RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 SEC63Q9UGP8 760 aaKnown RBP16.94■□□□□ 0.3
TNF-208ENST00000449264 A0A0G2JLL6 359 aaPredicted RBP16.93■□□□□ 0.3
TNF-208ENST00000449264 VPS37CA5D8V6 355 aaPredicted RBP16.93■□□□□ 0.3
TNF-208ENST00000449264 PDCP20941 246 aa16.93■□□□□ 0.3
TNF-208ENST00000449264 DDIT3P35638 169 aa16.93■□□□□ 0.3
TNF-208ENST00000449264 PKP1Q13835 747 aa16.93■□□□□ 0.3
TNF-208ENST00000449264 PRRT2Q7Z6L0 340 aaPredicted RBP16.93■□□□□ 0.3
TNF-208ENST00000449264 WASF1Q92558 559 aa16.93■□□□□ 0.3
TNF-208ENST00000449264 RIOX1Q9H6W3 641 aa16.93■□□□□ 0.3
TNF-208ENST00000449264 JMJD4Q9H9V9 463 aa16.93■□□□□ 0.3
TNF-208ENST00000449264 RBM27Q9P2N5 1060 aaKnown RBP16.93■□□□□ 0.3
TNF-208ENST00000449264 ABT1Q9ULW3 272 aaKnown RBP16.93■□□□□ 0.3
TNF-208ENST00000449264 KCNH4Q9UQ05 1017 aa16.93■□□□□ 0.3
TNF-208ENST00000449264 CXCL11O14625 94 aa16.92■□□□□ 0.3
TNF-208ENST00000449264 FLOT1O75955 427 aa16.92■□□□□ 0.3
TNF-208ENST00000449264 SYT1P21579 422 aa16.92■□□□□ 0.3
TNF-208ENST00000449264 SMARCA1P28370 1054 aa16.92■□□□□ 0.3
TNF-208ENST00000449264 GUCY1B3Q02153 619 aa16.92■□□□□ 0.3
TNF-208ENST00000449264 FSTL1Q12841 308 aa16.92■□□□□ 0.3
TNF-208ENST00000449264 PKN1Q16512 942 aa16.92■□□□□ 0.3
TNF-208ENST00000449264 SH3D19Q5HYK7 790 aa16.92■□□□□ 0.3
TNF-208ENST00000449264 SAPCD2Q86UD0 394 aa16.92■□□□□ 0.3
TNF-208ENST00000449264 GPKOWQ92917 476 aaPredicted RBP eCLIP16.92■□□□□ 0.3
TNF-208ENST00000449264 C8orf76Q96K31 380 aa16.92■□□□□ 0.3
TNF-208ENST00000449264 GJB4Q9NTQ9 266 aa16.92■□□□□ 0.3
TNF-208ENST00000449264 FEM1BQ9UK73 627 aa16.92■□□□□ 0.3
TNF-208ENST00000449264 PRR12Q9ULL5 1215 aa16.92■□□□□ 0.3
TNF-208ENST00000449264 H3BQV1 296 aa16.91■□□□□ 0.3
TNF-208ENST00000449264 SCG2P13521 617 aa16.91■□□□□ 0.3
TNF-208ENST00000449264 ZNF157P51786 506 aaPredicted RBP16.91■□□□□ 0.3
TNF-208ENST00000449264 SNAP25P60880 206 aa16.91■□□□□ 0.3
TNF-208ENST00000449264 SNAPC2Q13487 334 aa16.91■□□□□ 0.3
TNF-208ENST00000449264 PFKFB3Q16875 520 aaPredicted RBP16.91■□□□□ 0.3
TNF-208ENST00000449264 TREML2Q5T2D2 321 aa16.91■□□□□ 0.3
TNF-208ENST00000449264 IFFO2Q5TF58 517 aa16.91■□□□□ 0.3
TNF-208ENST00000449264 FOXD4L5Q5VV16 416 aaPredicted RBP16.91■□□□□ 0.3
TNF-208ENST00000449264 BTNL9Q6UXG8 535 aa16.91■□□□□ 0.3
TNF-208ENST00000449264 HEATR3Q7Z4Q2 680 aa16.91■□□□□ 0.3
TNF-208ENST00000449264 FAM160B2Q86V87 743 aa16.91■□□□□ 0.3
TNF-208ENST00000449264 CHURC1Q8WUH1 139 aa16.91■□□□□ 0.3
TNF-208ENST00000449264 FOXD4L4Q8WXT5 416 aaPredicted RBP16.91■□□□□ 0.3
TNF-208ENST00000449264 SLF1Q9BQI6 1058 aa16.91■□□□□ 0.3
TNF-208ENST00000449264 TMEM88BA6NKF7 163 aa16.91■□□□□ 0.3
TNF-208ENST00000449264 STX6O43752 255 aa16.91■□□□□ 0.3
TNF-208ENST00000449264 CDC37Q16543 378 aaPredicted RBP16.91■□□□□ 0.3
TNF-208ENST00000449264 OTUD7BQ6GQQ9 843 aa16.91■□□□□ 0.3
TNF-208ENST00000449264 VPS54Q9P1Q0 977 aa16.91■□□□□ 0.3
TNF-208ENST00000449264 COL11A1P12107 1806 aaPredicted RBP16.9■□□□□ 0.3
TNF-208ENST00000449264 RLFQ13129 1914 aa16.9■□□□□ 0.3
TNF-208ENST00000449264 TRIM29Q14134 588 aa16.9■□□□□ 0.3
TNF-208ENST00000449264 SPRYD7Q5W111 196 aa16.9■□□□□ 0.3
TNF-208ENST00000449264 RASAL3Q86YV0 1011 aa16.9■□□□□ 0.3
TNF-208ENST00000449264 PROCA1Q8NCQ7 364 aaPredicted RBP16.9■□□□□ 0.3
TNF-208ENST00000449264 CHMP5Q9NZZ3 219 aa16.9■□□□□ 0.3
TNF-208ENST00000449264 CIZ1Q9ULV3 898 aaPredicted RBP16.9■□□□□ 0.3
TNF-208ENST00000449264 TLL2Q9Y6L7 1015 aa16.9■□□□□ 0.3
TNF-208ENST00000449264 ZBTB5O15062 677 aa16.89■□□□□ 0.29
TNF-208ENST00000449264 PLA2G6O60733 806 aa16.89■□□□□ 0.29
TNF-208ENST00000449264 ZBTB48P10074 688 aaPredicted RBP16.89■□□□□ 0.29
TNF-208ENST00000449264 QRICH1Q2TAL8 776 aa16.89■□□□□ 0.29
TNF-208ENST00000449264 WWC2Q6AWC2 1192 aa16.89■□□□□ 0.29
TNF-208ENST00000449264 RGMBQ6NW40 437 aa16.89■□□□□ 0.29
TNF-208ENST00000449264 PNMA6FA0A0J9YX94 578 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 USP17L15C9J2P7 530 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 USP17L13C9JLJ4 530 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 USP17L11C9JVI0 530 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 USP17L18D6R9N7 530 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 USP17L22D6RA61 530 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 USP17L17D6RBQ6 530 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 USP17L19D6RCP7 530 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 USP17L20D6RJB6 530 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 XBP1P17861 261 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 GTF2A2P52657 109 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 USP17L24Q0WX57 530 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 CCDC174Q6PII3 467 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 PAXIP1Q6ZW49 1069 aaPredicted RBP16.88■□□□□ 0.29
TNF-208ENST00000449264 MTMR8Q96EF0 704 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 PPP1R9AQ9ULJ8 1098 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 KCNJ14Q9UNX9 436 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 WDR33Q9C0J8 1336 aaKnown RBP16.88■□□□□ 0.29
TNF-208ENST00000449264 CCL15-CCL14A0A0B4J2E2 113 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 NUCB2P80303 420 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 CCL15Q16663 113 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 KRT40Q6A162 431 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 CATSPERGQ6ZRH7 1159 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 FASTKD5Q7L8L6 764 aaKnown RBP16.88■□□□□ 0.29
TNF-208ENST00000449264 PRPF38AQ8NAV1 312 aaKnown RBP16.88■□□□□ 0.29
TNF-208ENST00000449264 FBXO18Q8NFZ0 1043 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 SHISA4Q96DD7 197 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 AGTPBP1Q9UPW5 1226 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 MTMR6Q9Y217 621 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 SMCHD1A6NHR9 2005 aa16.88■□□□□ 0.29
TNF-208ENST00000449264 STXBP3O00186 592 aa16.87■□□□□ 0.29
TNF-208ENST00000449264 PPP1R11O60927 126 aaPredicted RBP16.87■□□□□ 0.29
TNF-208ENST00000449264 CETPP11597 493 aa16.87■□□□□ 0.29
TNF-208ENST00000449264 TAL1P17542 331 aaPredicted RBP16.87■□□□□ 0.29
TNF-208ENST00000449264 KCNA4P22459 653 aa16.87■□□□□ 0.29
TNF-208ENST00000449264 NAPAP54920 295 aa16.87■□□□□ 0.29
TNF-208ENST00000449264 IRX3P78415 501 aaPredicted RBP16.87■□□□□ 0.29
TNF-208ENST00000449264 MOGSQ13724 837 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms