RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 CEP57Q86XR8 500 aa20.98■□□□□ 0.95
CCDC88B-207ENST00000479965 IFNL3Q8IZI9 196 aa20.98■□□□□ 0.95
CCDC88B-207ENST00000479965 FANCBQ8NB91 859 aa20.98■□□□□ 0.95
CCDC88B-207ENST00000479965 IFT81Q8WYA0 676 aa20.98■□□□□ 0.95
CCDC88B-207ENST00000479965 MAGEC2Q9UBF1 373 aaPredicted RBP20.98■□□□□ 0.95
CCDC88B-207ENST00000479965 AFDNP55196 1824 aaKnown RBP20.97■□□□□ 0.95
CCDC88B-207ENST00000479965 MBD4O95243 580 aa20.97■□□□□ 0.95
CCDC88B-207ENST00000479965 KRT2P35908 639 aa20.97■□□□□ 0.95
CCDC88B-207ENST00000479965 IFIT5Q13325 482 aaKnown RBP20.97■□□□□ 0.95
CCDC88B-207ENST00000479965 NFRKBQ6P4R8 1299 aa20.97■□□□□ 0.95
CCDC88B-207ENST00000479965 IFNL2Q8IZJ0 200 aa20.97■□□□□ 0.95
CCDC88B-207ENST00000479965 RNPC3Q96LT9 517 aaKnown RBP20.97■□□□□ 0.95
CCDC88B-207ENST00000479965 LDHAL6AQ6ZMR3 332 aa20.97■□□□□ 0.95
CCDC88B-207ENST00000479965 CREG2Q8IUH2 290 aa20.97■□□□□ 0.95
CCDC88B-207ENST00000479965 DNAJC7Q99615 494 aa20.97■□□□□ 0.95
CCDC88B-207ENST00000479965 MLXIPQ9HAP2 919 aa20.97■□□□□ 0.95
CCDC88B-207ENST00000479965 EPB41L4AQ9HCS5 686 aaPredicted RBP20.97■□□□□ 0.95
CCDC88B-207ENST00000479965 UBR1Q8IWV7 1749 aa20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 ESYT3A0FGR9 886 aa20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 PRKAB2O43741 272 aa20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 SCP2P22307 547 aa20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 GPTP24298 496 aa20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 EPHB4P54760 987 aa20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 SPA17Q15506 151 aa20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 AKNAD1Q5T1N1 836 aa20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 CCDC43Q96MW1 224 aaKnown RBP20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 STRBPQ96SI9 672 aaKnown RBP20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 CAPN11Q9UMQ6 739 aa20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 CAPN6Q9Y6Q1 641 aa20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 NFAT5O94916 1531 aa20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 ECM2O94769 699 aaPredicted RBP20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 MOCS3O95396 460 aa20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 FNTAP49354 379 aa20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 PMS1P54277 932 aaKnown RBP20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 ZNF654Q8IZM8 581 aa20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 MTRQ99707 1265 aa20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 SNX12Q9UMY4 172 aa20.96■□□□□ 0.95
CCDC88B-207ENST00000479965 ZPR1O75312 459 aa20.95■□□□□ 0.95
CCDC88B-207ENST00000479965 RPN1P04843 607 aaKnown RBP20.95■□□□□ 0.95
CCDC88B-207ENST00000479965 LSP1P33241 339 aa20.95■□□□□ 0.95
CCDC88B-207ENST00000479965 MCM7P33993 719 aa20.95■□□□□ 0.95
CCDC88B-207ENST00000479965 NAA35Q5VZE5 725 aa20.95■□□□□ 0.95
CCDC88B-207ENST00000479965 MICALCLQ6ZW33 695 aa20.95■□□□□ 0.95
CCDC88B-207ENST00000479965 IRF2BP1Q8IU81 584 aa20.95■□□□□ 0.95
CCDC88B-207ENST00000479965 ANKRD13CQ8N6S4 541 aa20.95■□□□□ 0.95
CCDC88B-207ENST00000479965 FERMT2Q96AC1 680 aa20.95■□□□□ 0.95
CCDC88B-207ENST00000479965 CCDC42Q96M95 316 aa20.95■□□□□ 0.95
CCDC88B-207ENST00000479965 PLIN2Q99541 437 aa20.95■□□□□ 0.95
CCDC88B-207ENST00000479965 UBAC1Q9BSL1 405 aa20.95■□□□□ 0.95
CCDC88B-207ENST00000479965 CNNM1Q9NRU3 951 aa20.95■□□□□ 0.95
CCDC88B-207ENST00000479965 LGALS16A8MUM7 142 aa20.95■□□□□ 0.94
CCDC88B-207ENST00000479965 GUCY2FP51841 1108 aa20.95■□□□□ 0.94
CCDC88B-207ENST00000479965 ZNF658Q5TYW1 1059 aaPredicted RBP20.95■□□□□ 0.94
CCDC88B-207ENST00000479965 C8orf74Q6P047 294 aa20.95■□□□□ 0.94
CCDC88B-207ENST00000479965 ZKSCAN4Q969J2 545 aaPredicted RBP20.95■□□□□ 0.94
CCDC88B-207ENST00000479965 V9GY48 417 aaPredicted RBP20.95■□□□□ 0.94
CCDC88B-207ENST00000479965 C5P01031 1676 aa20.95■□□□□ 0.94
CCDC88B-207ENST00000479965 CLGNO14967 610 aa20.95■□□□□ 0.94
CCDC88B-207ENST00000479965 PLEKP08567 350 aaPredicted RBP20.95■□□□□ 0.94
CCDC88B-207ENST00000479965 CDR1P51861 262 aa20.95■□□□□ 0.94
CCDC88B-207ENST00000479965 NAP1L1P55209 391 aaKnown RBP20.95■□□□□ 0.94
CCDC88B-207ENST00000479965 SF3B2Q13435 895 aaKnown RBP20.95■□□□□ 0.94
CCDC88B-207ENST00000479965 TTC38Q5R3I4 469 aa20.95■□□□□ 0.94
CCDC88B-207ENST00000479965 CFAP58Q5T655 872 aa20.95■□□□□ 0.94
CCDC88B-207ENST00000479965 ANKLE2Q86XL3 938 aa20.95■□□□□ 0.94
CCDC88B-207ENST00000479965 SHISA4Q96DD7 197 aa20.95■□□□□ 0.94
CCDC88B-207ENST00000479965 STIM2Q9P246 746 aa20.95■□□□□ 0.94
CCDC88B-207ENST00000479965 ANO9A1A5B4 782 aa20.94■□□□□ 0.94
CCDC88B-207ENST00000479965 NCK2O43639 380 aa20.94■□□□□ 0.94
CCDC88B-207ENST00000479965 TACC1O75410 805 aa20.94■□□□□ 0.94
CCDC88B-207ENST00000479965 HPDP32754 393 aaPredicted RBP20.94■□□□□ 0.94
CCDC88B-207ENST00000479965 NF2P35240 595 aa20.94■□□□□ 0.94
CCDC88B-207ENST00000479965 TBC1D8BQ0IIM8 1120 aa20.94■□□□□ 0.94
CCDC88B-207ENST00000479965 MAGEB6Q8N7X4 407 aa20.94■□□□□ 0.94
CCDC88B-207ENST00000479965 N4BP2L2Q92802 583 aaPredicted RBP20.94■□□□□ 0.94
CCDC88B-207ENST00000479965 KRT23Q9C075 422 aa20.94■□□□□ 0.94
CCDC88B-207ENST00000479965 H7C1D1 291 aa20.94■□□□□ 0.94
CCDC88B-207ENST00000479965 SYNE4Q8N205 404 aa20.94■□□□□ 0.94
CCDC88B-207ENST00000479965 PPANQ9NQ55 473 aaKnown RBP20.94■□□□□ 0.94
CCDC88B-207ENST00000479965 ATP2C2O75185 946 aa20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 ORAI2Q96SN7 254 aa20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 CNNM2Q9H8M5 875 aa20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 KLC4Q9NSK0 619 aa20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 NFU1Q9UMS0 254 aa20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 E7EVH7 732 aa20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 CHUKO15111 745 aa20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 GTPBP6O43824 516 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 FSBPO95073 299 aa20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 PHKA1P46020 1223 aa20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 VAV2P52735 878 aa20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 HDLBPQ00341 1268 aaKnown RBP20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 TYW1BQ6NUM6 668 aa20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 MMGT1Q8N4V1 131 aa20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 ZNF473Q8WTR7 871 aaKnown RBP20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 ZSCAN5CA6NGD5 496 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 NUTM2BA6NNL0 878 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 NUTM2EB1AL46 878 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 PATL2C9JE40 543 aaKnown RBP20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 PAFAH1B1P43034 410 aa20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 SKOR1P84550 965 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms