RNA–Protein interactions for RNA: ENST00000464362.5

HPS4-208, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 4,277 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-208ENST00000464362 ATG9AQ7Z3C6 839 aa10.09□□□□□ -0.79
HPS4-208ENST00000464362 KRT25Q7Z3Z0 450 aa10.09□□□□□ -0.79
HPS4-208ENST00000464362 MB21D2Q8IYB1 491 aaPredicted RBP10.09□□□□□ -0.79
HPS4-208ENST00000464362 KAZALD1Q96I82 304 aa10.09□□□□□ -0.79
HPS4-208ENST00000464362 SCLT1Q96NL6 688 aa10.09□□□□□ -0.79
HPS4-208ENST00000464362 TRIM49BA6NDI0 452 aa10.09□□□□□ -0.79
HPS4-208ENST00000464362 ECM2O94769 699 aaPredicted RBP10.09□□□□□ -0.79
HPS4-208ENST00000464362 PLCG2P16885 1265 aa10.09□□□□□ -0.79
HPS4-208ENST00000464362 PPP2R5BQ15173 497 aa10.09□□□□□ -0.79
HPS4-208ENST00000464362 ARHGAP44Q17R89 818 aa10.09□□□□□ -0.79
HPS4-208ENST00000464362 SUSD4Q5VX71 490 aa10.09□□□□□ -0.79
HPS4-208ENST00000464362 STXBP4Q6ZWJ1 553 aa10.09□□□□□ -0.79
HPS4-208ENST00000464362 ENOX1Q8TC92 643 aaKnown RBP10.09□□□□□ -0.79
HPS4-208ENST00000464362 GSDMAQ96QA5 445 aa10.09□□□□□ -0.79
HPS4-208ENST00000464362 RNF26Q9BY78 433 aaPredicted RBP10.09□□□□□ -0.79
HPS4-208ENST00000464362 LAMC1P11047 1609 aa10.09□□□□□ -0.79
HPS4-208ENST00000464362 USP17L3A6NCW0 530 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 USP17L4A6NCW7 530 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 DNM2P50570 870 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 ADCY7P51828 1080 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 TRAPPC3LQ5T215 181 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 USP17L1Q7RTZ2 530 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 WDR66Q8TBY9 1149 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 POLD4Q9HCU8 107 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 H7C1D1 291 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 SRGAP2O75044 1071 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 CTDNEP1O95476 244 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 TBC1D10BQ4KMP7 808 aaPredicted RBP10.08□□□□□ -0.8
HPS4-208ENST00000464362 USPL1Q5W0Q7 1092 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 E4F1Q66K89 784 aaPredicted RBP10.08□□□□□ -0.8
HPS4-208ENST00000464362 USP17L2Q6R6M4 530 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 CCDC121Q6ZUS5 278 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 DAAM2Q86T65 1068 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 SMCR8Q8TEV9 937 aaPredicted RBP10.08□□□□□ -0.8
HPS4-208ENST00000464362 CNOT6LQ96LI5 555 aaKnown RBP10.08□□□□□ -0.8
HPS4-208ENST00000464362 WDR24Q96S15 920 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 TCHPQ9BT92 498 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 KCNK9Q9NPC2 374 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 PPANQ9NQ55 473 aaKnown RBP10.08□□□□□ -0.8
HPS4-208ENST00000464362 CFBP00751 764 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 HARSP12081 509 aaKnown RBP10.08□□□□□ -0.8
HPS4-208ENST00000464362 ERCC5P28715 1186 aaPredicted RBP10.08□□□□□ -0.8
HPS4-208ENST00000464362 POLR2FP61218 127 aaKnown RBP10.08□□□□□ -0.8
HPS4-208ENST00000464362 FOXO4P98177 505 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 TERF2Q15554 542 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 CCDC155Q8N6L0 562 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 FAM212AQ96EL1 285 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 PAGE5Q96GU1 130 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 HAUS4Q9H6D7 363 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 FAM204AQ9H8W3 233 aa10.08□□□□□ -0.8
HPS4-208ENST00000464362 A0A1W2PRG0 241 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 OR52Z1P0C646 297 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 LIG3P49916 1009 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 RASSF7Q02833 373 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 ASIC2Q16515 512 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 CCDC50Q8IVM0 306 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 LSM14BQ9BX40 385 aaKnown RBP10.07□□□□□ -0.8
HPS4-208ENST00000464362 PP2D1A8MPX8 630 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 KCNK3O14649 394 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 GCNT3O95395 438 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 FDPSP14324 419 aaKnown RBP10.07□□□□□ -0.8
HPS4-208ENST00000464362 PTPREP23469 700 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 TUBB4BP68371 445 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 EHHADHQ08426 723 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 CUL4BQ13620 913 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 KRT31Q15323 416 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 DPH6Q7L8W6 267 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 CCDC84Q86UT8 332 aaPredicted RBP10.07□□□□□ -0.8
HPS4-208ENST00000464362 HOOK3Q86VS8 718 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 CPXCR1Q8N123 301 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 BCAS4Q8TDM0 211 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 NUP58Q9BVL2 599 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 TSGA10Q9BZW7 698 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 GGA1Q9UJY5 639 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 SRPRBQ9Y5M8 271 aaKnown RBP10.07□□□□□ -0.8
HPS4-208ENST00000464362 UBN2Q6ZU65 1347 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 UBAP1LF5GYI3 381 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 PRDX5P30044 214 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 LIFRP42702 1097 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 HNRNPH2P55795 449 aaKnown RBP10.07□□□□□ -0.8
HPS4-208ENST00000464362 SLC7A5Q01650 507 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 EXOSC10Q01780 885 aaKnown RBP10.07□□□□□ -0.8
HPS4-208ENST00000464362 WHAMMP3Q1A5X7 153 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 ERFEQ4G0M1 354 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 SLC44A5Q8NCS7 719 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 ABCB6Q9NP58 842 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 ATP6V0A2Q9Y487 856 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 WDR17Q8IZU2 1322 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 VIMP08670 466 aaKnown RBP10.07□□□□□ -0.8
HPS4-208ENST00000464362 SLC16A2P36021 539 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 GNGT1P63211 74 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 CCZ1BP86790 482 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 CCZ1P86791 482 aaPredicted RBP10.07□□□□□ -0.8
HPS4-208ENST00000464362 SFMBT2Q5VUG0 894 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 ZNF710Q8N1W2 664 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 COA7Q96BR5 231 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 PCDHA12Q9UN75 941 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 CFAP74Q9C0B2 1584 aa10.07□□□□□ -0.8
HPS4-208ENST00000464362 SPOPO43791 374 aa10.06□□□□□ -0.8
HPS4-208ENST00000464362 RPS6KA1Q15418 735 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms