RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 PKN1Q16512 942 aa11.73□□□□□ -0.53
USP39-215ENST00000481409 MCTP2Q6DN12 878 aa11.73□□□□□ -0.53
USP39-215ENST00000481409 FASTKD5Q7L8L6 764 aaKnown RBP11.73□□□□□ -0.53
USP39-215ENST00000481409 ADGRF4Q8IZF3 695 aa11.73□□□□□ -0.53
USP39-215ENST00000481409 PRPF38AQ8NAV1 312 aaKnown RBP11.73□□□□□ -0.53
USP39-215ENST00000481409 SLC10A4Q96EP9 437 aa11.73□□□□□ -0.53
USP39-215ENST00000481409 BARHL2Q9NY43 387 aa11.73□□□□□ -0.53
USP39-215ENST00000481409 MTMR6Q9Y217 621 aa11.73□□□□□ -0.53
USP39-215ENST00000481409 FRMPD2Q68DX3 1309 aaPredicted RBP11.72□□□□□ -0.53
USP39-215ENST00000481409 TMEM232C9JQI7 657 aa11.72□□□□□ -0.53
USP39-215ENST00000481409 RAD21O60216 631 aa11.72□□□□□ -0.53
USP39-215ENST00000481409 TOMM70O94826 608 aa11.72□□□□□ -0.53
USP39-215ENST00000481409 CELF2O95319 508 aaKnown RBP11.72□□□□□ -0.53
USP39-215ENST00000481409 F13A1P00488 732 aa11.72□□□□□ -0.53
USP39-215ENST00000481409 GOLGA8HP0CJ92 632 aa11.72□□□□□ -0.53
USP39-215ENST00000481409 ZBTB48P10074 688 aaPredicted RBP11.72□□□□□ -0.53
USP39-215ENST00000481409 GNA11P29992 359 aa11.72□□□□□ -0.53
USP39-215ENST00000481409 FSTL1Q12841 308 aa11.72□□□□□ -0.53
USP39-215ENST00000481409 PABPC4Q13310 644 aaKnown RBP eCLIP11.72□□□□□ -0.53
USP39-215ENST00000481409 SYDE2Q5VT97 1194 aa11.72□□□□□ -0.53
USP39-215ENST00000481409 KCTD1Q719H9 257 aa11.72□□□□□ -0.53
USP39-215ENST00000481409 BRAPQ7Z569 592 aa11.72□□□□□ -0.53
USP39-215ENST00000481409 CCDC82Q8N4S0 544 aa11.72□□□□□ -0.53
USP39-215ENST00000481409 BICD2Q8TD16 824 aa11.72□□□□□ -0.53
USP39-215ENST00000481409 ZNF526Q8TF50 670 aaPredicted RBP11.72□□□□□ -0.53
USP39-215ENST00000481409 FOXP1Q9H334 677 aaPredicted RBP11.72□□□□□ -0.53
USP39-215ENST00000481409 JMJD4Q9H9V9 463 aa11.72□□□□□ -0.53
USP39-215ENST00000481409 GPCPD1Q9NPB8 672 aa11.72□□□□□ -0.53
USP39-215ENST00000481409 EMILIN3Q9NT22 766 aa11.72□□□□□ -0.53
USP39-215ENST00000481409 MTMR7Q9Y216 660 aa11.72□□□□□ -0.53
USP39-215ENST00000481409 PASKQ96RG2 1323 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 A0A0G2JLL6 359 aaPredicted RBP11.71□□□□□ -0.53
USP39-215ENST00000481409 VPS37CA5D8V6 355 aaPredicted RBP11.71□□□□□ -0.53
USP39-215ENST00000481409 USP17L15C9J2P7 530 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 USP17L13C9JLJ4 530 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 USP17L11C9JVI0 530 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 USP17L18D6R9N7 530 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 USP17L22D6RA61 530 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 USP17L17D6RBQ6 530 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 USP17L19D6RCP7 530 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 USP17L20D6RJB6 530 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 KIF3CO14782 793 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 MMP1P03956 469 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 VCAM1P19320 739 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 PTMSP20962 102 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 HOXA7P31268 230 aaPredicted RBP11.71□□□□□ -0.53
USP39-215ENST00000481409 USP17L24Q0WX57 530 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 IKQ13123 557 aaPredicted RBP11.71□□□□□ -0.53
USP39-215ENST00000481409 SNAPC2Q13487 334 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 PRKG1Q13976 671 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 FAM83BQ5T0W9 1011 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 KRT40Q6A162 431 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 PRRT2Q7Z6L0 340 aaPredicted RBP11.71□□□□□ -0.53
USP39-215ENST00000481409 CMTR1Q8N1G2 835 aaKnown RBP11.71□□□□□ -0.53
USP39-215ENST00000481409 SAMD3Q8N6K7 520 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 DAGLBQ8NCG7 672 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 GTF3C2Q8WUA4 911 aaPredicted RBP11.71□□□□□ -0.53
USP39-215ENST00000481409 HHIPL1Q96JK4 782 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 GBP4Q96PP9 640 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 SLF1Q9BQI6 1058 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 PHF20Q9BVI0 1012 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 AMNQ9BXJ7 453 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 UBA5Q9GZZ9 404 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 RANBP17Q9H2T7 1088 aaKnown RBP11.71□□□□□ -0.53
USP39-215ENST00000481409 HOXC10Q9NYD6 342 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 SLC45A1Q9Y2W3 748 aa11.71□□□□□ -0.53
USP39-215ENST00000481409 LOC285556D6RIA3 1793 aa11.71□□□□□ -0.54
USP39-215ENST00000481409 PTPRFP10586 1907 aa11.7□□□□□ -0.54
USP39-215ENST00000481409 TRIM75PA6NK02 468 aa11.7□□□□□ -0.54
USP39-215ENST00000481409 TRAF5O00463 557 aa11.7□□□□□ -0.54
USP39-215ENST00000481409 U2AF2P26368 475 aaKnown RBP eCLIP11.7□□□□□ -0.54
USP39-215ENST00000481409 GTF2A2P52657 109 aa11.7□□□□□ -0.54
USP39-215ENST00000481409 OAZ1P54368 228 aa11.7□□□□□ -0.54
USP39-215ENST00000481409 TTBK2Q6IQ55 1244 aa11.7□□□□□ -0.54
USP39-215ENST00000481409 CATSPERGQ6ZRH7 1159 aa11.7□□□□□ -0.54
USP39-215ENST00000481409 SPICE1Q8N0Z3 855 aa11.7□□□□□ -0.54
USP39-215ENST00000481409 MB21D1Q8N884 522 aa11.7□□□□□ -0.54
USP39-215ENST00000481409 OPTNQ96CV9 577 aa11.7□□□□□ -0.54
USP39-215ENST00000481409 ZMYND12Q9H0C1 365 aa11.7□□□□□ -0.54
USP39-215ENST00000481409 ZNF408Q9H9D4 720 aa11.7□□□□□ -0.54
USP39-215ENST00000481409 ELP3Q9H9T3 547 aa11.7□□□□□ -0.54
USP39-215ENST00000481409 C6orf50Q9HD87 102 aa11.7□□□□□ -0.54
USP39-215ENST00000481409 PPP1R9AQ9ULJ8 1098 aa11.7□□□□□ -0.54
USP39-215ENST00000481409 PRR12Q9ULL5 1215 aa11.7□□□□□ -0.54
USP39-215ENST00000481409 ISY1Q9ULR0 285 aaKnown RBP11.7□□□□□ -0.54
USP39-215ENST00000481409 ZDHHC9Q9Y397 364 aa11.7□□□□□ -0.54
USP39-215ENST00000481409 UBE2Q2LH0YL09 131 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 GOLGA6L22H0YM25 854 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 STXBP3O00186 592 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 IRF6O14896 467 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 CETPP11597 493 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 KRT2P35908 639 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 HMGCS2P54868 508 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 NLRP5P59047 1200 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 GNL2Q13823 731 aaKnown RBP11.69□□□□□ -0.54
USP39-215ENST00000481409 COG2Q14746 738 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 ZYXQ15942 572 aaKnown RBP11.69□□□□□ -0.54
USP39-215ENST00000481409 CDC37Q16543 378 aaPredicted RBP11.69□□□□□ -0.54
USP39-215ENST00000481409 CSPP1Q1MSJ5 1256 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 SLC35G1Q2M3R5 365 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms