RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 MYO1BO43795 1136 aa21.61■■□□□ 1.05
VIM-203ENST00000469543 ABL1P00519 1130 aa21.61■■□□□ 1.05
VIM-203ENST00000469543 CALML3P27482 149 aa21.61■■□□□ 1.05
VIM-203ENST00000469543 STAT6P42226 847 aa21.61■■□□□ 1.05
VIM-203ENST00000469543 TRAPPC10P48553 1259 aa21.61■■□□□ 1.05
VIM-203ENST00000469543 FXR1P51114 621 aaKnown RBP eCLIP21.61■■□□□ 1.05
VIM-203ENST00000469543 PMS1P54277 932 aaKnown RBP21.61■■□□□ 1.05
VIM-203ENST00000469543 RHBDL3P58872 404 aa21.61■■□□□ 1.05
VIM-203ENST00000469543 SEPT12Q8IYM1 358 aa21.61■■□□□ 1.05
VIM-203ENST00000469543 LZTFL1Q9NQ48 299 aa21.61■■□□□ 1.05
VIM-203ENST00000469543 GGA1Q9UJY5 639 aa21.61■■□□□ 1.05
VIM-203ENST00000469543 ZNF831Q5JPB2 1677 aa21.61■■□□□ 1.05
VIM-203ENST00000469543 FLT1P17948 1338 aa21.6■■□□□ 1.05
VIM-203ENST00000469543 KIF2AO00139 706 aaPredicted RBP21.6■■□□□ 1.05
VIM-203ENST00000469543 STX10O60499 249 aa21.6■■□□□ 1.05
VIM-203ENST00000469543 GNG11P61952 73 aa21.6■■□□□ 1.05
VIM-203ENST00000469543 RAD9BQ6WBX8 426 aa21.6■■□□□ 1.05
VIM-203ENST00000469543 AMOTL1Q8IY63 956 aa21.6■■□□□ 1.05
VIM-203ENST00000469543 BARHL2Q9NY43 387 aa21.6■■□□□ 1.05
VIM-203ENST00000469543 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.6■■□□□ 1.058e-10■□□□□ 9.4
VIM-203ENST00000469543 SBF2Q86WG5 1849 aa21.6■■□□□ 1.05
VIM-203ENST00000469543 LAMB1P07942 1786 aa21.6■■□□□ 1.05
VIM-203ENST00000469543 GTF2IP78347 998 aa21.6■■□□□ 1.05
VIM-203ENST00000469543 GSTO1P78417 241 aa21.6■■□□□ 1.05
VIM-203ENST00000469543 SYCP1Q15431 976 aa21.6■■□□□ 1.05
VIM-203ENST00000469543 LETM2Q2VYF4 491 aa21.6■■□□□ 1.05
VIM-203ENST00000469543 DTHD1Q6ZMT9 781 aa21.6■■□□□ 1.05
VIM-203ENST00000469543 TBC1D16Q8TBP0 767 aa21.6■■□□□ 1.05
VIM-203ENST00000469543 ANKS1AQ92625 1134 aa21.6■■□□□ 1.05
VIM-203ENST00000469543 CCDC34Q96HJ3 373 aa21.6■■□□□ 1.05
VIM-203ENST00000469543 TAB2Q9NYJ8 693 aa21.6■■□□□ 1.05
VIM-203ENST00000469543 FRMPD2Q68DX3 1309 aaPredicted RBP21.59■■□□□ 1.05
VIM-203ENST00000469543 RPN1P04843 607 aaKnown RBP21.59■■□□□ 1.05
VIM-203ENST00000469543 DDR1Q08345 913 aa21.59■■□□□ 1.05
VIM-203ENST00000469543 DHX8Q14562 1220 aaKnown RBP21.59■■□□□ 1.05
VIM-203ENST00000469543 KRT31Q15323 416 aa21.59■■□□□ 1.05
VIM-203ENST00000469543 GPR75-ASB3A0A0A6YYF3 556 aa21.59■■□□□ 1.05
VIM-203ENST00000469543 USP17L5A8MUK1 530 aa21.59■■□□□ 1.05
VIM-203ENST00000469543 NELFBQ8WX92 580 aa21.59■■□□□ 1.05
VIM-203ENST00000469543 PIGSQ96S52 555 aa21.59■■□□□ 1.05
VIM-203ENST00000469543 PARP3Q9Y6F1 533 aa21.59■■□□□ 1.05
VIM-203ENST00000469543 AKR1B15C9JRZ8 316 aaPredicted RBP21.58■■□□□ 1.05
VIM-203ENST00000469543 MEX3CQ5U5Q3 659 aaKnown RBP21.58■■□□□ 1.05
VIM-203ENST00000469543 MORC2Q9Y6X9 1032 aaPredicted RBP21.58■■□□□ 1.05
VIM-203ENST00000469543 GYPCP04921 128 aa21.58■■□□□ 1.04
VIM-203ENST00000469543 NAPAP54920 295 aa21.58■■□□□ 1.04
VIM-203ENST00000469543 CRY2Q49AN0 593 aa21.58■■□□□ 1.04
VIM-203ENST00000469543 CARD6Q9BX69 1037 aa21.58■■□□□ 1.04
VIM-203ENST00000469543 DISC1Q9NRI5 854 aa21.58■■□□□ 1.04
VIM-203ENST00000469543 TMEM260Q9NX78 707 aa21.58■■□□□ 1.04
VIM-203ENST00000469543 BIN2Q9UBW5 565 aaPredicted RBP21.58■■□□□ 1.04
VIM-203ENST00000469543 N4BP3O15049 544 aa21.57■■□□□ 1.04
VIM-203ENST00000469543 GTPBP6O43824 516 aaPredicted RBP21.57■■□□□ 1.04
VIM-203ENST00000469543 CCNT1O60563 726 aaKnown RBP21.57■■□□□ 1.04
VIM-203ENST00000469543 LDHCP07864 332 aa21.57■■□□□ 1.04
VIM-203ENST00000469543 PBX1P40424 430 aa21.57■■□□□ 1.04
VIM-203ENST00000469543 ZNF446Q9NWS9 450 aa21.57■■□□□ 1.04
VIM-203ENST00000469543 CGNQ9P2M7 1197 aaKnown RBP21.57■■□□□ 1.04
VIM-203ENST00000469543 SMCO2A6NFE2 343 aa21.57■■□□□ 1.04
VIM-203ENST00000469543 ZSCAN12O43309 604 aa21.57■■□□□ 1.04
VIM-203ENST00000469543 JAKMIP3Q5VZ66 844 aa21.57■■□□□ 1.04
VIM-203ENST00000469543 UIMC1Q96RL1 719 aa21.57■■□□□ 1.04
VIM-203ENST00000469543 TAF1LQ8IZX4 1826 aa21.56■■□□□ 1.04
VIM-203ENST00000469543 IL1R1P14778 569 aa21.56■■□□□ 1.04
VIM-203ENST00000469543 LONP1P36776 959 aaKnown RBP21.56■■□□□ 1.04
VIM-203ENST00000469543 UBA7P41226 1012 aa21.56■■□□□ 1.04
VIM-203ENST00000469543 ARL6IP4Q66PJ3 421 aaKnown RBP21.56■■□□□ 1.04
VIM-203ENST00000469543 C16orf86Q6ZW13 317 aa21.56■■□□□ 1.04
VIM-203ENST00000469543 LRRC47Q8N1G4 583 aaKnown RBP21.56■■□□□ 1.04
VIM-203ENST00000469543 HPS3Q969F9 1004 aa21.56■■□□□ 1.04
VIM-203ENST00000469543 SH3GLB2Q9NR46 395 aa21.56■■□□□ 1.04
VIM-203ENST00000469543 PAK1Q13153 545 aa21.56■■□□□ 1.04
VIM-203ENST00000469543 TXNRD1Q16881 649 aa21.56■■□□□ 1.04
VIM-203ENST00000469543 PPFIBP1Q86W92 1011 aa21.56■■□□□ 1.04
VIM-203ENST00000469543 TCP11L1Q9NUJ3 509 aa21.56■■□□□ 1.04
VIM-203ENST00000469543 SNED1Q8TER0 1413 aa21.56■■□□□ 1.04
VIM-203ENST00000469543 ROBO3Q96MS0 1386 aa21.55■■□□□ 1.04
VIM-203ENST00000469543 NKRFO15226 690 aaKnown RBP eCLIP21.55■■□□□ 1.04
VIM-203ENST00000469543 TRIM37O94972 964 aa21.55■■□□□ 1.04
VIM-203ENST00000469543 TFRCP02786 760 aaKnown RBP21.55■■□□□ 1.04
VIM-203ENST00000469543 PARP1P09874 1014 aaKnown RBP21.55■■□□□ 1.04
VIM-203ENST00000469543 TECP42680 631 aa21.55■■□□□ 1.04
VIM-203ENST00000469543 ARHGAP29Q52LW3 1261 aa21.55■■□□□ 1.04
VIM-203ENST00000469543 IRF2BP1Q8IU81 584 aa21.55■■□□□ 1.04
VIM-203ENST00000469543 SCNN1DP51172 638 aa21.55■■□□□ 1.04
VIM-203ENST00000469543 ZNF658Q5TYW1 1059 aaPredicted RBP21.55■■□□□ 1.04
VIM-203ENST00000469543 COA7Q96BR5 231 aa21.55■■□□□ 1.04
VIM-203ENST00000469543 ZSCAN20P17040 1043 aaPredicted RBP21.54■■□□□ 1.04
VIM-203ENST00000469543 ST5P78524 1137 aa21.54■■□□□ 1.04
VIM-203ENST00000469543 PHLPP2Q6ZVD8 1323 aa21.54■■□□□ 1.04
VIM-203ENST00000469543 PES1O00541 588 aaKnown RBP21.54■■□□□ 1.04
VIM-203ENST00000469543 GNAQP50148 359 aa21.54■■□□□ 1.04
VIM-203ENST00000469543 DOK7Q18PE1 504 aa21.54■■□□□ 1.04
VIM-203ENST00000469543 NEDD1Q8NHV4 660 aa21.54■■□□□ 1.04
VIM-203ENST00000469543 DDX4Q9NQI0 724 aaKnown RBP21.54■■□□□ 1.04
VIM-203ENST00000469543 AFF2P51816 1311 aa21.54■■□□□ 1.04
VIM-203ENST00000469543 KCNJ18B7U540 433 aa21.53■■□□□ 1.04
VIM-203ENST00000469543 KCNJ12Q14500 433 aa21.53■■□□□ 1.04
VIM-203ENST00000469543 TCP11X2Q5H9J9 407 aa21.53■■□□□ 1.04
VIM-203ENST00000469543 CERKQ8TCT0 537 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms