RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 ANKRD20A4Q4UJ75 823 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 ANKRD20A8PQ5CZ79 823 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 ANKRD20A2Q5SQ80 823 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 ANKRD20A1Q5TYW2 823 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 SULF1Q8IWU6 871 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 ZNF445P59923 1031 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 PPARDQ03181 441 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 TMED1Q13445 227 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 C8orf34Q49A92 452 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 CCDC13Q8IYE1 715 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 TTC38Q5R3I4 469 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 CASC4Q6P4E1 433 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 SPDL1Q96EA4 605 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 MRFAP1L1Q96HT8 127 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 CBX8Q9HC52 389 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 DNM3Q9UQ16 869 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 SCINQ9Y6U3 715 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 KDM5DQ9BY66 1539 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 TXKP42681 527 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 MAP3K7CLP57077 242 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 CTDSPL2Q05D32 466 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 DMTNQ08495 405 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 ARHGEF6Q15052 776 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 HAUS2Q9NVX0 235 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 DDX39AO00148 427 aaKnown RBP9.7□□□□□ -0.86
SYNE1-224ENST00000478916 CFBP00751 764 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 CCDC89Q8N998 374 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 USP26Q9BXU7 913 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 EFCC1Q9HA90 598 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 MAN1A1P33908 653 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 NLRP12P59046 1061 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 PPP2R5CQ13362 524 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 CALCRLQ16602 461 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 OTUD7BQ6GQQ9 843 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 PEX26Q7Z412 305 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 CLSTN2Q9H4D0 955 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 VPS37BQ9H9H4 285 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 SAR1BQ9Y6B6 198 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 SLC12A2P55011 1212 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 PAK1Q13153 545 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 MLKLQ8NB16 471 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 ZAP70P43403 619 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 BAG5Q9UL15 447 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 NLRP1Q9C000 1473 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 MAGEA1P43355 309 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 OTUD6AQ7L8S5 288 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 ZBTB38Q8NAP3 1195 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-224ENST00000478916 LRWD1Q9UFC0 647 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 KIF24Q5T7B8 1368 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 LTKP29376 864 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 PPP2R5EQ16537 467 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 TMC4Q7Z404 712 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 SNX29Q8TEQ0 813 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 SCOCQ9UIL1 159 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 ARHGEF5Q12774 1597 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 FLOT1O75955 427 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 PPARAQ07869 468 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 ANO1Q5XXA6 986 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 NXNQ6DKJ4 435 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 CSGALNACT2Q8N6G5 542 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 LRGUKQ96M69 825 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 NACA2Q9H009 215 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 TNNQ9UQP3 1299 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 UGGT1Q9NYU2 1555 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 PPP2R5DQ14738 602 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 SPOUT1Q5T280 376 aaKnown RBP9.69□□□□□ -0.86
SYNE1-224ENST00000478916 WDR70Q9NW82 654 aa9.69□□□□□ -0.86
SYNE1-224ENST00000478916 TFAP4Q01664 338 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 REXO1Q8N1G1 1221 aaKnown RBP9.68□□□□□ -0.86
SYNE1-224ENST00000478916 C17orf53Q8N3J3 647 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-224ENST00000478916 KRT12Q99456 494 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 DSCC1Q9BVC3 393 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 NUCKS1Q9H1E3 243 aaKnown RBP9.68□□□□□ -0.86
SYNE1-224ENST00000478916 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.68□□□□□ -0.86
SYNE1-224ENST00000478916 EFCAB8A8MWE9 144 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 ATP1A2P50993 1020 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 GUCY2FP51841 1108 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 BEND3Q5T5X7 828 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 CTTNBP2NLQ9P2B4 639 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 INSRP06213 1382 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 SUN1O94901 812 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 TTC4O95801 387 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 PALM2Q8IXS6 379 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 FBXO41Q8TF61 875 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 IQCDQ96DY2 449 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 RRP15Q9Y3B9 282 aaKnown RBP9.68□□□□□ -0.86
SYNE1-224ENST00000478916 FAM135BQ49AJ0 1406 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 P4HA1P13674 534 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 ARHGEF16Q5VV41 709 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 CCDC125Q86Z20 511 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 DIS3L2Q8IYB7 885 aaKnown RBP9.68□□□□□ -0.86
SYNE1-224ENST00000478916 PAGR1Q9BTK6 254 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 PTPRTO14522 1441 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 CUTAO60888 179 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 GABPAQ06546 454 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 EPS15L1Q9UBC2 864 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 KDM5CP41229 1560 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 GOLGA8QA0A0J9YX86 632 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 GOLGA8OA6NCC3 632 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 GOLGA8NF8WBI6 632 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms