RNA–Protein interactions for RNA: ENST00000477649.1

VMA21-203, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

TSL 3

Gene VMA21, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-203ENST00000477649 RIOX1Q9H6W3 641 aa9.08□□□□□ -0.96
VMA21-203ENST00000477649 C6orf50Q9HD87 102 aa9.08□□□□□ -0.96
VMA21-203ENST00000477649 CABP5Q9NP86 173 aa9.08□□□□□ -0.96
VMA21-203ENST00000477649 DDX4Q9NQI0 724 aaKnown RBP9.08□□□□□ -0.96
VMA21-203ENST00000477649 KIAA1468Q9P260 1216 aa9.08□□□□□ -0.96
VMA21-203ENST00000477649 KIF13BQ9NQT8 1826 aa9.08□□□□□ -0.96
VMA21-203ENST00000477649 LTBP3Q9NS15 1303 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 CCDC194A0A1B0GVG4 234 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 MYO1BO43795 1136 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 PDHBP11177 359 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 RPS12P25398 132 aaKnown RBP9.07□□□□□ -0.96
VMA21-203ENST00000477649 SHMT1P34896 483 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 TPM4P67936 248 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 SEMA3FQ13275 785 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 DHX8Q14562 1220 aaKnown RBP9.07□□□□□ -0.96
VMA21-203ENST00000477649 TNIP1Q15025 636 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 DLGAP5Q15398 846 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 CAMK4Q16566 473 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 CFAP100Q494V2 611 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 CERKLQ49MI3 558 aaPredicted RBP9.07□□□□□ -0.96
VMA21-203ENST00000477649 CT47A1Q5JQC4 288 aaPredicted RBP9.07□□□□□ -0.96
VMA21-203ENST00000477649 TTC38Q5R3I4 469 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 VARS2Q5ST30 1063 aaKnown RBP9.07□□□□□ -0.96
VMA21-203ENST00000477649 KRT25Q7Z3Z0 450 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 FAM83AQ86UY5 434 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 CMTR1Q8N1G2 835 aaKnown RBP9.07□□□□□ -0.96
VMA21-203ENST00000477649 FAM43AQ8N2R8 423 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 RNF214Q8ND24 703 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 DCAF4Q8WV16 495 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 JDP2Q8WYK2 163 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 GMLQ99445 158 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 NAP1L4Q99733 375 aaKnown RBP9.07□□□□□ -0.96
VMA21-203ENST00000477649 GINM1Q9NU53 330 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 CCDC39Q9UFE4 941 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 FBXO2Q9UK22 296 aaPredicted RBP9.07□□□□□ -0.96
VMA21-203ENST00000477649 KCNH3Q9ULD8 1083 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 MRVI1Q9Y6F6 885 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 MYH1P12882 1939 aa9.07□□□□□ -0.96
VMA21-203ENST00000477649 CDK5RAP2Q96SN8 1893 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 A0A1B0GVL5 298 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 YDJCA8MPS7 323 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 GOLGA6L6A8MZA4 724 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 GOLGA6L19H0YKK7 550 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 STXBP3O00186 592 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 TBC1D12O60347 775 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 AKR1B1P15121 316 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 MARCKSP29966 332 aaPredicted RBP9.06□□□□□ -0.96
VMA21-203ENST00000477649 ZNF165P49910 485 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 ATP2C1P98194 919 aaPredicted RBP9.06□□□□□ -0.96
VMA21-203ENST00000477649 ZNF543Q08ER8 600 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 NR5A1Q13285 461 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 NPY5RQ15761 445 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 SHC4Q6S5L8 630 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.06□□□□□ -0.96
VMA21-203ENST00000477649 ZSCAN29Q8IWY8 852 aaPredicted RBP9.06□□□□□ -0.96
VMA21-203ENST00000477649 CKAP2LQ8IYA6 745 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 ZNF687Q8N1G0 1237 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 ZNF710Q8N1W2 664 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 TRIML1Q8N9V2 468 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 GMCL1P1Q8NEA9 526 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 FAM151AQ8WW52 585 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 MXD3Q9BW11 206 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 TAOK3Q9H2K8 898 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 CLIP2Q9UDT6 1046 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 FAM198AQ9UFP1 575 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 DACH1Q9UI36 760 aa9.06□□□□□ -0.96
VMA21-203ENST00000477649 PNMA6FA0A0J9YX94 578 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 SMTNL1A8MU46 457 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 M0R2N6 131 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 CYTH3O43739 400 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 LONP1P36776 959 aaKnown RBP9.05□□□□□ -0.96
VMA21-203ENST00000477649 TXLNAP40222 546 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 PRPHP41219 470 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 TNNI2P48788 182 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 NAPAP54920 295 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 NFIAQ12857 509 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 SLC4A8Q2Y0W8 1093 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 ANO6Q4KMQ2 910 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 RBM26Q5T8P6 1007 aaKnown RBP9.05□□□□□ -0.96
VMA21-203ENST00000477649 KRBA2Q6ZNG9 492 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 HEATR3Q7Z4Q2 680 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 STAG2Q8N3U4 1231 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 CNNM3Q8NE01 707 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 OXER1Q8TDS5 423 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 GMCL1Q96IK5 515 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 GTPBP4Q9BZE4 634 aaKnown RBP9.05□□□□□ -0.96
VMA21-203ENST00000477649 TUBE1Q9UJT0 475 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 PCDHB6Q9Y5E3 794 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 PSME4Q14997 1843 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 ECM29Q5VYK3 1845 aa9.05□□□□□ -0.96
VMA21-203ENST00000477649 UTRNP46939 3433 aa9.04□□□□□ -0.96
VMA21-203ENST00000477649 BECN2A8MW95 431 aa9.04□□□□□ -0.96
VMA21-203ENST00000477649 UBE2Q2LH0YL09 131 aa9.04□□□□□ -0.96
VMA21-203ENST00000477649 PSMD14O00487 310 aa9.04□□□□□ -0.96
VMA21-203ENST00000477649 MPHOSPH10O00566 681 aaKnown RBP9.04□□□□□ -0.96
VMA21-203ENST00000477649 SMC2O95347 1197 aa9.04□□□□□ -0.96
VMA21-203ENST00000477649 MYL1P05976 194 aa9.04□□□□□ -0.96
VMA21-203ENST00000477649 HOXA7P31268 230 aaPredicted RBP9.04□□□□□ -0.96
VMA21-203ENST00000477649 MRPL12P52815 198 aaKnown RBP9.04□□□□□ -0.96
VMA21-203ENST00000477649 NLRP12P59046 1061 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms