RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 ERICH6Q7L0X2 663 aa9.96□□□□□ -0.82
USP54-211ENST00000474929 ASCL5Q7RTU5 278 aa9.96□□□□□ -0.82
USP54-211ENST00000474929 TEX11Q8IYF3 940 aa9.96□□□□□ -0.82
USP54-211ENST00000474929 PABPC5Q96DU9 382 aaKnown RBP9.96□□□□□ -0.82
USP54-211ENST00000474929 TGS1Q96RS0 853 aaKnown RBP9.96□□□□□ -0.82
USP54-211ENST00000474929 MMP19Q99542 508 aa9.96□□□□□ -0.82
USP54-211ENST00000474929 UPF3AQ9H1J1 476 aaKnown RBP9.96□□□□□ -0.82
USP54-211ENST00000474929 RPAP3Q9H6T3 665 aaPredicted RBP9.96□□□□□ -0.82
USP54-211ENST00000474929 ABCF2Q9UG63 623 aa9.96□□□□□ -0.82
USP54-211ENST00000474929 SIPA1L1O43166 1804 aa9.96□□□□□ -0.82
USP54-211ENST00000474929 MED19A0JLT2 244 aaPredicted RBP9.95□□□□□ -0.82
USP54-211ENST00000474929 GDF11O95390 407 aa9.95□□□□□ -0.82
USP54-211ENST00000474929 GJA9P57773 515 aa9.95□□□□□ -0.82
USP54-211ENST00000474929 TRIM26Q12899 539 aaPredicted RBP9.95□□□□□ -0.82
USP54-211ENST00000474929 TSPYL6Q8N831 410 aa9.95□□□□□ -0.82
USP54-211ENST00000474929 SLC43A3Q8NBI5 491 aa9.95□□□□□ -0.82
USP54-211ENST00000474929 ANKS1AQ92625 1134 aa9.95□□□□□ -0.82
USP54-211ENST00000474929 NKD2Q969F2 451 aaPredicted RBP9.95□□□□□ -0.82
USP54-211ENST00000474929 WNT8AQ9H1J5 351 aa9.95□□□□□ -0.82
USP54-211ENST00000474929 FBXO3Q9UK99 471 aa9.95□□□□□ -0.82
USP54-211ENST00000474929 SIP14410 1827 aa9.94□□□□□ -0.82
USP54-211ENST00000474929 ZEB2O60315 1214 aa9.94□□□□□ -0.82
USP54-211ENST00000474929 KDM4AO75164 1064 aa9.94□□□□□ -0.82
USP54-211ENST00000474929 PLS1Q14651 629 aa9.94□□□□□ -0.82
USP54-211ENST00000474929 PUM1Q14671 1186 aaKnown RBP eCLIP9.94□□□□□ -0.82
USP54-211ENST00000474929 TTLL4Q14679 1199 aa9.94□□□□□ -0.82
USP54-211ENST00000474929 SMAD2Q15796 467 aaKnown RBP9.94□□□□□ -0.82
USP54-211ENST00000474929 ATP2B3Q16720 1220 aa9.94□□□□□ -0.82
USP54-211ENST00000474929 GNASQ5JWF2 1037 aa9.94□□□□□ -0.82
USP54-211ENST00000474929 RNF135Q8IUD6 432 aa9.94□□□□□ -0.82
USP54-211ENST00000474929 LENG1Q96BZ8 264 aaPredicted RBP9.94□□□□□ -0.82
USP54-211ENST00000474929 MRPL38Q96DV4 380 aaKnown RBP9.94□□□□□ -0.82
USP54-211ENST00000474929 SUCLG2Q96I99 432 aa9.94□□□□□ -0.82
USP54-211ENST00000474929 TANGO6Q9C0B7 1094 aa9.94□□□□□ -0.82
USP54-211ENST00000474929 ZHX1Q9UKY1 873 aaPredicted RBP9.94□□□□□ -0.82
USP54-211ENST00000474929 ZFHX4Q86UP3 3567 aa9.93□□□□□ -0.82
USP54-211ENST00000474929 UMODL1Q5DID0 1318 aa9.93□□□□□ -0.82
USP54-211ENST00000474929 SOWAHBA6NEL2 793 aa9.93□□□□□ -0.82
USP54-211ENST00000474929 H3BQ06 376 aaPredicted RBP9.93□□□□□ -0.82
USP54-211ENST00000474929 EYA2O00167 538 aa9.93□□□□□ -0.82
USP54-211ENST00000474929 BAG3O95817 575 aa9.93□□□□□ -0.82
USP54-211ENST00000474929 GH2P01242 217 aa9.93□□□□□ -0.82
USP54-211ENST00000474929 ERVK-21P61565 698 aa9.93□□□□□ -0.82
USP54-211ENST00000474929 NKX3-2P78367 333 aa9.93□□□□□ -0.82
USP54-211ENST00000474929 MECOMQ03112 1051 aa9.93□□□□□ -0.82
USP54-211ENST00000474929 SIGLEC14Q08ET2 396 aa9.93□□□□□ -0.82
USP54-211ENST00000474929 ACAP1Q15027 740 aa9.93□□□□□ -0.82
USP54-211ENST00000474929 CNTNAP3BQ96NU0 1288 aa9.93□□□□□ -0.82
USP54-211ENST00000474929 ZBED2Q9BTP6 218 aa9.93□□□□□ -0.82
USP54-211ENST00000474929 CNTNAP3Q9BZ76 1288 aa9.93□□□□□ -0.82
USP54-211ENST00000474929 SRCIN1Q9C0H9 1055 aa9.93□□□□□ -0.82
USP54-211ENST00000474929 DNAJC18Q9H819 358 aa9.93□□□□□ -0.82
USP54-211ENST00000474929 CABP5Q9NP86 173 aa9.93□□□□□ -0.82
USP54-211ENST00000474929 MYO15AQ9UKN7 3530 aa9.93□□□□□ -0.82
USP54-211ENST00000474929 TANC1Q9C0D5 1861 aa9.92□□□□□ -0.82
USP54-211ENST00000474929 GALR2O43603 387 aaPredicted RBP9.92□□□□□ -0.82
USP54-211ENST00000474929 AVPR2P30518 371 aa9.92□□□□□ -0.82
USP54-211ENST00000474929 ITGA7Q13683 1181 aa9.92□□□□□ -0.82
USP54-211ENST00000474929 ZNF792Q3KQV3 632 aa9.92□□□□□ -0.82
USP54-211ENST00000474929 ZNF467Q7Z7K2 595 aaPredicted RBP9.92□□□□□ -0.82
USP54-211ENST00000474929 ADSSL1Q8N142 457 aa9.92□□□□□ -0.82
USP54-211ENST00000474929 MAGEB6Q8N7X4 407 aa9.92□□□□□ -0.82
USP54-211ENST00000474929 SCLYQ96I15 445 aa9.92□□□□□ -0.82
USP54-211ENST00000474929 AGBL1Q96MI9 1066 aa9.92□□□□□ -0.82
USP54-211ENST00000474929 SAMD11Q96NU1 681 aa9.92□□□□□ -0.82
USP54-211ENST00000474929 CRBNQ96SW2 442 aa9.92□□□□□ -0.82
USP54-211ENST00000474929 ABHD16BQ9H3Z7 469 aa9.92□□□□□ -0.82
USP54-211ENST00000474929 BICC1Q9H694 974 aaKnown RBP9.92□□□□□ -0.82
USP54-211ENST00000474929 SUGCTQ9HAC7 445 aa9.92□□□□□ -0.82
USP54-211ENST00000474929 CHD6Q8TD26 2715 aa9.92□□□□□ -0.82
USP54-211ENST00000474929 COL4A6Q14031 1691 aa9.92□□□□□ -0.82
USP54-211ENST00000474929 MYADML2A6NDP7 307 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 H0Y858 1186 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 PITPNM1O00562 1244 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 IGSF3O75054 1194 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 EFCAB14O75071 495 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 TAL1P17542 331 aaPredicted RBP9.91□□□□□ -0.82
USP54-211ENST00000474929 ZXDAP98168 799 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 RASGRF1Q13972 1273 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 COL19A1Q14993 1142 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 RAB3GAP1Q15042 981 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 RALBP1Q15311 655 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 ST3GAL2Q16842 350 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 MAMDC4Q6UXC1 1216 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 DEFB128Q7Z7B8 93 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 FBXO22Q8NEZ5 403 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 ALG13Q9NP73 1137 aaKnown RBP9.91□□□□□ -0.82
USP54-211ENST00000474929 TLR9Q9NR96 1032 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 CEP126Q9P2H0 1117 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 FOCADQ5VW36 1801 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 TRIOO75962 3097 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 FAM208BQ5VWN6 2430 aa9.91□□□□□ -0.82
USP54-211ENST00000474929 ZNFX1Q9P2E3 1918 aaKnown RBP9.9□□□□□ -0.82
USP54-211ENST00000474929 FLT1P17948 1338 aa9.9□□□□□ -0.82
USP54-211ENST00000474929 B4GALT4O60513 344 aa9.9□□□□□ -0.82
USP54-211ENST00000474929 CIAO1O76071 339 aa9.9□□□□□ -0.82
USP54-211ENST00000474929 ARHGEF15O94989 841 aa9.9□□□□□ -0.82
USP54-211ENST00000474929 PHKA1P46020 1223 aa9.9□□□□□ -0.82
USP54-211ENST00000474929 JAG1P78504 1218 aa9.9□□□□□ -0.82
USP54-211ENST00000474929 SMAD4Q13485 552 aaKnown RBP9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms