIP2Q9Y608 721 aaKnown RBP8.31□□□□□ -1.08
HDAC3-209ENST00000486618 MYH13Q9UKX3 1938 aa8.31□□□□□ -1.08
HDAC3-209ENST00000486618 FANCIQ9NVI1 1328 aa8.3□□□□□ -1.08
HDAC3-209ENST00000486618 CDC14CA4D256 554 aa8.3□□□□□ -1.08
HDAC3-209ENST00000486618 RHOQP17081 205 aa8.3□□□□□ -1.08
HDAC3-209ENST00000486618 EXOSC9Q06265 439 aaKnown RBP8.3□□□□□ -1.08
HDAC3-209ENST00000486618 CLN3Q13286 438 aa8.3□□□□□ -1.08
HDAC3-209ENST00000486618 PUM3Q15397 648 aaKnown RBP8.3□□□□□ -1.08
HDAC3-209ENST00000486618 LRRC24Q50LG9 513 aa8.3□□□□□ -1.08
HDAC3-209ENST00000486618 WDR63Q8IWG1 891 aa8.3□□□□□ -1.08
HDAC3-209ENST00000486618 C7orf61Q8IZ16 206 aa8.3□□□□□ -1.08
HDAC3-209ENST00000486618 PHTF2Q8N3S3 785 aa8.3□□□□□ -1.08
HDAC3-209ENST00000486618 SUCLG2Q96I99 432 aa8.3□□□□□ -1.08
HDAC3-209ENST00000486618 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.3□□□□□ -1.08
HDAC3-209ENST00000486618 USP40Q9NVE5 1235 aa8.3□□□□□ -1.08
HDAC3-209ENST00000486618 GNL3LQ9NVN8 582 aaKnown RBP8.3□□□□□ -1.08
HDAC3-209ENST00000486618 ZMYND8Q9ULU4 1186 aaPredicted RBP8.3□□□□□ -1.08
HDAC3-209ENST00000486618 DAGLAQ9Y4D2 1042 aa8.3□□□□□ -1.08
HDAC3-209ENST00000486618 AFG3L2Q9Y4W6 797 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms