RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 PGK1P00558 417 aa18.32■□□□□ 0.52
SKA3-204ENST00000462482 FAM109BQ6ICB4 259 aaPredicted RBP18.32■□□□□ 0.52
SKA3-204ENST00000462482 IFNL3Q8IZI9 196 aa18.32■□□□□ 0.52
SKA3-204ENST00000462482 ANKRD35Q8N283 1001 aa18.32■□□□□ 0.52
SKA3-204ENST00000462482 NAPBQ9H115 298 aa18.32■□□□□ 0.52
SKA3-204ENST00000462482 EPB41L4AQ9HCS5 686 aaPredicted RBP18.32■□□□□ 0.52
SKA3-204ENST00000462482 TACC3Q9Y6A5 838 aa18.32■□□□□ 0.52
SKA3-204ENST00000462482 A0A0G2JMZ2 1700 aa18.32■□□□□ 0.52
SKA3-204ENST00000462482 SYNGAP1Q96PV0 1343 aa18.31■□□□□ 0.52
SKA3-204ENST00000462482 M0R2C6 588 aa18.31■□□□□ 0.52
SKA3-204ENST00000462482 ATP2A1O14983 1001 aa18.31■□□□□ 0.52
SKA3-204ENST00000462482 FDX1P10109 184 aa18.31■□□□□ 0.52
SKA3-204ENST00000462482 TLE2Q04725 743 aa18.31■□□□□ 0.52
SKA3-204ENST00000462482 NUP133Q8WUM0 1156 aa18.31■□□□□ 0.52
SKA3-204ENST00000462482 BADQ92934 168 aa18.31■□□□□ 0.52
SKA3-204ENST00000462482 MKL1Q969V6 931 aa18.31■□□□□ 0.52
SKA3-204ENST00000462482 CEP95Q96GE4 821 aa18.31■□□□□ 0.52
SKA3-204ENST00000462482 SPC25Q9HBM1 224 aa18.31■□□□□ 0.52
SKA3-204ENST00000462482 PDLIM7Q9NR12 457 aa18.31■□□□□ 0.52
SKA3-204ENST00000462482 MTMR4Q9NYA4 1195 aa18.31■□□□□ 0.52
SKA3-204ENST00000462482 ZHX1Q9UKY1 873 aaPredicted RBP18.31■□□□□ 0.52
SKA3-204ENST00000462482 IGKV6D-41A0A0C4DH26 115 aa18.3■□□□□ 0.52
SKA3-204ENST00000462482 CLTBP09497 229 aa18.3■□□□□ 0.52
SKA3-204ENST00000462482 ZNF865P0CJ78 1059 aaPredicted RBP18.3■□□□□ 0.52
SKA3-204ENST00000462482 BMP3P12645 472 aa18.3■□□□□ 0.52
SKA3-204ENST00000462482 TAL1P17542 331 aaPredicted RBP18.3■□□□□ 0.52
SKA3-204ENST00000462482 IKQ13123 557 aaPredicted RBP18.3■□□□□ 0.52
SKA3-204ENST00000462482 ZNF697Q5TEC3 545 aa18.3■□□□□ 0.52
SKA3-204ENST00000462482 GMCL1P1Q8NEA9 526 aa18.3■□□□□ 0.52
SKA3-204ENST00000462482 CHST13Q8NET6 341 aa18.3■□□□□ 0.52
SKA3-204ENST00000462482 TSEN34Q9BSV6 310 aaKnown RBP18.3■□□□□ 0.52
SKA3-204ENST00000462482 RAVER2Q9HCJ3 691 aaKnown RBP18.3■□□□□ 0.52
SKA3-204ENST00000462482 SZT2Q5T011 3432 aa18.29■□□□□ 0.52
SKA3-204ENST00000462482 OAZ1P54368 228 aa18.29■□□□□ 0.52
SKA3-204ENST00000462482 SLFN13Q68D06 897 aa18.29■□□□□ 0.52
SKA3-204ENST00000462482 ZNF467Q7Z7K2 595 aaPredicted RBP18.29■□□□□ 0.52
SKA3-204ENST00000462482 LRRC47Q8N1G4 583 aaKnown RBP18.29■□□□□ 0.52
SKA3-204ENST00000462482 NEDD1Q8NHV4 660 aa18.29■□□□□ 0.52
SKA3-204ENST00000462482 CHURC1Q8WUH1 139 aa18.29■□□□□ 0.52
SKA3-204ENST00000462482 SLC38A10Q9HBR0 1119 aa18.29■□□□□ 0.52
SKA3-204ENST00000462482 STARD7Q9NQZ5 370 aa18.29■□□□□ 0.52
SKA3-204ENST00000462482 RIPK3Q9Y572 518 aa18.29■□□□□ 0.52
SKA3-204ENST00000462482 A0A1W2PQ45 241 aaPredicted RBP18.28■□□□□ 0.52
SKA3-204ENST00000462482 A0A1W2PQY0 241 aa18.28■□□□□ 0.52
SKA3-204ENST00000462482 MOXD2PA6NHM9 499 aa18.28■□□□□ 0.52
SKA3-204ENST00000462482 DCDC2CA8MYV0 355 aa18.28■□□□□ 0.52
SKA3-204ENST00000462482 POTEB2H3BUK9 544 aa18.28■□□□□ 0.52
SKA3-204ENST00000462482 PQBP1O60828 265 aaKnown RBP18.28■□□□□ 0.52
SKA3-204ENST00000462482 RAG1P15918 1043 aa18.28■□□□□ 0.52
SKA3-204ENST00000462482 TFAP4Q01664 338 aa18.28■□□□□ 0.52
SKA3-204ENST00000462482 PPARAQ07869 468 aa18.28■□□□□ 0.52
SKA3-204ENST00000462482 SHHQ15465 462 aa18.28■□□□□ 0.52
SKA3-204ENST00000462482 MAMDC4Q6UXC1 1216 aa18.28■□□□□ 0.52
SKA3-204ENST00000462482 FAM160B2Q86V87 743 aa18.28■□□□□ 0.52
SKA3-204ENST00000462482 TMEM39AQ9NV64 488 aa18.28■□□□□ 0.52
SKA3-204ENST00000462482 TRIM43BA6NCK2 446 aa18.27■□□□□ 0.52
SKA3-204ENST00000462482 TMEM232C9JQI7 657 aa18.27■□□□□ 0.52
SKA3-204ENST00000462482 MX1P20591 662 aa18.27■□□□□ 0.52
SKA3-204ENST00000462482 STAT2P52630 851 aa18.27■□□□□ 0.52
SKA3-204ENST00000462482 ACVR2BQ13705 512 aa18.27■□□□□ 0.52
SKA3-204ENST00000462482 ZMYM1Q5SVZ6 1142 aa18.27■□□□□ 0.52
SKA3-204ENST00000462482 SH3RF1Q7Z6J0 888 aa18.27■□□□□ 0.52
SKA3-204ENST00000462482 PCSK9Q8NBP7 692 aaKnown RBP18.27■□□□□ 0.52
SKA3-204ENST00000462482 VTI1AQ96AJ9 217 aa18.27■□□□□ 0.52
SKA3-204ENST00000462482 TRIM43Q96BQ3 446 aaPredicted RBP18.27■□□□□ 0.52
SKA3-204ENST00000462482 FAM161BQ96MY7 647 aa18.27■□□□□ 0.52
SKA3-204ENST00000462482 SEC62Q99442 399 aaKnown RBP18.27■□□□□ 0.52
SKA3-204ENST00000462482 ABHD16BQ9H3Z7 469 aa18.27■□□□□ 0.52
SKA3-204ENST00000462482 DNAJC25-GNG10A0A024R161 153 aa18.26■□□□□ 0.51
SKA3-204ENST00000462482 TSPY2A6NKD2 308 aa18.26■□□□□ 0.51
SKA3-204ENST00000462482 ADAMTS4O75173 837 aa18.26■□□□□ 0.51
SKA3-204ENST00000462482 DUSP11O75319 330 aaKnown RBP18.26■□□□□ 0.51
SKA3-204ENST00000462482 SNAI1O95863 264 aaPredicted RBP18.26■□□□□ 0.51
SKA3-204ENST00000462482 SLC1A4P43007 532 aa18.26■□□□□ 0.51
SKA3-204ENST00000462482 ACLYP53396 1101 aa18.26■□□□□ 0.51
SKA3-204ENST00000462482 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.26■□□□□ 0.51
SKA3-204ENST00000462482 PI4K2BQ8TCG2 481 aa18.26■□□□□ 0.51
SKA3-204ENST00000462482 LENG1Q96BZ8 264 aaPredicted RBP18.26■□□□□ 0.51
SKA3-204ENST00000462482 GLT1D1Q96MS3 346 aa18.26■□□□□ 0.51
SKA3-204ENST00000462482 ACAD9Q9H845 621 aa18.26■□□□□ 0.51
SKA3-204ENST00000462482 HOMER2Q9NSB8 354 aa18.26■□□□□ 0.51
SKA3-204ENST00000462482 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.26■□□□□ 0.51
SKA3-204ENST00000462482 STX8Q9UNK0 236 aa18.26■□□□□ 0.51
SKA3-204ENST00000462482 SYNRGQ9UMZ2 1314 aa18.25■□□□□ 0.51
SKA3-204ENST00000462482 BAZ2AQ9UIF9 1905 aaKnown RBP18.25■□□□□ 0.51
SKA3-204ENST00000462482 C6orf222P0C671 652 aaPredicted RBP18.25■□□□□ 0.51
SKA3-204ENST00000462482 C9orf50Q5SZB4 431 aa18.25■□□□□ 0.51
SKA3-204ENST00000462482 STAG1Q8WVM7 1258 aa18.25■□□□□ 0.51
SKA3-204ENST00000462482 TOX2Q96NM4 488 aa18.25■□□□□ 0.51
SKA3-204ENST00000462482 PCDHB15Q9Y5E8 787 aa18.25■□□□□ 0.51
SKA3-204ENST00000462482 PLIN4Q96Q06 1357 aa18.25■□□□□ 0.51
SKA3-204ENST00000462482 RLFQ13129 1914 aa18.25■□□□□ 0.51
SKA3-204ENST00000462482 MROH7Q68CQ1 1323 aa18.24■□□□□ 0.51
SKA3-204ENST00000462482 KIAA0355O15063 1070 aa18.24■□□□□ 0.51
SKA3-204ENST00000462482 SMAD3P84022 425 aaKnown RBP18.24■□□□□ 0.51
SKA3-204ENST00000462482 FPGSQ05932 587 aa18.24■□□□□ 0.51
SKA3-204ENST00000462482 KCNA10Q16322 511 aa18.24■□□□□ 0.51
SKA3-204ENST00000462482 TKFCQ3LXA3 575 aa18.24■□□□□ 0.51
SKA3-204ENST00000462482 NOL8Q76FK4 1167 aaKnown RBP18.24■□□□□ 0.51
SKA3-204ENST00000462482 ANKRD33Q7Z3H0 272 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms