RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-213ENST00000480658 DOCK3Q8IZD9 2030 aa13.53□□□□□ -0.24
CCM2-213ENST00000480658 KBTBD13C9JR72 458 aa13.53□□□□□ -0.24
CCM2-213ENST00000480658 IGHA2P01877 340 aa13.53□□□□□ -0.24
CCM2-213ENST00000480658 FGRP09769 529 aa13.53□□□□□ -0.24
CCM2-213ENST00000480658 COL6A1P12109 1028 aa13.53□□□□□ -0.24
CCM2-213ENST00000480658 IKQ13123 557 aaPredicted RBP13.53□□□□□ -0.24
CCM2-213ENST00000480658 SLFN13Q68D06 897 aa13.53□□□□□ -0.24
CCM2-213ENST00000480658 STK11IPQ8N1F8 1099 aa13.53□□□□□ -0.24
CCM2-213ENST00000480658 NPLOC4Q8TAT6 608 aa13.53□□□□□ -0.24
CCM2-213ENST00000480658 DDX11Q96FC9 970 aa13.53□□□□□ -0.24
CCM2-213ENST00000480658 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.53□□□□□ -0.24
CCM2-213ENST00000480658 MYH4Q9Y623 1939 aa13.52□□□□□ -0.24
CCM2-213ENST00000480658 RANBP6O60518 1105 aaKnown RBP13.52□□□□□ -0.25
CCM2-213ENST00000480658 HSPD1P10809 573 aaKnown RBP13.52□□□□□ -0.25
CCM2-213ENST00000480658 RARBP10826 455 aa13.52□□□□□ -0.25
CCM2-213ENST00000480658 CYP2C19P33261 490 aa13.52□□□□□ -0.25
CCM2-213ENST00000480658 B4GALNT3Q6L9W6 998 aa13.52□□□□□ -0.25
CCM2-213ENST00000480658 CHRDL2Q6WN34 429 aa13.52□□□□□ -0.25
CCM2-213ENST00000480658 MFSD6Q6ZSS7 791 aa13.52□□□□□ -0.25
CCM2-213ENST00000480658 LRRC47Q8N1G4 583 aaKnown RBP13.52□□□□□ -0.25
CCM2-213ENST00000480658 REPS2Q8NFH8 660 aa13.52□□□□□ -0.25
CCM2-213ENST00000480658 DCAF4Q8WV16 495 aa13.52□□□□□ -0.25
CCM2-213ENST00000480658 STAG1Q8WVM7 1258 aa13.52□□□□□ -0.25
CCM2-213ENST00000480658 KIFC2Q96AC6 838 aa13.52□□□□□ -0.25
CCM2-213ENST00000480658 TTC14Q96N46 770 aa13.52□□□□□ -0.25
CCM2-213ENST00000480658 TINF2Q9BSI4 451 aa13.52□□□□□ -0.25
CCM2-213ENST00000480658 TOMM22Q9NS69 142 aa13.52□□□□□ -0.25
CCM2-213ENST00000480658 TCP11L1Q9NUJ3 509 aa13.52□□□□□ -0.25
CCM2-213ENST00000480658 FBXO28Q9NVF7 368 aa13.52□□□□□ -0.25
CCM2-213ENST00000480658 FLRT1Q9NZU1 646 aa13.52□□□□□ -0.25
CCM2-213ENST00000480658 PRKAG2Q9UGJ0 569 aa13.52□□□□□ -0.25
CCM2-213ENST00000480658 CTNNA3Q9UI47 895 aa13.52□□□□□ -0.25
CCM2-213ENST00000480658 ISY1Q9ULR0 285 aaKnown RBP13.52□□□□□ -0.25
CCM2-213ENST00000480658 COLQQ9Y215 455 aaPredicted RBP13.52□□□□□ -0.25
CCM2-213ENST00000480658 PFASO15067 1338 aa13.52□□□□□ -0.25
CCM2-213ENST00000480658 FRMPD3Q5JV73 1810 aa13.51□□□□□ -0.25
CCM2-213ENST00000480658 A0A0D9SFI3 127 aa13.51□□□□□ -0.25
CCM2-213ENST00000480658 SMIM22K7EJ46 135 aa13.51□□□□□ -0.25
CCM2-213ENST00000480658 FGAP02671 866 aa13.51□□□□□ -0.25
CCM2-213ENST00000480658 AKR1A1P14550 325 aa13.51□□□□□ -0.25
CCM2-213ENST00000480658 SDSP20132 328 aa13.51□□□□□ -0.25
CCM2-213ENST00000480658 BMP8BP34820 402 aa13.51□□□□□ -0.25
CCM2-213ENST00000480658 FAM47AQ5JRC9 791 aa13.51□□□□□ -0.25
CCM2-213ENST00000480658 RNF180Q86T96 592 aa13.51□□□□□ -0.25
CCM2-213ENST00000480658 ANKRD35Q8N283 1001 aa13.51□□□□□ -0.25
CCM2-213ENST00000480658 DIS3LQ8TF46 1054 aaKnown RBP13.51□□□□□ -0.25
CCM2-213ENST00000480658 ESR2Q92731 530 aa13.51□□□□□ -0.25
CCM2-213ENST00000480658 RAD50Q92878 1312 aa13.5□□□□□ -0.25
CCM2-213ENST00000480658 TMEM232C9JQI7 657 aa13.5□□□□□ -0.25
CCM2-213ENST00000480658 ZNF213O14771 459 aa13.5□□□□□ -0.25
CCM2-213ENST00000480658 COBLO75128 1261 aa13.5□□□□□ -0.25
CCM2-213ENST00000480658 TOP1P11387 765 aaKnown RBP13.5□□□□□ -0.25
CCM2-213ENST00000480658 NOVP48745 357 aa13.5□□□□□ -0.25
CCM2-213ENST00000480658 NMIQ13287 307 aaPredicted RBP13.5□□□□□ -0.25
CCM2-213ENST00000480658 ZNF792Q3KQV3 632 aa13.5□□□□□ -0.25
CCM2-213ENST00000480658 AKNAD1Q5T1N1 836 aa13.5□□□□□ -0.25
CCM2-213ENST00000480658 MAMDC4Q6UXC1 1216 aa13.5□□□□□ -0.25
CCM2-213ENST00000480658 CCDC129Q6ZRS4 1044 aa13.5□□□□□ -0.25
CCM2-213ENST00000480658 IQCA1Q86XH1 822 aa13.5□□□□□ -0.25
CCM2-213ENST00000480658 PLEKHM2Q8IWE5 1019 aa13.5□□□□□ -0.25
CCM2-213ENST00000480658 C7orf61Q8IZ16 206 aa13.5□□□□□ -0.25
CCM2-213ENST00000480658 EXOC6Q8TAG9 804 aa13.5□□□□□ -0.25
CCM2-213ENST00000480658 FAM227BQ96M60 508 aa13.5□□□□□ -0.25
CCM2-213ENST00000480658 MPHOSPH6Q99547 160 aaKnown RBP13.5□□□□□ -0.25
CCM2-213ENST00000480658 NUP88Q99567 741 aaPredicted RBP13.5□□□□□ -0.25
CCM2-213ENST00000480658 ACAD9Q9H845 621 aa13.5□□□□□ -0.25
CCM2-213ENST00000480658 COL11A1P12107 1806 aaPredicted RBP13.5□□□□□ -0.25
CCM2-213ENST00000480658 LOC102724159A0A0B4J2E5 919 aa13.49□□□□□ -0.25
CCM2-213ENST00000480658 MNX1P50219 401 aaPredicted RBP13.49□□□□□ -0.25
CCM2-213ENST00000480658 PWP2Q15269 919 aaKnown RBP13.49□□□□□ -0.25
CCM2-213ENST00000480658 IMMTQ16891 758 aaKnown RBP13.49□□□□□ -0.25
CCM2-213ENST00000480658 VPS53Q5VIR6 699 aa13.49□□□□□ -0.25
CCM2-213ENST00000480658 CPXCR1Q8N123 301 aa13.49□□□□□ -0.25
CCM2-213ENST00000480658 RUFY2Q8WXA3 655 aa13.49□□□□□ -0.25
CCM2-213ENST00000480658 DSCC1Q9BVC3 393 aa13.49□□□□□ -0.25
CCM2-213ENST00000480658 MAF1Q9H063 256 aa13.49□□□□□ -0.25
CCM2-213ENST00000480658 CNNM2Q9H8M5 875 aa13.49□□□□□ -0.25
CCM2-213ENST00000480658 SPC25Q9HBM1 224 aa13.49□□□□□ -0.25
CCM2-213ENST00000480658 FOXP2O15409 715 aa13.48□□□□□ -0.25
CCM2-213ENST00000480658 KCNA4P22459 653 aa13.48□□□□□ -0.25
CCM2-213ENST00000480658 CTDSPL2Q05D32 466 aa13.48□□□□□ -0.25
CCM2-213ENST00000480658 CCDC96Q2M329 555 aa13.48□□□□□ -0.25
CCM2-213ENST00000480658 GPATCH4Q5T3I0 446 aaKnown RBP13.48□□□□□ -0.25
CCM2-213ENST00000480658 C1orf53Q5VUE5 145 aa13.48□□□□□ -0.25
CCM2-213ENST00000480658 DGKHQ86XP1 1220 aa13.48□□□□□ -0.25
CCM2-213ENST00000480658 SENP6Q9GZR1 1112 aaPredicted RBP13.48□□□□□ -0.25
CCM2-213ENST00000480658 ABHD16BQ9H3Z7 469 aa13.48□□□□□ -0.25
CCM2-213ENST00000480658 XPNPEP3Q9NQH7 507 aa13.48□□□□□ -0.25
CCM2-213ENST00000480658 SUPT16HQ9Y5B9 1047 aaKnown RBP13.48□□□□□ -0.25
CCM2-213ENST00000480658 DNAJC25-GNG10A0A024R161 153 aa13.47□□□□□ -0.25
CCM2-213ENST00000480658 ASB14A6NK59 587 aa13.47□□□□□ -0.25
CCM2-213ENST00000480658 IGHDP01880 384 aa13.47□□□□□ -0.25
CCM2-213ENST00000480658 MCCP23508 829 aa13.47□□□□□ -0.25
CCM2-213ENST00000480658 RRP12Q5JTH9 1297 aaKnown RBP13.47□□□□□ -0.25
CCM2-213ENST00000480658 CWC27Q6UX04 472 aaKnown RBP13.47□□□□□ -0.25
CCM2-213ENST00000480658 NUP133Q8WUM0 1156 aa13.47□□□□□ -0.25
CCM2-213ENST00000480658 LBHD1Q9BQE6 289 aaPredicted RBP13.47□□□□□ -0.25
CCM2-213ENST00000480658 TSEN34Q9BSV6 310 aaKnown RBP13.47□□□□□ -0.25
CCM2-213ENST00000480658 KRT23Q9C075 422 aa13.47□□□□□ -0.25
CCM2-213ENST00000480658 PRO3102Q9H379 93 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms