RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 SYCP1Q15431 976 aa13.04□□□□□ -0.32
NPHP4-204ENST00000460696 VSTM4Q8IW00 320 aa13.04□□□□□ -0.32
NPHP4-204ENST00000460696 ENOX1Q8TC92 643 aaKnown RBP13.04□□□□□ -0.32
NPHP4-204ENST00000460696 SNX29Q8TEQ0 813 aa13.04□□□□□ -0.32
NPHP4-204ENST00000460696 GSDMAQ96QA5 445 aa13.04□□□□□ -0.32
NPHP4-204ENST00000460696 CWC15Q9P013 229 aaKnown RBP13.04□□□□□ -0.32
NPHP4-204ENST00000460696 CAMTA2O94983 1202 aa13.04□□□□□ -0.32
NPHP4-204ENST00000460696 RPN1P04843 607 aaKnown RBP13.04□□□□□ -0.32
NPHP4-204ENST00000460696 PCP11498 1178 aaKnown RBP13.04□□□□□ -0.32
NPHP4-204ENST00000460696 MRPL12P52815 198 aaKnown RBP13.04□□□□□ -0.32
NPHP4-204ENST00000460696 ZFYVE27Q5T4F4 411 aa13.04□□□□□ -0.32
NPHP4-204ENST00000460696 SPAG5Q96R06 1193 aa13.04□□□□□ -0.32
NPHP4-204ENST00000460696 DCP1AQ9NPI6 582 aaPredicted RBP13.04□□□□□ -0.32
NPHP4-204ENST00000460696 ZNF277Q9NRM2 450 aaPredicted RBP13.04□□□□□ -0.32
NPHP4-204ENST00000460696 TBC1D7Q9P0N9 293 aa13.04□□□□□ -0.32
NPHP4-204ENST00000460696 SEMA3EO15041 775 aa13.04□□□□□ -0.32
NPHP4-204ENST00000460696 USP17L2Q6R6M4 530 aa13.04□□□□□ -0.32
NPHP4-204ENST00000460696 CYP26C1Q6V0L0 522 aa13.04□□□□□ -0.32
NPHP4-204ENST00000460696 METTL16Q86W50 562 aaKnown RBP13.04□□□□□ -0.32
NPHP4-204ENST00000460696 TMTC1Q8IUR5 882 aa13.04□□□□□ -0.32
NPHP4-204ENST00000460696 ALS2CR12Q96Q35 445 aa13.04□□□□□ -0.32
NPHP4-204ENST00000460696 LRRC27Q9C0I9 530 aa13.04□□□□□ -0.32
NPHP4-204ENST00000460696 TTF2Q9UNY4 1162 aaKnown RBP13.04□□□□□ -0.32
NPHP4-204ENST00000460696 GTPBP6O43824 516 aaPredicted RBP13.03□□□□□ -0.32
NPHP4-204ENST00000460696 STX10O60499 249 aa13.03□□□□□ -0.32
NPHP4-204ENST00000460696 ERCC5P28715 1186 aaPredicted RBP13.03□□□□□ -0.32
NPHP4-204ENST00000460696 CHMP4BP1P59074 171 aa13.03□□□□□ -0.32
NPHP4-204ENST00000460696 GRIN1Q05586 938 aa13.03□□□□□ -0.32
NPHP4-204ENST00000460696 MAP9Q49MG5 647 aa13.03□□□□□ -0.32
NPHP4-204ENST00000460696 CTR9Q6PD62 1173 aa13.03□□□□□ -0.32
NPHP4-204ENST00000460696 TMTC3Q6ZXV5 915 aa13.03□□□□□ -0.32
NPHP4-204ENST00000460696 PAGE5Q96GU1 130 aa13.03□□□□□ -0.32
NPHP4-204ENST00000460696 MROH7-TTC4A0A0A0MT08 1334 aa13.03□□□□□ -0.32
NPHP4-204ENST00000460696 STK36Q9NRP7 1315 aa13.03□□□□□ -0.32
NPHP4-204ENST00000460696 POTEB2H3BUK9 544 aa13.03□□□□□ -0.32
NPHP4-204ENST00000460696 PPP1R12BO60237 982 aaPredicted RBP13.03□□□□□ -0.32
NPHP4-204ENST00000460696 LRP10Q7Z4F1 713 aa13.03□□□□□ -0.32
NPHP4-204ENST00000460696 BRIP1Q9BX63 1249 aa13.03□□□□□ -0.32
NPHP4-204ENST00000460696 AGXT2Q9BYV1 514 aa13.03□□□□□ -0.32
NPHP4-204ENST00000460696 CALCRLQ16602 461 aa13.03□□□□□ -0.32
NPHP4-204ENST00000460696 EHBP1Q8NDI1 1231 aa13.03□□□□□ -0.32
NPHP4-204ENST00000460696 RBL2Q08999 1139 aa13.02□□□□□ -0.32
NPHP4-204ENST00000460696 NCBP1Q09161 790 aaKnown RBP13.02□□□□□ -0.32
NPHP4-204ENST00000460696 ARMCX5Q6P1M9 558 aa13.02□□□□□ -0.32
NPHP4-204ENST00000460696 NAPGQ99747 312 aaPredicted RBP13.02□□□□□ -0.32
NPHP4-204ENST00000460696 SPDYE3A6NKU9 549 aa13.02□□□□□ -0.33
NPHP4-204ENST00000460696 ADCY7P51828 1080 aa13.02□□□□□ -0.33
NPHP4-204ENST00000460696 FCHSD1Q86WN1 690 aa13.02□□□□□ -0.33
NPHP4-204ENST00000460696 FHDC1Q9C0D6 1143 aaPredicted RBP13.02□□□□□ -0.33
NPHP4-204ENST00000460696 USP40Q9NVE5 1235 aa13.02□□□□□ -0.33
NPHP4-204ENST00000460696 TMCO5BA8MYB1 307 aa13.02□□□□□ -0.33
NPHP4-204ENST00000460696 TAF3Q5VWG9 929 aa13.02□□□□□ -0.33
NPHP4-204ENST00000460696 SMAP1Q8IYB5 467 aaPredicted RBP13.02□□□□□ -0.33
NPHP4-204ENST00000460696 SH3RF3Q8TEJ3 882 aaPredicted RBP13.02□□□□□ -0.33
NPHP4-204ENST00000460696 ZFP91Q96JP5 570 aaPredicted RBP13.02□□□□□ -0.33
NPHP4-204ENST00000460696 ZNF512BQ96KM6 892 aaPredicted RBP13.02□□□□□ -0.33
NPHP4-204ENST00000460696 FAM207AQ9NSI2 230 aaPredicted RBP13.02□□□□□ -0.33
NPHP4-204ENST00000460696 XDHP47989 1333 aa13.02□□□□□ -0.33
NPHP4-204ENST00000460696 PNPLA7Q6ZV29 1317 aa13.02□□□□□ -0.33
NPHP4-204ENST00000460696 TBCAO75347 108 aaKnown RBP13.01□□□□□ -0.33
NPHP4-204ENST00000460696 CNNM4Q6P4Q7 775 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 NEK11Q8NG66 645 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 PSMB7Q99436 277 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 OSBPL5Q9H0X9 879 aaPredicted RBP13.01□□□□□ -0.33
NPHP4-204ENST00000460696 HDAC9Q9UKV0 1011 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 SOWAHDA6NJG2 315 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 TACC1O75410 805 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 OR52Z1P0C646 297 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 DPEP1P16444 411 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 SLC1A4P43007 532 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 CCDC125Q86Z20 511 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 ERMNQ8TAM6 284 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 LZTS2Q9BRK4 669 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 SLC39A2Q9NP94 309 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 PCDHA4Q9UN74 947 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 SCAF8Q9UPN6 1271 aaKnown RBP13.01□□□□□ -0.33
NPHP4-204ENST00000460696 NFAT5O94916 1531 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 CACNA1FO60840 1977 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 NTSR2O95665 410 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 NEK8Q86SG6 692 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 NELFCDQ8IXH7 590 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 OR8K1Q8NGG5 319 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 LEMD3Q9Y2U8 911 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 SAMM50Q9Y512 469 aa13.01□□□□□ -0.33
NPHP4-204ENST00000460696 COL5A2P05997 1499 aaPredicted RBP13□□□□□ -0.33
NPHP4-204ENST00000460696 LONP1P36776 959 aaKnown RBP13□□□□□ -0.33
NPHP4-204ENST00000460696 COPB1P53618 953 aaKnown RBP13□□□□□ -0.33
NPHP4-204ENST00000460696 TBC1D22AQ8WUA7 517 aa13□□□□□ -0.33
NPHP4-204ENST00000460696 SLC4A9Q96Q91 983 aa13□□□□□ -0.33
NPHP4-204ENST00000460696 GDAQ9Y2T3 454 aa13□□□□□ -0.33
NPHP4-204ENST00000460696 TRIM14Q14142 442 aa13□□□□□ -0.33
NPHP4-204ENST00000460696 HERC4Q5GLZ8 1057 aaPredicted RBP13□□□□□ -0.33
NPHP4-204ENST00000460696 RBM43Q6ZSC3 357 aaKnown RBP13□□□□□ -0.33
NPHP4-204ENST00000460696 VPS36Q86VN1 386 aa13□□□□□ -0.33
NPHP4-204ENST00000460696 EIF4ENIF1Q9NRA8 985 aaKnown RBP13□□□□□ -0.33
NPHP4-204ENST00000460696 FBXO2Q9UK22 296 aaPredicted RBP13□□□□□ -0.33
NPHP4-204ENST00000460696 USP8P40818 1118 aa13□□□□□ -0.33
NPHP4-204ENST00000460696 TRAPPC10P48553 1259 aa13□□□□□ -0.33
NPHP4-204ENST00000460696 CCZ1BP86790 482 aa13□□□□□ -0.33
NPHP4-204ENST00000460696 CCZ1P86791 482 aaPredicted RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms