RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 SLC7A5Q01650 507 aa5.31□□□□□ -1.56
VPS41-212ENST00000482217 MAP9Q49MG5 647 aa5.31□□□□□ -1.56
VPS41-212ENST00000482217 CCDC184Q52MB2 194 aa5.31□□□□□ -1.56
VPS41-212ENST00000482217 RNF187Q5TA31 235 aaPredicted RBP5.31□□□□□ -1.56
VPS41-212ENST00000482217 ZNF765Q7L2R6 523 aa5.31□□□□□ -1.56
VPS41-212ENST00000482217 CDH24Q86UP0 819 aa5.31□□□□□ -1.56
VPS41-212ENST00000482217 CELF2-AS1Q8N7Q2 184 aa5.31□□□□□ -1.56
VPS41-212ENST00000482217 PNISRQ8TF01 805 aaKnown RBP5.31□□□□□ -1.56
VPS41-212ENST00000482217 RNF141Q8WVD5 230 aa5.31□□□□□ -1.56
VPS41-212ENST00000482217 JDP2Q8WYK2 163 aa5.31□□□□□ -1.56
VPS41-212ENST00000482217 FBXL18Q96ME1 805 aa5.31□□□□□ -1.56
VPS41-212ENST00000482217 KREMEN1Q96MU8 473 aa5.31□□□□□ -1.56
VPS41-212ENST00000482217 BSDC1Q9NW68 430 aaPredicted RBP5.31□□□□□ -1.56
VPS41-212ENST00000482217 GTF2IRD1Q9UHL9 959 aa5.31□□□□□ -1.56
VPS41-212ENST00000482217 FBXO9Q9UK97 447 aaPredicted RBP5.31□□□□□ -1.56
VPS41-212ENST00000482217 ANGEL1Q9UNK9 670 aaKnown RBP5.31□□□□□ -1.56
VPS41-212ENST00000482217 MAPK8IP1Q9UQF2 711 aa5.31□□□□□ -1.56
VPS41-212ENST00000482217 IGF2BP3O00425 579 aaKnown RBP eCLIP5.3□□□□□ -1.56
VPS41-212ENST00000482217 EPB41L2O43491 1005 aaKnown RBP5.3□□□□□ -1.56
VPS41-212ENST00000482217 DDAH1O94760 285 aa5.3□□□□□ -1.56
VPS41-212ENST00000482217 HOXA10P31260 410 aaPredicted RBP5.3□□□□□ -1.56
VPS41-212ENST00000482217 GP2P55259 537 aaKnown RBP5.3□□□□□ -1.56
VPS41-212ENST00000482217 AMPD3Q01432 767 aa5.3□□□□□ -1.56
VPS41-212ENST00000482217 NBPF12Q5TAG4 269 aaPredicted RBP5.3□□□□□ -1.56
VPS41-212ENST00000482217 WDR78Q5VTH9 848 aa5.3□□□□□ -1.56
VPS41-212ENST00000482217 VHLLQ6RSH7 139 aa5.3□□□□□ -1.56
VPS41-212ENST00000482217 C22orf34Q6ZV56 151 aa5.3□□□□□ -1.56
VPS41-212ENST00000482217 FAM214BQ7L5A3 538 aa5.3□□□□□ -1.56
VPS41-212ENST00000482217 VSIG10LQ86VR7 867 aa5.3□□□□□ -1.56
VPS41-212ENST00000482217 CCAR1Q8IX12 1150 aaKnown RBP5.3□□□□□ -1.56
VPS41-212ENST00000482217 FAM178BQ8IXR5 827 aa5.3□□□□□ -1.56
VPS41-212ENST00000482217 AMOTL1Q8IY63 956 aa5.3□□□□□ -1.56
VPS41-212ENST00000482217 RAVER1Q8IY67 606 aaKnown RBP5.3□□□□□ -1.56
VPS41-212ENST00000482217 RIN3Q8TB24 985 aa5.3□□□□□ -1.56
VPS41-212ENST00000482217 VWCEQ96DN2 955 aa5.3□□□□□ -1.56
VPS41-212ENST00000482217 SLC39A13Q96H72 371 aa5.3□□□□□ -1.56
VPS41-212ENST00000482217 PRDM5Q9NQX1 630 aaPredicted RBP5.3□□□□□ -1.56
VPS41-212ENST00000482217 TPX2Q9ULW0 747 aaKnown RBP5.3□□□□□ -1.56
VPS41-212ENST00000482217 COL17A1Q9UMD9 1497 aaPredicted RBP5.3□□□□□ -1.56
VPS41-212ENST00000482217 KRTAP9-6A0A140TA67 174 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 FAM86C2PA6NEL3 165 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 PRC1O43663 620 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 LEFTY1O75610 366 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 GJB6O95452 261 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 KIR3DL1P43629 444 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 ZNF143P52747 638 aaPredicted RBP5.29□□□□□ -1.56
VPS41-212ENST00000482217 LMOD3Q0VAK6 560 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 GNPTABQ3T906 1256 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 ANKRD39Q53RE8 183 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 SFRP5Q5T4F7 317 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 C6orf15Q6UXA7 325 aaPredicted RBP5.29□□□□□ -1.56
VPS41-212ENST00000482217 PPFIBP1Q86W92 1011 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 SDR16C5Q8N3Y7 309 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 KLHL6Q8WZ60 621 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 IL17RAQ96F46 866 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 SCYL1Q96KG9 808 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 DEPDC7Q96QD5 511 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 SENP7Q9BQF6 1050 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 TMX4Q9H1E5 349 aaPredicted RBP5.29□□□□□ -1.56
VPS41-212ENST00000482217 MKNK2Q9HBH9 465 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 ST7Q9NRC1 585 aa5.29□□□□□ -1.56
VPS41-212ENST00000482217 MAP3K20Q9NYL2 800 aaKnown RBP5.29□□□□□ -1.56
VPS41-212ENST00000482217 PDPK1O15530 556 aa5.28□□□□□ -1.56
VPS41-212ENST00000482217 NAT2P11245 290 aa5.28□□□□□ -1.56
VPS41-212ENST00000482217 RASGRF1Q13972 1273 aa5.28□□□□□ -1.56
VPS41-212ENST00000482217 RASA3Q14644 834 aa5.28□□□□□ -1.56
VPS41-212ENST00000482217 KIAA1211LQ6NV74 962 aa5.28□□□□□ -1.56
VPS41-212ENST00000482217 EEPD1Q7L9B9 569 aa5.28□□□□□ -1.56
VPS41-212ENST00000482217 SHISA5Q8N114 240 aa5.28□□□□□ -1.56
VPS41-212ENST00000482217 STK11IPQ8N1F8 1099 aa5.28□□□□□ -1.56
VPS41-212ENST00000482217 ST13P5Q8NFI4 369 aaPredicted RBP5.28□□□□□ -1.56
VPS41-212ENST00000482217 ZNF669Q96BR6 464 aaPredicted RBP5.28□□□□□ -1.56
VPS41-212ENST00000482217 MRFAP1L1Q96HT8 127 aa5.28□□□□□ -1.56
VPS41-212ENST00000482217 ZNF512BQ96KM6 892 aaPredicted RBP5.28□□□□□ -1.56
VPS41-212ENST00000482217 SRPK1Q96SB4 655 aaKnown RBP5.28□□□□□ -1.56
VPS41-212ENST00000482217 IER2Q9BTL4 223 aa5.28□□□□□ -1.56
VPS41-212ENST00000482217 MKRN2Q9H000 416 aaKnown RBP5.28□□□□□ -1.56
VPS41-212ENST00000482217 EPN3Q9H201 632 aa5.28□□□□□ -1.56
VPS41-212ENST00000482217 SNTG2Q9NY99 539 aa5.28□□□□□ -1.56
VPS41-212ENST00000482217 CCDC39Q9UFE4 941 aa5.28□□□□□ -1.56
VPS41-212ENST00000482217 SFMBT1Q9UHJ3 866 aa5.28□□□□□ -1.56
VPS41-212ENST00000482217 KCNH3Q9ULD8 1083 aa5.28□□□□□ -1.56
VPS41-212ENST00000482217 PCDHB10Q9UN67 800 aa5.28□□□□□ -1.56
VPS41-212ENST00000482217 THRAP3Q9Y2W1 955 aaKnown RBP5.28□□□□□ -1.56
VPS41-212ENST00000482217 SETD1BQ9UPS6 1966 aaKnown RBP5.27□□□□□ -1.57
VPS41-212ENST00000482217 C9IYK1 514 aa5.27□□□□□ -1.57
VPS41-212ENST00000482217 DNAJC6O75061 913 aa5.27□□□□□ -1.57
VPS41-212ENST00000482217 PDGFRBP09619 1106 aa5.27□□□□□ -1.57
VPS41-212ENST00000482217 ZNF865P0CJ78 1059 aaPredicted RBP5.27□□□□□ -1.57
VPS41-212ENST00000482217 IRAK1P51617 712 aa5.27□□□□□ -1.57
VPS41-212ENST00000482217 FAM193AP78312 1265 aa5.27□□□□□ -1.57
VPS41-212ENST00000482217 UBE4AQ14139 1066 aa5.27□□□□□ -1.57
VPS41-212ENST00000482217 CCDC144CPQ8IYA2 1237 aa5.27□□□□□ -1.57
VPS41-212ENST00000482217 IPO4Q8TEX9 1081 aaKnown RBP5.27□□□□□ -1.57
VPS41-212ENST00000482217 TSR2Q969E8 191 aaKnown RBP5.27□□□□□ -1.57
VPS41-212ENST00000482217 MISP3Q96FF7 219 aa5.27□□□□□ -1.57
VPS41-212ENST00000482217 HEXIM2Q96MH2 286 aaKnown RBP5.27□□□□□ -1.57
VPS41-212ENST00000482217 LRRC4CQ9HCJ2 640 aa5.27□□□□□ -1.57
VPS41-212ENST00000482217 PRR13Q9NZ81 148 aa5.27□□□□□ -1.57
VPS41-212ENST00000482217 OAS3Q9Y6K5 1087 aaKnown RBP5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 185.1 ms