RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 NSUN7Q8NE18 718 aaKnown RBP6.91□□□□□ -1.3
VPS13D-202ENST00000460333 STAG1Q8WVM7 1258 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 LRRC45Q96CN5 670 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 NCOA5Q9HCD5 579 aaKnown RBP6.91□□□□□ -1.3
VPS13D-202ENST00000460333 ATF5Q9Y2D1 282 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-202ENST00000460333 ITGB4P16144 1822 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 TRIM21P19474 475 aaKnown RBP6.91□□□□□ -1.3
VPS13D-202ENST00000460333 ZFYVE27Q5T4F4 411 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 FBXO38Q6PIJ6 1188 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 FBXO33Q7Z6M2 555 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 CCDC144CPQ8IYA2 1237 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 SMARCC2Q8TAQ2 1214 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 LMBR1Q8WVP7 490 aa6.91□□□□□ -1.3
VPS13D-202ENST00000460333 FEZ2Q9UHY8 353 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-202ENST00000460333 ANKRD62A6NC57 917 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 SH2B2O14492 632 aaPredicted RBP6.9□□□□□ -1.3
VPS13D-202ENST00000460333 PCK1P35558 622 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 LIG3P49916 1009 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 PAK2Q13177 524 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 SEPT6Q14141 434 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 TADA2BQ86TJ2 420 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 TEX11Q8IYF3 940 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.9□□□□□ -1.3
VPS13D-202ENST00000460333 PPP1R13BQ96KQ4 1090 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 ACTR5Q9H9F9 607 aaPredicted RBP6.9□□□□□ -1.3
VPS13D-202ENST00000460333 STIM2Q9P246 746 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 ATP5DP30049 168 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 CYP2C19P33261 490 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 GNGT1P63211 74 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 LRMPQ12912 555 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 MTMR3Q13615 1198 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 PRR5LQ6MZQ0 368 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 RAB11FIP4Q86YS3 637 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 LARGE2Q8N3Y3 721 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 CNKSR1Q969H4 720 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 TSKSQ9UJT2 592 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 GUCA1BQ9UMX6 200 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 PPP1R12BO60237 982 aaPredicted RBP6.9□□□□□ -1.3
VPS13D-202ENST00000460333 ONECUT3O60422 494 aaPredicted RBP6.9□□□□□ -1.3
VPS13D-202ENST00000460333 LONRF2Q1L5Z9 754 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 CCDC40Q4G0X9 1142 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 FBXL16Q8N461 479 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 MLKLQ8NB16 471 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 RGS22Q8NE09 1264 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 CCDC77Q9BR77 488 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 SEC63Q9UGP8 760 aaKnown RBP6.9□□□□□ -1.3
VPS13D-202ENST00000460333 ODF2LQ9ULJ1 636 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 ZDHHC9Q9Y397 364 aa6.9□□□□□ -1.3
VPS13D-202ENST00000460333 USP17L12C9JPN9 530 aa6.9□□□□□ -1.31
VPS13D-202ENST00000460333 USP17L21D6R901 530 aa6.9□□□□□ -1.31
VPS13D-202ENST00000460333 MECOMQ03112 1051 aa6.9□□□□□ -1.31
VPS13D-202ENST00000460333 MUM1L1Q5H9M0 696 aa6.9□□□□□ -1.31
VPS13D-202ENST00000460333 APOA5Q6Q788 366 aa6.9□□□□□ -1.31
VPS13D-202ENST00000460333 SRGAP1Q7Z6B7 1085 aa6.9□□□□□ -1.31
VPS13D-202ENST00000460333 ZSCAN10Q96SZ4 725 aaPredicted RBP6.9□□□□□ -1.31
VPS13D-202ENST00000460333 LRRC27Q9C0I9 530 aa6.9□□□□□ -1.31
VPS13D-202ENST00000460333 CALML3P27482 149 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 SLC20A2Q08357 652 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 MFSD14BQ5SR56 506 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 STOX1Q6ZVD7 989 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 BCAS4Q8TDM0 211 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 SDR42E1Q8WUS8 393 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 COA1Q9GZY4 146 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 PDE11AQ9HCR9 933 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 GSG1L2A8MUP6 293 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 SNAP23O00161 211 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 RIMBP2O15034 1052 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 DDAH1O94760 285 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 SSBP05455 408 aaKnown RBP eCLIP6.89□□□□□ -1.31
VPS13D-202ENST00000460333 PPP1R2P41236 205 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 NLRP5P59047 1200 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 ARHGEF6Q15052 776 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 PPP2R5AQ15172 486 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 KIAA0753Q2KHM9 967 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 CCDC122Q5T0U0 273 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 CC2D2BQ6DHV5 1058 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 ISM2Q6H9L7 571 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 C8orf74Q6P047 294 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 HOOK3Q86VS8 718 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 SP8Q8IXZ3 490 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 ZNF654Q8IZM8 581 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 CEP120Q8N960 986 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 IQCDQ96DY2 449 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 MASTLQ96GX5 879 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 MYO1AQ9UBC5 1043 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 PPP2R2CQ9Y2T4 447 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 TNNI2P48788 182 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 RBM26Q5T8P6 1007 aaKnown RBP6.89□□□□□ -1.31
VPS13D-202ENST00000460333 RRAGBQ5VZM2 374 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 ARMC9Q7Z3E5 817 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 NIM1KQ8IY84 436 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 CCDC82Q8N4S0 544 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 IGSF22Q8N9C0 903 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 CAPZA3Q96KX2 299 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 CCDC42Q96M95 316 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 LZTS2Q9BRK4 669 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 TOGARAM1Q9Y4F4 1720 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 ATRNO75882 1429 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 H7C1D1 291 aa6.89□□□□□ -1.31
VPS13D-202ENST00000460333 CHUKO15111 745 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms