RNA–Protein interactions for RNA: ENST00000461347.5

NCL-207, Transcript of nucleolin, humanhuman

TSL 2

Gene NCL, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCL-207ENST00000461347 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.13■□□□□ 0.17
NCL-207ENST00000461347 PPM1EQ8WY54 764 aa16.12■□□□□ 0.17
NCL-207ENST00000461347 TUBGCP2Q9BSJ2 902 aa16.12■□□□□ 0.17
NCL-207ENST00000461347 USP54Q70EL1 1684 aa16.12■□□□□ 0.17
NCL-207ENST00000461347 CPDO75976 1380 aa16.12■□□□□ 0.17
NCL-207ENST00000461347 HSPA2P54652 639 aa16.12■□□□□ 0.17
NCL-207ENST00000461347 CHRNDQ07001 517 aa16.12■□□□□ 0.17
NCL-207ENST00000461347 CNNM4Q6P4Q7 775 aa16.12■□□□□ 0.17
NCL-207ENST00000461347 IGDCC4Q8TDY8 1250 aa16.12■□□□□ 0.17
NCL-207ENST00000461347 RPGRIP1Q96KN7 1286 aa16.12■□□□□ 0.17
NCL-207ENST00000461347 MYO1AQ9UBC5 1043 aa16.12■□□□□ 0.17
NCL-207ENST00000461347 PXDNQ92626 1479 aa16.12■□□□□ 0.17
NCL-207ENST00000461347 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.12■□□□□ 0.17
NCL-207ENST00000461347 SRGAP2O75044 1071 aa16.12■□□□□ 0.17
NCL-207ENST00000461347 MRPS25P82663 173 aaKnown RBP16.12■□□□□ 0.17
NCL-207ENST00000461347 TTC19Q6DKK2 380 aaPredicted RBP16.12■□□□□ 0.17
NCL-207ENST00000461347 RAD9BQ6WBX8 426 aa16.12■□□□□ 0.17
NCL-207ENST00000461347 RRP36Q96EU6 259 aaKnown RBP16.12■□□□□ 0.17
NCL-207ENST00000461347 ISCA1Q9BUE6 129 aa16.12■□□□□ 0.17
NCL-207ENST00000461347 COL15A1P39059 1388 aa16.12■□□□□ 0.17
NCL-207ENST00000461347 CUL4BQ13620 913 aa16.11■□□□□ 0.17
NCL-207ENST00000461347 BCAS4Q8TDM0 211 aa16.11■□□□□ 0.17
NCL-207ENST00000461347 STK36Q9NRP7 1315 aa16.11■□□□□ 0.17
NCL-207ENST00000461347 PARP10Q53GL7 1025 aa16.11■□□□□ 0.17
NCL-207ENST00000461347 ABHD10Q9NUJ1 306 aa16.11■□□□□ 0.17
NCL-207ENST00000461347 PTPAQ15257 358 aa16.11■□□□□ 0.17
NCL-207ENST00000461347 ZNF579Q8NAF0 562 aaKnown RBP16.11■□□□□ 0.17
NCL-207ENST00000461347 GIMAP7Q8NHV1 300 aa16.11■□□□□ 0.17
NCL-207ENST00000461347 TRIM49BA6NDI0 452 aa16.11■□□□□ 0.17
NCL-207ENST00000461347 HIBADHP31937 336 aaKnown RBP16.11■□□□□ 0.17
NCL-207ENST00000461347 VSNL1P62760 191 aa16.11■□□□□ 0.17
NCL-207ENST00000461347 PPP1R12BO60237 982 aaPredicted RBP16.1■□□□□ 0.17
NCL-207ENST00000461347 CCT5P48643 541 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 ATP1A2P50993 1020 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 GNGT1P63211 74 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 ZNF658Q5TYW1 1059 aaPredicted RBP16.1■□□□□ 0.17
NCL-207ENST00000461347 PNMA1Q8ND90 353 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 LRRC27Q9C0I9 530 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 SUGCTQ9HAC7 445 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 GSG1L2A8MUP6 293 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 INPP5BP32019 993 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 LIG3P49916 1009 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 FXR1P51114 621 aaKnown RBP eCLIP16.1■□□□□ 0.175e-8■■□□□ 12.8
NCL-207ENST00000461347 PPFIA1Q13136 1202 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 NONOQ15233 471 aaKnown RBP eCLIP16.1■□□□□ 0.17
NCL-207ENST00000461347 TCP11X2Q5H9J9 407 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 TRIM58Q8NG06 486 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 NOX5Q96PH1 765 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 SLC39A2Q9NP94 309 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 BUB1O43683 1085 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 TBC1D8O95759 1140 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 LDHBP07195 334 aaKnown RBP16.1■□□□□ 0.17
NCL-207ENST00000461347 GOLGA8HP0CJ92 632 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 DYDC1Q8WWB3 177 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 ZNF446Q9NWS9 450 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 HDAC6Q9UBN7 1215 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 LRWD1Q9UFC0 647 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 RWDD2AQ9UIY3 292 aa16.1■□□□□ 0.17
NCL-207ENST00000461347 CXCR5P32302 372 aa16.09■□□□□ 0.17
NCL-207ENST00000461347 KLHL7Q8IXQ5 586 aa16.09■□□□□ 0.17
NCL-207ENST00000461347 CNOT6LQ96LI5 555 aaKnown RBP16.09■□□□□ 0.17
NCL-207ENST00000461347 TBC1D7Q9P0N9 293 aa16.09■□□□□ 0.17
NCL-207ENST00000461347 RIPOR2Q9Y4F9 1068 aa16.09■□□□□ 0.17
NCL-207ENST00000461347 WDR17Q8IZU2 1322 aa16.09■□□□□ 0.17
NCL-207ENST00000461347 TECP42680 631 aa16.09■□□□□ 0.17
NCL-207ENST00000461347 A0A1B0GTH6 734 aa16.09■□□□□ 0.17
NCL-207ENST00000461347 LONP1P36776 959 aaKnown RBP16.09■□□□□ 0.17
NCL-207ENST00000461347 GUCY2FP51841 1108 aa16.09■□□□□ 0.17
NCL-207ENST00000461347 RBM5P52756 815 aaKnown RBP eCLIP16.09■□□□□ 0.173e-12■■■■■ 43.4
NCL-207ENST00000461347 C2orf54Q08AI8 447 aa16.09■□□□□ 0.17
NCL-207ENST00000461347 DDB1Q16531 1140 aa16.09■□□□□ 0.17
NCL-207ENST00000461347 FOXP4Q8IVH2 680 aaPredicted RBP16.09■□□□□ 0.17
NCL-207ENST00000461347 PIGBQ92521 554 aa16.09■□□□□ 0.17
NCL-207ENST00000461347 SETDB2Q96T68 719 aa16.09■□□□□ 0.17
NCL-207ENST00000461347 HPSEQ9Y251 543 aa16.09■□□□□ 0.17
NCL-207ENST00000461347 C6orf229H3BNL8 230 aa16.08■□□□□ 0.17
NCL-207ENST00000461347 PTPROQ16827 1216 aa16.08■□□□□ 0.17
NCL-207ENST00000461347 GSPT2Q8IYD1 628 aaKnown RBP16.08■□□□□ 0.17
NCL-207ENST00000461347 STAG1Q8WVM7 1258 aa16.08■□□□□ 0.17
NCL-207ENST00000461347 SALL1Q9NSC2 1324 aa16.08■□□□□ 0.16
NCL-207ENST00000461347 PRPF3O43395 683 aaKnown RBP16.08■□□□□ 0.16
NCL-207ENST00000461347 PICALMQ13492 652 aa16.08■□□□□ 0.16
NCL-207ENST00000461347 NR1I3Q14994 352 aa16.08■□□□□ 0.16
NCL-207ENST00000461347 KCTD16Q68DU8 428 aa16.08■□□□□ 0.16
NCL-207ENST00000461347 CCDC84Q86UT8 332 aaPredicted RBP16.08■□□□□ 0.16
NCL-207ENST00000461347 CCDC87Q9NVE4 849 aa16.08■□□□□ 0.16
NCL-207ENST00000461347 PPP1R2P41236 205 aa16.08■□□□□ 0.16
NCL-207ENST00000461347 EIF6P56537 245 aaKnown RBP16.08■□□□□ 0.16
NCL-207ENST00000461347 TNNC1P63316 161 aa16.08■□□□□ 0.16
NCL-207ENST00000461347 TRIM65Q6PJ69 517 aa16.08■□□□□ 0.16
NCL-207ENST00000461347 NELFCDQ8IXH7 590 aa16.08■□□□□ 0.16
NCL-207ENST00000461347 SNX29Q8TEQ0 813 aa16.08■□□□□ 0.16
NCL-207ENST00000461347 SELENOOQ9BVL4 669 aa16.08■□□□□ 0.16
NCL-207ENST00000461347 SLC9C1Q4G0N8 1177 aa16.07■□□□□ 0.16
NCL-207ENST00000461347 IFT20Q8IY31 132 aa16.07■□□□□ 0.16
NCL-207ENST00000461347 CHP1Q99653 195 aa16.07■□□□□ 0.16
NCL-207ENST00000461347 TMEM94Q12767 1356 aa16.07■□□□□ 0.16
NCL-207ENST00000461347 TTC26A0AVF1 554 aa16.07■□□□□ 0.16
NCL-207ENST00000461347 FAM170AA1A519 330 aa16.07■□□□□ 0.16
NCL-207ENST00000461347 DDAH1O94760 285 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms