RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 UBR2Q8IWV8 1755 aa6.85□□□□□ -1.31
HMGB1-207ENST00000468384 MYO3BQ8WXR4 1341 aa6.84□□□□□ -1.31
HMGB1-207ENST00000468384 A6NJR5 290 aa6.84□□□□□ -1.31
HMGB1-207ENST00000468384 FYB1O15117 783 aa6.84□□□□□ -1.31
HMGB1-207ENST00000468384 CELA2BP08218 269 aaPredicted RBP6.84□□□□□ -1.31
HMGB1-207ENST00000468384 ZKSCAN1P17029 563 aaPredicted RBP6.84□□□□□ -1.31
HMGB1-207ENST00000468384 ADCYAP1R1P41586 468 aa6.84□□□□□ -1.31
HMGB1-207ENST00000468384 MAP3K10Q02779 954 aa6.84□□□□□ -1.31
HMGB1-207ENST00000468384 PPATQ06203 517 aa6.84□□□□□ -1.31
HMGB1-207ENST00000468384 DLGAP5Q15398 846 aa6.84□□□□□ -1.31
HMGB1-207ENST00000468384 PDZD3Q86UT5 571 aa6.84□□□□□ -1.31
HMGB1-207ENST00000468384 ANKRD13CQ8N6S4 541 aa6.84□□□□□ -1.31
HMGB1-207ENST00000468384 ZNF513Q8N8E2 541 aaPredicted RBP6.84□□□□□ -1.31
HMGB1-207ENST00000468384 VEZTQ9HBM0 779 aa6.84□□□□□ -1.31
HMGB1-207ENST00000468384 DDX20Q9UHI6 824 aaKnown RBP6.84□□□□□ -1.31
HMGB1-207ENST00000468384 PSME4Q14997 1843 aa6.84□□□□□ -1.31
HMGB1-207ENST00000468384 KBTBD13C9JR72 458 aa6.83□□□□□ -1.32
HMGB1-207ENST00000468384 TRAK2O60296 914 aa6.83□□□□□ -1.32
HMGB1-207ENST00000468384 PQBP1O60828 265 aaKnown RBP6.83□□□□□ -1.32
HMGB1-207ENST00000468384 XRCC5P13010 732 aaKnown RBP6.83□□□□□ -1.32
HMGB1-207ENST00000468384 LMNB2Q03252 620 aa6.83□□□□□ -1.32
HMGB1-207ENST00000468384 MCM6Q14566 821 aa6.83□□□□□ -1.32
HMGB1-207ENST00000468384 SMAD2Q15796 467 aaKnown RBP6.83□□□□□ -1.32
HMGB1-207ENST00000468384 TMEM67Q5HYA8 995 aa6.83□□□□□ -1.32
HMGB1-207ENST00000468384 TRMT44Q8IYL2 757 aaKnown RBP6.83□□□□□ -1.32
HMGB1-207ENST00000468384 CCDC82Q8N4S0 544 aa6.83□□□□□ -1.32
HMGB1-207ENST00000468384 ARRDC4Q8NCT1 418 aa6.83□□□□□ -1.32
HMGB1-207ENST00000468384 FERMT2Q96AC1 680 aa6.83□□□□□ -1.32
HMGB1-207ENST00000468384 RIPOR3Q96MK2 946 aa6.83□□□□□ -1.32
HMGB1-207ENST00000468384 COL4A1P02462 1669 aa6.83□□□□□ -1.32
HMGB1-207ENST00000468384 WDFY3Q8IZQ1 3526 aa6.83□□□□□ -1.32
HMGB1-207ENST00000468384 SALL1Q9NSC2 1324 aa6.82□□□□□ -1.32
HMGB1-207ENST00000468384 TMEM8BA6NDV4 472 aa6.82□□□□□ -1.32
HMGB1-207ENST00000468384 ENO4A6NNW6 628 aa6.82□□□□□ -1.32
HMGB1-207ENST00000468384 RNMTO43148 476 aaKnown RBP6.82□□□□□ -1.32
HMGB1-207ENST00000468384 MSCO60682 206 aa6.82□□□□□ -1.32
HMGB1-207ENST00000468384 UFL1O94874 794 aa6.82□□□□□ -1.32
HMGB1-207ENST00000468384 TAP1Q03518 808 aa6.82□□□□□ -1.32
HMGB1-207ENST00000468384 FAAP100Q0VG06 881 aa6.82□□□□□ -1.32
HMGB1-207ENST00000468384 SH3D19Q5HYK7 790 aa6.82□□□□□ -1.32
HMGB1-207ENST00000468384 KIAA0825Q8IV33 1275 aa6.82□□□□□ -1.32
HMGB1-207ENST00000468384 SMCR8Q8TEV9 937 aaPredicted RBP6.82□□□□□ -1.32
HMGB1-207ENST00000468384 TEPSINQ96N21 525 aa6.82□□□□□ -1.32
HMGB1-207ENST00000468384 ZFP64Q9NPA5 681 aa6.82□□□□□ -1.32
HMGB1-207ENST00000468384 RAI2Q9Y5P3 530 aa6.82□□□□□ -1.32
HMGB1-207ENST00000468384 SLC4A7Q9Y6M7 1214 aa6.82□□□□□ -1.32
HMGB1-207ENST00000468384 R4GN57 208 aa6.82□□□□□ -1.32
HMGB1-207ENST00000468384 AKAP13Q12802 2813 aa6.82□□□□□ -1.32
HMGB1-207ENST00000468384 FREM2Q5SZK8 3169 aa6.82□□□□□ -1.32
HMGB1-207ENST00000468384 FRMPD3Q5JV73 1810 aa6.82□□□□□ -1.32
HMGB1-207ENST00000468384 STXBP3O00186 592 aa6.81□□□□□ -1.32
HMGB1-207ENST00000468384 MYO1BO43795 1136 aa6.81□□□□□ -1.32
HMGB1-207ENST00000468384 FGBP02675 491 aa6.81□□□□□ -1.32
HMGB1-207ENST00000468384 ATP2A2P16615 1042 aaKnown RBP6.81□□□□□ -1.32
HMGB1-207ENST00000468384 ZNF200P98182 395 aaPredicted RBP6.81□□□□□ -1.32
HMGB1-207ENST00000468384 ANGPT1Q15389 498 aa6.81□□□□□ -1.32
HMGB1-207ENST00000468384 C6orf118Q5T5N4 469 aa6.81□□□□□ -1.32
HMGB1-207ENST00000468384 N4BP2L1Q5TBK1 243 aaPredicted RBP6.81□□□□□ -1.32
HMGB1-207ENST00000468384 OTOP2Q7RTS6 562 aa6.81□□□□□ -1.32
HMGB1-207ENST00000468384 TMEM199Q8N511 208 aa6.81□□□□□ -1.32
HMGB1-207ENST00000468384 BEND7Q8N7W2 519 aaPredicted RBP6.81□□□□□ -1.32
HMGB1-207ENST00000468384 GDPD5Q8WTR4 605 aa6.81□□□□□ -1.32
HMGB1-207ENST00000468384 WRNIP1Q96S55 665 aa6.81□□□□□ -1.32
HMGB1-207ENST00000468384 TMEM134Q9H6X4 195 aa6.81□□□□□ -1.32
HMGB1-207ENST00000468384 NPDC1Q9NQX5 325 aaPredicted RBP6.81□□□□□ -1.32
HMGB1-207ENST00000468384 PCDHAC2Q9Y5I4 1007 aa6.81□□□□□ -1.32
HMGB1-207ENST00000468384 AK9Q5TCS8 1911 aa6.81□□□□□ -1.32
HMGB1-207ENST00000468384 COL12A1Q99715 3063 aa6.81□□□□□ -1.32
HMGB1-207ENST00000468384 EIF4A2Q14240 407 aaKnown RBP6.8□□□□□ -1.32
HMGB1-207ENST00000468384 CCL14Q16627 93 aa6.8□□□□□ -1.32
HMGB1-207ENST00000468384 FAM110CQ1W6H9 321 aa6.8□□□□□ -1.32
HMGB1-207ENST00000468384 ARTNQ5T4W7 220 aa6.8□□□□□ -1.32
HMGB1-207ENST00000468384 STRIP1Q5VSL9 837 aa6.8□□□□□ -1.32
HMGB1-207ENST00000468384 ZNF790Q6PG37 636 aa6.8□□□□□ -1.32
HMGB1-207ENST00000468384 SPRED2Q7Z698 418 aa6.8□□□□□ -1.32
HMGB1-207ENST00000468384 IL23AQ9NPF7 189 aa6.8□□□□□ -1.32
HMGB1-207ENST00000468384 TBX21Q9UL17 535 aa6.8□□□□□ -1.32
HMGB1-207ENST00000468384 USP16Q9Y5T5 823 aa6.8□□□□□ -1.32
HMGB1-207ENST00000468384 HCLS1P14317 486 aaPredicted RBP6.79□□□□□ -1.32
HMGB1-207ENST00000468384 CNGA1P29973 690 aa6.79□□□□□ -1.32
HMGB1-207ENST00000468384 CLCN1P35523 988 aa6.79□□□□□ -1.32
HMGB1-207ENST00000468384 FZD5Q13467 585 aa6.79□□□□□ -1.32
HMGB1-207ENST00000468384 EP400NLQ6ZTU2 488 aa6.79□□□□□ -1.32
HMGB1-207ENST00000468384 PPP1R42Q7Z4L9 355 aa6.79□□□□□ -1.32
HMGB1-207ENST00000468384 TOX2Q96NM4 488 aa6.79□□□□□ -1.32
HMGB1-207ENST00000468384 FMNL2Q96PY5 1086 aa6.79□□□□□ -1.32
HMGB1-207ENST00000468384 NUDT12Q9BQG2 462 aa6.79□□□□□ -1.32
HMGB1-207ENST00000468384 GPCPD1Q9NPB8 672 aa6.79□□□□□ -1.32
HMGB1-207ENST00000468384 DNMT3LQ9UJW3 386 aa6.79□□□□□ -1.32
HMGB1-207ENST00000468384 RALGAPA2Q2PPJ7 1873 aa6.79□□□□□ -1.32
HMGB1-207ENST00000468384 ASXL3Q9C0F0 2248 aa6.78□□□□□ -1.32
HMGB1-207ENST00000468384 DCDC2CA8MYV0 355 aa6.78□□□□□ -1.32
HMGB1-207ENST00000468384 ERVV-1B6SEH8 477 aa6.78□□□□□ -1.32
HMGB1-207ENST00000468384 ANKRD33Q7Z3H0 272 aa6.78□□□□□ -1.32
HMGB1-207ENST00000468384 NANOS1Q8WY41 292 aaKnown RBP6.78□□□□□ -1.32
HMGB1-207ENST00000468384 CELF1Q92879 486 aaKnown RBP6.78□□□□□ -1.32
HMGB1-207ENST00000468384 PABPC5Q96DU9 382 aaKnown RBP6.78□□□□□ -1.32
HMGB1-207ENST00000468384 PRMT6Q96LA8 375 aaPredicted RBP6.78□□□□□ -1.32
HMGB1-207ENST00000468384 CLMPQ9H6B4 373 aa6.78□□□□□ -1.32
HMGB1-207ENST00000468384 GGA1Q9UJY5 639 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms