RNA–Protein interactions for RNA: ENST00000474647.1

CCDC78-209, Transcript of coiled-coil domain containing 78, humanhuman

TSL 3

Gene CCDC78, Length 506 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-209ENST00000474647 SYNRGQ9UMZ2 1314 aa16.78■□□□□ 0.28
CCDC78-209ENST00000474647 ZNF865P0CJ78 1059 aaPredicted RBP16.78■□□□□ 0.28
CCDC78-209ENST00000474647 FOSL2P15408 326 aa16.78■□□□□ 0.28
CCDC78-209ENST00000474647 REPS2Q8NFH8 660 aa16.78■□□□□ 0.28
CCDC78-209ENST00000474647 SLF1Q9BQI6 1058 aa16.78■□□□□ 0.28
CCDC78-209ENST00000474647 ZBTB40Q9NUA8 1239 aa16.78■□□□□ 0.28
CCDC78-209ENST00000474647 TMEM39AQ9NV64 488 aa16.78■□□□□ 0.28
CCDC78-209ENST00000474647 ZHX1Q9UKY1 873 aaPredicted RBP16.78■□□□□ 0.28
CCDC78-209ENST00000474647 LCTP09848 1927 aa16.78■□□□□ 0.28
CCDC78-209ENST00000474647 FPGSQ05932 587 aa16.77■□□□□ 0.28
CCDC78-209ENST00000474647 DDX11Q96FC9 970 aa16.77■□□□□ 0.28
CCDC78-209ENST00000474647 TEX13BQ9BXU2 312 aa16.77■□□□□ 0.28
CCDC78-209ENST00000474647 STARD7Q9NQZ5 370 aa16.77■□□□□ 0.28
CCDC78-209ENST00000474647 CTDP1Q9Y5B0 961 aaPredicted RBP16.77■□□□□ 0.28
CCDC78-209ENST00000474647 MINDY4BA8MYZ0 360 aa16.76■□□□□ 0.27
CCDC78-209ENST00000474647 KIAA0355O15063 1070 aa16.76■□□□□ 0.27
CCDC78-209ENST00000474647 SMARCA5O60264 1052 aaPredicted RBP16.76■□□□□ 0.27
CCDC78-209ENST00000474647 ADAMTS4O75173 837 aa16.76■□□□□ 0.27
CCDC78-209ENST00000474647 EPHB4P54760 987 aa16.76■□□□□ 0.27
CCDC78-209ENST00000474647 CPXCR1Q8N123 301 aa16.76■□□□□ 0.27
CCDC78-209ENST00000474647 LRRCC1Q9C099 1032 aa16.76■□□□□ 0.27
CCDC78-209ENST00000474647 MKNK2Q9HBH9 465 aa16.76■□□□□ 0.27
CCDC78-209ENST00000474647 DCDC2CA8MYV0 355 aa16.75■□□□□ 0.27
CCDC78-209ENST00000474647 RASA1P20936 1047 aa16.75■□□□□ 0.27
CCDC78-209ENST00000474647 ACLYP53396 1101 aa16.75■□□□□ 0.27
CCDC78-209ENST00000474647 NUP133Q8WUM0 1156 aa16.75■□□□□ 0.27
CCDC78-209ENST00000474647 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.75■□□□□ 0.27
CCDC78-209ENST00000474647 FAM184BQ9ULE4 1060 aa16.75■□□□□ 0.27
CCDC78-209ENST00000474647 RIPK3Q9Y572 518 aa16.75■□□□□ 0.27
CCDC78-209ENST00000474647 SYNGAP1Q96PV0 1343 aa16.74■□□□□ 0.27
CCDC78-209ENST00000474647 F5H6K3 240 aa16.74■□□□□ 0.27
CCDC78-209ENST00000474647 SNAI1O95863 264 aaPredicted RBP16.74■□□□□ 0.27
CCDC78-209ENST00000474647 NDUFB10O96000 172 aa16.74■□□□□ 0.27
CCDC78-209ENST00000474647 KLRC3Q07444 240 aa16.74■□□□□ 0.27
CCDC78-209ENST00000474647 FAAP100Q0VG06 881 aa16.74■□□□□ 0.27
CCDC78-209ENST00000474647 KIFC2Q96AC6 838 aa16.74■□□□□ 0.27
CCDC78-209ENST00000474647 TSEN34Q9BSV6 310 aaKnown RBP16.74■□□□□ 0.27
CCDC78-209ENST00000474647 CHMP4BQ9H444 224 aaKnown RBP16.74■□□□□ 0.27
CCDC78-209ENST00000474647 REV3LO60673 3130 aa16.73■□□□□ 0.27
CCDC78-209ENST00000474647 MYADML2A6NDP7 307 aa16.73■□□□□ 0.27
CCDC78-209ENST00000474647 MOXD2PA6NHM9 499 aa16.73■□□□□ 0.27
CCDC78-209ENST00000474647 ZBED4O75132 1171 aa16.73■□□□□ 0.27
CCDC78-209ENST00000474647 C6orf222P0C671 652 aaPredicted RBP16.73■□□□□ 0.27
CCDC78-209ENST00000474647 KCNA10Q16322 511 aa16.73■□□□□ 0.27
CCDC78-209ENST00000474647 MSL3Q8N5Y2 521 aaKnown RBP16.73■□□□□ 0.27
CCDC78-209ENST00000474647 PRPF38AQ8NAV1 312 aaKnown RBP16.73■□□□□ 0.27
CCDC78-209ENST00000474647 VTI1AQ96AJ9 217 aa16.73■□□□□ 0.27
CCDC78-209ENST00000474647 STRBPQ96SI9 672 aaKnown RBP16.73■□□□□ 0.27
CCDC78-209ENST00000474647 RAVER2Q9HCJ3 691 aaKnown RBP16.73■□□□□ 0.27
CCDC78-209ENST00000474647 NYAP2Q9P242 653 aa16.73■□□□□ 0.27
CCDC78-209ENST00000474647 CLIP2Q9UDT6 1046 aa16.73■□□□□ 0.27
CCDC78-209ENST00000474647 ISY1Q9ULR0 285 aaKnown RBP16.73■□□□□ 0.27
CCDC78-209ENST00000474647 CHD9Q3L8U1 2897 aa16.73■□□□□ 0.27
CCDC78-209ENST00000474647 GSG1L2A8MUP6 293 aa16.72■□□□□ 0.27
CCDC78-209ENST00000474647 DNAJB2P25686 324 aa16.72■□□□□ 0.27
CCDC78-209ENST00000474647 TDO2P48775 406 aa16.72■□□□□ 0.27
CCDC78-209ENST00000474647 SBK1Q52WX2 424 aa16.72■□□□□ 0.27
CCDC78-209ENST00000474647 ANKRD33Q7Z3H0 272 aa16.72■□□□□ 0.27
CCDC78-209ENST00000474647 ANKRD35Q8N283 1001 aa16.72■□□□□ 0.27
CCDC78-209ENST00000474647 GLT1D1Q96MS3 346 aa16.72■□□□□ 0.27
CCDC78-209ENST00000474647 MROH7Q68CQ1 1323 aa16.71■□□□□ 0.27
CCDC78-209ENST00000474647 DNAJC25-GNG10A0A024R161 153 aa16.71■□□□□ 0.27
CCDC78-209ENST00000474647 TMEM265A0A087WTH1 108 aa16.71■□□□□ 0.27
CCDC78-209ENST00000474647 ADCY6O43306 1168 aa16.71■□□□□ 0.27
CCDC78-209ENST00000474647 DUSP11O75319 330 aaKnown RBP16.71■□□□□ 0.27
CCDC78-209ENST00000474647 PRDM1O75626 825 aa16.71■□□□□ 0.27
CCDC78-209ENST00000474647 APPP05067 770 aa16.71■□□□□ 0.27
CCDC78-209ENST00000474647 IRX5P78411 483 aaPredicted RBP16.71■□□□□ 0.27
CCDC78-209ENST00000474647 ACVR2BQ13705 512 aa16.71■□□□□ 0.27
CCDC78-209ENST00000474647 TSHZ3Q63HK5 1081 aa16.71■□□□□ 0.27
CCDC78-209ENST00000474647 MAMDC4Q6UXC1 1216 aa16.71■□□□□ 0.27
CCDC78-209ENST00000474647 LRRC47Q8N1G4 583 aaKnown RBP16.71■□□□□ 0.27
CCDC78-209ENST00000474647 KLHDC9Q8NEP7 349 aa16.71■□□□□ 0.27
CCDC78-209ENST00000474647 TOX2Q96NM4 488 aa16.71■□□□□ 0.27
CCDC78-209ENST00000474647 SPC25Q9HBM1 224 aa16.71■□□□□ 0.27
CCDC78-209ENST00000474647 HOMER2Q9NSB8 354 aa16.71■□□□□ 0.27
CCDC78-209ENST00000474647 ECHDC1Q9NTX5 307 aa16.71■□□□□ 0.27
CCDC78-209ENST00000474647 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.71■□□□□ 0.27
CCDC78-209ENST00000474647 SCN5AQ14524 2016 aa16.7■□□□□ 0.26
CCDC78-209ENST00000474647 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.7■□□□□ 0.26
CCDC78-209ENST00000474647 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.7■□□□□ 0.26
CCDC78-209ENST00000474647 GPAA1O43292 621 aa16.7■□□□□ 0.26
CCDC78-209ENST00000474647 TIMP1P01033 207 aa16.7■□□□□ 0.26
CCDC78-209ENST00000474647 ASGR1P07306 291 aa16.7■□□□□ 0.26
CCDC78-209ENST00000474647 GRIN2CQ14957 1233 aa16.7■□□□□ 0.26
CCDC78-209ENST00000474647 CCDC144BQ3MJ40 725 aa16.7■□□□□ 0.26
CCDC78-209ENST00000474647 GIMAP6Q6P9H5 292 aa16.7■□□□□ 0.26
CCDC78-209ENST00000474647 ZNF444Q8N0Y2 327 aaPredicted RBP16.7■□□□□ 0.26
CCDC78-209ENST00000474647 KBTBD3Q8NAB2 608 aa16.7■□□□□ 0.26
CCDC78-209ENST00000474647 PCSK9Q8NBP7 692 aaKnown RBP16.7■□□□□ 0.26
CCDC78-209ENST00000474647 APPBP2Q92624 585 aa16.7■□□□□ 0.26
CCDC78-209ENST00000474647 OSBP2Q969R2 916 aa16.7■□□□□ 0.26
CCDC78-209ENST00000474647 CEP95Q96GE4 821 aa16.7■□□□□ 0.26
CCDC78-209ENST00000474647 GPATCH3Q96I76 525 aa16.7■□□□□ 0.26
CCDC78-209ENST00000474647 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.7■□□□□ 0.26
CCDC78-209ENST00000474647 EPB41L4AQ9HCS5 686 aaPredicted RBP16.7■□□□□ 0.26
CCDC78-209ENST00000474647 MYH6P13533 1939 aa16.7■□□□□ 0.26
CCDC78-209ENST00000474647 ATP2A1O14983 1001 aa16.69■□□□□ 0.26
CCDC78-209ENST00000474647 CCSAPQ6IQ19 270 aaPredicted RBP16.69■□□□□ 0.26
CCDC78-209ENST00000474647 CCDC129Q6ZRS4 1044 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms