RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 TMEM232C9JQI7 657 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 STRNO43815 780 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 ZBED4O75132 1171 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 XRCC5P13010 732 aaKnown RBP13.91□□□□□ -0.18
VPS52-213ENST00000461743 MCCP23508 829 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 FLT3LGP49771 235 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 GRB14Q14449 540 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 KRT32Q14532 448 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 TMEM132BQ14DG7 1078 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 CCDC96Q2M329 555 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 Q3C1V9 767 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 IFIT1BQ5T764 474 aaKnown RBP13.91□□□□□ -0.18
VPS52-213ENST00000461743 IFFO2Q5TF58 517 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 BTNL9Q6UXG8 535 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 STOX1Q6ZVD7 989 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.91□□□□□ -0.18
VPS52-213ENST00000461743 MB21D2Q8IYB1 491 aaPredicted RBP13.91□□□□□ -0.18
VPS52-213ENST00000461743 PNMA1Q8ND90 353 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 ZNF333Q96JL9 665 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 APBA2Q99767 749 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 MOV10L1Q9BXT6 1211 aaKnown RBP13.91□□□□□ -0.18
VPS52-213ENST00000461743 TSHZ2Q9NRE2 1034 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 PNMA2Q9UL42 364 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 WDR19Q8NEZ3 1342 aa13.9□□□□□ -0.18
VPS52-213ENST00000461743 LRRC37A2A6NM11 1700 aa13.9□□□□□ -0.18
VPS52-213ENST00000461743 ZKSCAN1P17029 563 aaPredicted RBP13.9□□□□□ -0.18
VPS52-213ENST00000461743 GRK4P32298 578 aa13.9□□□□□ -0.18
VPS52-213ENST00000461743 RGS2P41220 211 aa13.9□□□□□ -0.18
VPS52-213ENST00000461743 ZNF543Q08ER8 600 aa13.9□□□□□ -0.18
VPS52-213ENST00000461743 IKQ13123 557 aaPredicted RBP13.9□□□□□ -0.18
VPS52-213ENST00000461743 SEC23AQ15436 765 aa13.9□□□□□ -0.18
VPS52-213ENST00000461743 TSGA10IPQ3SY00 556 aa13.9□□□□□ -0.18
VPS52-213ENST00000461743 ASPRV1Q53RT3 343 aa13.9□□□□□ -0.18
VPS52-213ENST00000461743 MORN1Q5T089 497 aa13.9□□□□□ -0.18
VPS52-213ENST00000461743 NKX2-3Q8TAU0 364 aa13.9□□□□□ -0.18
VPS52-213ENST00000461743 USP6NLQ92738 828 aa13.9□□□□□ -0.18
VPS52-213ENST00000461743 KIFC2Q96AC6 838 aa13.9□□□□□ -0.18
VPS52-213ENST00000461743 ZKSCAN3Q9BRR0 538 aa13.9□□□□□ -0.18
VPS52-213ENST00000461743 GJD2Q9UKL4 321 aa13.9□□□□□ -0.18
VPS52-213ENST00000461743 ISY1Q9ULR0 285 aaKnown RBP13.9□□□□□ -0.18
VPS52-213ENST00000461743 GABRQQ9UN88 632 aa13.9□□□□□ -0.18
VPS52-213ENST00000461743 CTDP1Q9Y5B0 961 aaPredicted RBP13.9□□□□□ -0.18
VPS52-213ENST00000461743 ADCY3O60266 1144 aa13.89□□□□□ -0.19
VPS52-213ENST00000461743 HOXC6P09630 235 aa13.89□□□□□ -0.19
VPS52-213ENST00000461743 ERCC3P19447 782 aa13.89□□□□□ -0.19
VPS52-213ENST00000461743 PTPREP23469 700 aa13.89□□□□□ -0.19
VPS52-213ENST00000461743 MCM5P33992 734 aa13.89□□□□□ -0.19
VPS52-213ENST00000461743 STAT3P40763 770 aa13.89□□□□□ -0.19
VPS52-213ENST00000461743 UBXN2AP68543 259 aa13.89□□□□□ -0.19
VPS52-213ENST00000461743 MAP2K5Q13163 448 aa13.89□□□□□ -0.19
VPS52-213ENST00000461743 PLS1Q14651 629 aa13.89□□□□□ -0.19
VPS52-213ENST00000461743 KCTD1Q719H9 257 aa13.89□□□□□ -0.19
VPS52-213ENST00000461743 CYB5R4Q7L1T6 521 aa13.89□□□□□ -0.19
VPS52-213ENST00000461743 TMEM87BQ96K49 555 aa13.89□□□□□ -0.19
VPS52-213ENST00000461743 TAF6LQ9Y6J9 622 aa13.89□□□□□ -0.19
VPS52-213ENST00000461743 BAZ2BQ9UIF8 2168 aaKnown RBP13.89□□□□□ -0.19
VPS52-213ENST00000461743 IFIT3O14879 490 aaKnown RBP13.88□□□□□ -0.19
VPS52-213ENST00000461743 PEX10O60683 326 aa13.88□□□□□ -0.19
VPS52-213ENST00000461743 HMGCRP04035 888 aa13.88□□□□□ -0.19
VPS52-213ENST00000461743 CAPN2P17655 700 aa13.88□□□□□ -0.19
VPS52-213ENST00000461743 WTAPQ15007 396 aa13.88□□□□□ -0.19
VPS52-213ENST00000461743 TKFCQ3LXA3 575 aa13.88□□□□□ -0.19
VPS52-213ENST00000461743 SYDE2Q5VT97 1194 aa13.88□□□□□ -0.19
VPS52-213ENST00000461743 WDR78Q5VTH9 848 aa13.88□□□□□ -0.19
VPS52-213ENST00000461743 SNRNP48Q6IEG0 339 aaKnown RBP13.88□□□□□ -0.19
VPS52-213ENST00000461743 NCAPG2Q86XI2 1143 aa13.88□□□□□ -0.19
VPS52-213ENST00000461743 KCNB2Q92953 911 aa13.88□□□□□ -0.19
VPS52-213ENST00000461743 RANBP17Q9H2T7 1088 aaKnown RBP13.88□□□□□ -0.19
VPS52-213ENST00000461743 SLC5A4Q9NY91 659 aa13.88□□□□□ -0.19
VPS52-213ENST00000461743 FBXO40Q9UH90 709 aa13.88□□□□□ -0.19
VPS52-213ENST00000461743 PRR12Q9ULL5 1215 aa13.88□□□□□ -0.19
VPS52-213ENST00000461743 ECM2O94769 699 aaPredicted RBP13.87□□□□□ -0.19
VPS52-213ENST00000461743 HMGB1P09429 215 aaKnown RBP13.87□□□□□ -0.19
VPS52-213ENST00000461743 HSPA4P34932 840 aa13.87□□□□□ -0.19
VPS52-213ENST00000461743 ANTXR2P58335 489 aa13.87□□□□□ -0.19
VPS52-213ENST00000461743 SAMD1Q6SPF0 538 aaPredicted RBP13.87□□□□□ -0.19
VPS52-213ENST00000461743 RASGRP2Q7LDG7 609 aa13.87□□□□□ -0.19
VPS52-213ENST00000461743 TMTC2Q8N394 836 aa13.87□□□□□ -0.19
VPS52-213ENST00000461743 CHST13Q8NET6 341 aa13.87□□□□□ -0.19
VPS52-213ENST00000461743 MAP3K14Q99558 947 aa13.87□□□□□ -0.19
VPS52-213ENST00000461743 CCDC85CA6NKD9 419 aa13.86□□□□□ -0.19
VPS52-213ENST00000461743 PRC1O43663 620 aa13.86□□□□□ -0.19
VPS52-213ENST00000461743 ICAM1P05362 532 aa13.86□□□□□ -0.19
VPS52-213ENST00000461743 PARP1P09874 1014 aaKnown RBP13.86□□□□□ -0.19
VPS52-213ENST00000461743 FCER1AP12319 257 aa13.86□□□□□ -0.19
VPS52-213ENST00000461743 ADORA2AP29274 412 aa13.86□□□□□ -0.19
VPS52-213ENST00000461743 LIFRP42702 1097 aa13.86□□□□□ -0.19
VPS52-213ENST00000461743 KCTD2Q14681 263 aa13.86□□□□□ -0.19
VPS52-213ENST00000461743 TMEM67Q5HYA8 995 aa13.86□□□□□ -0.19
VPS52-213ENST00000461743 SH3TC2Q8TF17 1288 aa13.86□□□□□ -0.19
VPS52-213ENST00000461743 MTMR7Q9Y216 660 aa13.86□□□□□ -0.19
VPS52-213ENST00000461743 ZNF536O15090 1300 aa13.86□□□□□ -0.19
VPS52-213ENST00000461743 FRMPD2Q68DX3 1309 aaPredicted RBP13.86□□□□□ -0.19
VPS52-213ENST00000461743 SH2B2O14492 632 aaPredicted RBP13.85□□□□□ -0.19
VPS52-213ENST00000461743 DDAH1O94760 285 aa13.85□□□□□ -0.19
VPS52-213ENST00000461743 INHAP05111 366 aa13.85□□□□□ -0.19
VPS52-213ENST00000461743 OLFML2BQ68BL8 750 aa13.85□□□□□ -0.19
VPS52-213ENST00000461743 CATIPQ7Z7H3 387 aa13.85□□□□□ -0.19
VPS52-213ENST00000461743 IGDCC4Q8TDY8 1250 aa13.85□□□□□ -0.19
VPS52-213ENST00000461743 NEK1Q96PY6 1258 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms