RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 EPHB4P54760 987 aa16.61■□□□□ 0.25
SQSTM1-208ENST00000485412 KANSL2Q9H9L4 492 aa16.61■□□□□ 0.25
SQSTM1-208ENST00000485412 PPP1R9AQ9ULJ8 1098 aa16.61■□□□□ 0.25
SQSTM1-208ENST00000485412 AKR1A1P14550 325 aa16.6■□□□□ 0.25
SQSTM1-208ENST00000485412 ZNF792Q3KQV3 632 aa16.6■□□□□ 0.25
SQSTM1-208ENST00000485412 RIOX2Q8IUF8 465 aa16.6■□□□□ 0.25
SQSTM1-208ENST00000485412 AMOTL1Q8IY63 956 aa16.6■□□□□ 0.25
SQSTM1-208ENST00000485412 CNPY2Q9Y2B0 182 aa16.6■□□□□ 0.25
SQSTM1-208ENST00000485412 RIPK3Q9Y572 518 aa16.6■□□□□ 0.25
SQSTM1-208ENST00000485412 ROBO3Q96MS0 1386 aa16.6■□□□□ 0.25
SQSTM1-208ENST00000485412 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.59■□□□□ 0.25
SQSTM1-208ENST00000485412 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.59■□□□□ 0.25
SQSTM1-208ENST00000485412 DCDC2CA8MYV0 355 aa16.59■□□□□ 0.25
SQSTM1-208ENST00000485412 M0R2C6 588 aa16.59■□□□□ 0.25
SQSTM1-208ENST00000485412 DNAJB2P25686 324 aa16.59■□□□□ 0.25
SQSTM1-208ENST00000485412 COPB2P35606 906 aa16.59■□□□□ 0.25
SQSTM1-208ENST00000485412 STAT3P40763 770 aa16.59■□□□□ 0.25
SQSTM1-208ENST00000485412 IRX5P78411 483 aaPredicted RBP16.59■□□□□ 0.25
SQSTM1-208ENST00000485412 GRIN2CQ14957 1233 aa16.59■□□□□ 0.25
SQSTM1-208ENST00000485412 GOPCQ9HD26 462 aa16.59■□□□□ 0.25
SQSTM1-208ENST00000485412 STARD7Q9NQZ5 370 aa16.59■□□□□ 0.25
SQSTM1-208ENST00000485412 ECHDC1Q9NTX5 307 aa16.59■□□□□ 0.25
SQSTM1-208ENST00000485412 ARPP21Q9UBL0 812 aaPredicted RBP16.59■□□□□ 0.25
SQSTM1-208ENST00000485412 DIS3Q9Y2L1 958 aaKnown RBP16.59■□□□□ 0.25
SQSTM1-208ENST00000485412 MINDY4BA8MYZ0 360 aa16.58■□□□□ 0.24
SQSTM1-208ENST00000485412 PRDM1O75626 825 aa16.58■□□□□ 0.24
SQSTM1-208ENST00000485412 NDUFB10O96000 172 aa16.58■□□□□ 0.24
SQSTM1-208ENST00000485412 ZNF865P0CJ78 1059 aaPredicted RBP16.58■□□□□ 0.24
SQSTM1-208ENST00000485412 TJAP1Q5JTD0 557 aa16.58■□□□□ 0.24
SQSTM1-208ENST00000485412 KBTBD3Q8NAB2 608 aa16.58■□□□□ 0.24
SQSTM1-208ENST00000485412 NUP133Q8WUM0 1156 aa16.58■□□□□ 0.24
SQSTM1-208ENST00000485412 DDRGK1Q96HY6 314 aa16.58■□□□□ 0.24
SQSTM1-208ENST00000485412 TSEN34Q9BSV6 310 aaKnown RBP16.58■□□□□ 0.24
SQSTM1-208ENST00000485412 TTC28Q96AY4 2481 aa16.58■□□□□ 0.24
SQSTM1-208ENST00000485412 FAAP100Q0VG06 881 aa16.57■□□□□ 0.24
SQSTM1-208ENST00000485412 SBK1Q52WX2 424 aa16.57■□□□□ 0.24
SQSTM1-208ENST00000485412 ZSCAN25Q6NSZ9 544 aa16.57■□□□□ 0.24
SQSTM1-208ENST00000485412 ANKRD33Q7Z3H0 272 aa16.57■□□□□ 0.24
SQSTM1-208ENST00000485412 USP38Q8NB14 1042 aa16.57■□□□□ 0.24
SQSTM1-208ENST00000485412 TIFAQ96CG3 184 aa16.57■□□□□ 0.24
SQSTM1-208ENST00000485412 TOX2Q96NM4 488 aa16.57■□□□□ 0.24
SQSTM1-208ENST00000485412 SEC62Q99442 399 aaKnown RBP16.57■□□□□ 0.24
SQSTM1-208ENST00000485412 ZNF576Q9H609 170 aa16.57■□□□□ 0.24
SQSTM1-208ENST00000485412 MYO9BQ13459 2157 aa16.57■□□□□ 0.24
SQSTM1-208ENST00000485412 SYNRGQ9UMZ2 1314 aa16.56■□□□□ 0.24
SQSTM1-208ENST00000485412 IGKV6D-41A0A0C4DH26 115 aa16.56■□□□□ 0.24
SQSTM1-208ENST00000485412 F5H6K3 240 aa16.56■□□□□ 0.24
SQSTM1-208ENST00000485412 GPAA1O43292 621 aa16.56■□□□□ 0.24
SQSTM1-208ENST00000485412 ADAMTS4O75173 837 aa16.56■□□□□ 0.24
SQSTM1-208ENST00000485412 ACLYP53396 1101 aa16.56■□□□□ 0.24
SQSTM1-208ENST00000485412 KLRC3Q07444 240 aa16.56■□□□□ 0.24
SQSTM1-208ENST00000485412 SNRNP48Q6IEG0 339 aaKnown RBP16.56■□□□□ 0.24
SQSTM1-208ENST00000485412 CCDC174Q6PII3 467 aa16.56■□□□□ 0.24
SQSTM1-208ENST00000485412 LRRC47Q8N1G4 583 aaKnown RBP16.56■□□□□ 0.24
SQSTM1-208ENST00000485412 OTUD7AQ8TE49 926 aaPredicted RBP16.56■□□□□ 0.24
SQSTM1-208ENST00000485412 APPBP2Q92624 585 aa16.56■□□□□ 0.24
SQSTM1-208ENST00000485412 SLF1Q9BQI6 1058 aa16.56■□□□□ 0.24
SQSTM1-208ENST00000485412 ZHX1Q9UKY1 873 aaPredicted RBP16.56■□□□□ 0.24
SQSTM1-208ENST00000485412 FAM184BQ9ULE4 1060 aa16.56■□□□□ 0.24
SQSTM1-208ENST00000485412 LCTP09848 1927 aa16.56■□□□□ 0.24
SQSTM1-208ENST00000485412 LRRC37A2A6NM11 1700 aa16.56■□□□□ 0.24
SQSTM1-208ENST00000485412 MYADML2A6NDP7 307 aa16.55■□□□□ 0.24
SQSTM1-208ENST00000485412 MOXD2PA6NHM9 499 aa16.55■□□□□ 0.24
SQSTM1-208ENST00000485412 RNF113AO15541 343 aaKnown RBP16.55■□□□□ 0.24
SQSTM1-208ENST00000485412 ADCY6O43306 1168 aa16.55■□□□□ 0.24
SQSTM1-208ENST00000485412 SNAI1O95863 264 aaPredicted RBP16.55■□□□□ 0.24
SQSTM1-208ENST00000485412 TIMP1P01033 207 aa16.55■□□□□ 0.24
SQSTM1-208ENST00000485412 SLC4A3P48751 1232 aa16.55■□□□□ 0.24
SQSTM1-208ENST00000485412 CCDC129Q6ZRS4 1044 aa16.55■□□□□ 0.24
SQSTM1-208ENST00000485412 MSL3Q8N5Y2 521 aaKnown RBP16.55■□□□□ 0.24
SQSTM1-208ENST00000485412 CEP95Q96GE4 821 aa16.55■□□□□ 0.24
SQSTM1-208ENST00000485412 FGD4Q96M96 766 aa16.55■□□□□ 0.24
SQSTM1-208ENST00000485412 GAS2L1Q99501 681 aaPredicted RBP16.55■□□□□ 0.24
SQSTM1-208ENST00000485412 DCTPP1Q9H773 170 aa16.55■□□□□ 0.24
SQSTM1-208ENST00000485412 NYAP2Q9P242 653 aa16.55■□□□□ 0.24
SQSTM1-208ENST00000485412 CLIP2Q9UDT6 1046 aa16.55■□□□□ 0.24
SQSTM1-208ENST00000485412 MROH7Q68CQ1 1323 aa16.54■□□□□ 0.24
SQSTM1-208ENST00000485412 DNAJC25-GNG10A0A024R161 153 aa16.54■□□□□ 0.24
SQSTM1-208ENST00000485412 TNFRSF10AO00220 468 aa16.54■□□□□ 0.24
SQSTM1-208ENST00000485412 PPIGQ13427 754 aaKnown RBP eCLIP16.54■□□□□ 0.249e-12■■□□□ 13.5
SQSTM1-208ENST00000485412 KCNA10Q16322 511 aa16.54■□□□□ 0.24
SQSTM1-208ENST00000485412 CPXCR1Q8N123 301 aa16.54■□□□□ 0.24
SQSTM1-208ENST00000485412 PPM1EQ8WY54 764 aa16.54■□□□□ 0.24
SQSTM1-208ENST00000485412 VTI1AQ96AJ9 217 aa16.54■□□□□ 0.24
SQSTM1-208ENST00000485412 CHMP4CQ96CF2 233 aa16.54■□□□□ 0.24
SQSTM1-208ENST00000485412 DDX11Q96FC9 970 aa16.54■□□□□ 0.24
SQSTM1-208ENST00000485412 GLT1D1Q96MS3 346 aa16.54■□□□□ 0.24
SQSTM1-208ENST00000485412 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.54■□□□□ 0.243e-12■□□□□ 8.6
SQSTM1-208ENST00000485412 TEX13BQ9BXU2 312 aa16.54■□□□□ 0.24
SQSTM1-208ENST00000485412 MKNK2Q9HBH9 465 aa16.54■□□□□ 0.24
SQSTM1-208ENST00000485412 RAVER2Q9HCJ3 691 aaKnown RBP16.54■□□□□ 0.24
SQSTM1-208ENST00000485412 SYNGAP1Q96PV0 1343 aa16.53■□□□□ 0.24
SQSTM1-208ENST00000485412 MFSD5Q6N075 450 aa16.53■□□□□ 0.24
SQSTM1-208ENST00000485412 GIMAP6Q6P9H5 292 aa16.53■□□□□ 0.24
SQSTM1-208ENST00000485412 RASGRP2Q7LDG7 609 aa16.53■□□□□ 0.24
SQSTM1-208ENST00000485412 KLHDC9Q8NEP7 349 aa16.53■□□□□ 0.24
SQSTM1-208ENST00000485412 KIFC2Q96AC6 838 aa16.53■□□□□ 0.24
SQSTM1-208ENST00000485412 CHMP4BQ9H444 224 aaKnown RBP16.53■□□□□ 0.24
SQSTM1-208ENST00000485412 SPC25Q9HBM1 224 aa16.53■□□□□ 0.24
SQSTM1-208ENST00000485412 TBX21Q9UL17 535 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms