RNA–Protein interactions for RNA: ENST00000448520.5

PDLIM2-213, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-213ENST00000448520 MINDY4BA8MYZ0 360 aa16.33■□□□□ 0.2
PDLIM2-213ENST00000448520 F5H6K3 240 aa16.33■□□□□ 0.2
PDLIM2-213ENST00000448520 POTEB2H3BUK9 544 aa16.33■□□□□ 0.2
PDLIM2-213ENST00000448520 MYCNP04198 464 aaPredicted RBP16.33■□□□□ 0.2
PDLIM2-213ENST00000448520 RASA1P20936 1047 aa16.33■□□□□ 0.2
PDLIM2-213ENST00000448520 KLRC3Q07444 240 aa16.33■□□□□ 0.2
PDLIM2-213ENST00000448520 RNF180Q86T96 592 aa16.33■□□□□ 0.2
PDLIM2-213ENST00000448520 MSL3Q8N5Y2 521 aaKnown RBP16.33■□□□□ 0.2
PDLIM2-213ENST00000448520 PRPF38AQ8NAV1 312 aaKnown RBP16.33■□□□□ 0.2
PDLIM2-213ENST00000448520 REPS2Q8NFH8 660 aa16.33■□□□□ 0.2
PDLIM2-213ENST00000448520 OSBP2Q969R2 916 aa16.33■□□□□ 0.2
PDLIM2-213ENST00000448520 EVI5LQ96CN4 794 aa16.33■□□□□ 0.2
PDLIM2-213ENST00000448520 SLF1Q9BQI6 1058 aa16.33■□□□□ 0.2
PDLIM2-213ENST00000448520 COL11A1P12107 1806 aaPredicted RBP16.33■□□□□ 0.2
PDLIM2-213ENST00000448520 PATL2C9JE40 543 aaKnown RBP16.32■□□□□ 0.2
PDLIM2-213ENST00000448520 ADCYAP1R1P41586 468 aa16.32■□□□□ 0.2
PDLIM2-213ENST00000448520 Q7L0L9 218 aa16.32■□□□□ 0.2
PDLIM2-213ENST00000448520 MKL1Q969V6 931 aa16.32■□□□□ 0.2
PDLIM2-213ENST00000448520 TEX13BQ9BXU2 312 aa16.32■□□□□ 0.2
PDLIM2-213ENST00000448520 XPNPEP3Q9NQH7 507 aa16.32■□□□□ 0.2
PDLIM2-213ENST00000448520 SYNPO2Q9UMS6 1093 aa16.32■□□□□ 0.2
PDLIM2-213ENST00000448520 DLL1O00548 723 aa16.31■□□□□ 0.2
PDLIM2-213ENST00000448520 ATP2A1O14983 1001 aa16.31■□□□□ 0.2
PDLIM2-213ENST00000448520 PGK2P07205 417 aa16.31■□□□□ 0.2
PDLIM2-213ENST00000448520 FAM47AQ5JRC9 791 aa16.31■□□□□ 0.2
PDLIM2-213ENST00000448520 DDX11Q96FC9 970 aa16.31■□□□□ 0.2
PDLIM2-213ENST00000448520 CLIP2Q9UDT6 1046 aa16.31■□□□□ 0.2
PDLIM2-213ENST00000448520 PHF24Q9UPV7 400 aa16.31■□□□□ 0.2
PDLIM2-213ENST00000448520 CNPY2Q9Y2B0 182 aa16.31■□□□□ 0.2
PDLIM2-213ENST00000448520 CTDP1Q9Y5B0 961 aaPredicted RBP16.31■□□□□ 0.2
PDLIM2-213ENST00000448520 GPAA1O43292 621 aa16.3■□□□□ 0.2
PDLIM2-213ENST00000448520 ZBED4O75132 1171 aa16.3■□□□□ 0.2
PDLIM2-213ENST00000448520 NDUFB10O96000 172 aa16.3■□□□□ 0.2
PDLIM2-213ENST00000448520 APPP05067 770 aa16.3■□□□□ 0.2
PDLIM2-213ENST00000448520 AKR1A1P14550 325 aa16.3■□□□□ 0.2
PDLIM2-213ENST00000448520 TDO2P48775 406 aa16.3■□□□□ 0.2
PDLIM2-213ENST00000448520 TRIM60Q495X7 471 aa16.3■□□□□ 0.2
PDLIM2-213ENST00000448520 FERMT2Q96AC1 680 aa16.3■□□□□ 0.2
PDLIM2-213ENST00000448520 TSEN34Q9BSV6 310 aaKnown RBP16.3■□□□□ 0.2
PDLIM2-213ENST00000448520 NACAP1Q9BZK3 213 aa16.3■□□□□ 0.2
PDLIM2-213ENST00000448520 PRDM5Q9NQX1 630 aaPredicted RBP16.3■□□□□ 0.2
PDLIM2-213ENST00000448520 TACC3Q9Y6A5 838 aa16.3■□□□□ 0.2
PDLIM2-213ENST00000448520 PLXNA1Q9UIW2 1896 aa16.3■□□□□ 0.2
PDLIM2-213ENST00000448520 ROBO3Q96MS0 1386 aa16.29■□□□□ 0.2
PDLIM2-213ENST00000448520 IGKV6D-41A0A0C4DH26 115 aa16.29■□□□□ 0.2
PDLIM2-213ENST00000448520 ZNF865P0CJ78 1059 aaPredicted RBP16.29■□□□□ 0.2
PDLIM2-213ENST00000448520 FDX1P10109 184 aa16.29■□□□□ 0.2
PDLIM2-213ENST00000448520 SNRNP48Q6IEG0 339 aaKnown RBP16.29■□□□□ 0.2
PDLIM2-213ENST00000448520 MAMDC4Q6UXC1 1216 aa16.29■□□□□ 0.2
PDLIM2-213ENST00000448520 IFNL3Q8IZI9 196 aa16.29■□□□□ 0.2
PDLIM2-213ENST00000448520 STK11IPQ8N1F8 1099 aa16.29■□□□□ 0.2
PDLIM2-213ENST00000448520 FEM1BQ9UK73 627 aa16.29■□□□□ 0.2
PDLIM2-213ENST00000448520 FAM184BQ9ULE4 1060 aa16.29■□□□□ 0.2
PDLIM2-213ENST00000448520 A0A0C4DFX4 3053 aa16.29■□□□□ 0.2
PDLIM2-213ENST00000448520 SYNGAP1Q96PV0 1343 aa16.28■□□□□ 0.2
PDLIM2-213ENST00000448520 GREB1LQ9C091 1923 aaPredicted RBP16.28■□□□□ 0.2
PDLIM2-213ENST00000448520 TTLL1O95922 423 aa16.28■□□□□ 0.2
PDLIM2-213ENST00000448520 SLC3A2P08195 630 aaKnown RBP16.28■□□□□ 0.2
PDLIM2-213ENST00000448520 TLE2Q04725 743 aa16.28■□□□□ 0.2
PDLIM2-213ENST00000448520 PDE4BQ07343 736 aa16.28■□□□□ 0.2
PDLIM2-213ENST00000448520 NMIQ13287 307 aaPredicted RBP16.28■□□□□ 0.2
PDLIM2-213ENST00000448520 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.28■□□□□ 0.25e-6■■■□□ 17.2
PDLIM2-213ENST00000448520 ZNF467Q7Z7K2 595 aaPredicted RBP16.28■□□□□ 0.2
PDLIM2-213ENST00000448520 BADQ92934 168 aa16.28■□□□□ 0.2
PDLIM2-213ENST00000448520 FAM227BQ96M60 508 aa16.28■□□□□ 0.2
PDLIM2-213ENST00000448520 SEC62Q99442 399 aaKnown RBP16.28■□□□□ 0.2
PDLIM2-213ENST00000448520 NUP88Q99567 741 aaPredicted RBP16.28■□□□□ 0.2
PDLIM2-213ENST00000448520 IL25Q9H293 177 aa16.28■□□□□ 0.2
PDLIM2-213ENST00000448520 MTMR4Q9NYA4 1195 aa16.28■□□□□ 0.2
PDLIM2-213ENST00000448520 FBXO40Q9UH90 709 aa16.28■□□□□ 0.2
PDLIM2-213ENST00000448520 DNAJC25-GNG10A0A024R161 153 aa16.27■□□□□ 0.2
PDLIM2-213ENST00000448520 A0A0D9SFI3 127 aa16.27■□□□□ 0.2
PDLIM2-213ENST00000448520 PGK1P00558 417 aa16.27■□□□□ 0.2
PDLIM2-213ENST00000448520 TAL1P17542 331 aaPredicted RBP16.27■□□□□ 0.2
PDLIM2-213ENST00000448520 CHMLP26374 656 aa16.27■□□□□ 0.2
PDLIM2-213ENST00000448520 OAZ1P54368 228 aa16.27■□□□□ 0.2
PDLIM2-213ENST00000448520 SHHQ15465 462 aa16.27■□□□□ 0.2
PDLIM2-213ENST00000448520 PPP4R3BQ5MIZ7 849 aa16.27■□□□□ 0.2
PDLIM2-213ENST00000448520 CPXCR1Q8N123 301 aa16.27■□□□□ 0.2
PDLIM2-213ENST00000448520 GMCL1P1Q8NEA9 526 aa16.27■□□□□ 0.2
PDLIM2-213ENST00000448520 CHST13Q8NET6 341 aa16.27■□□□□ 0.2
PDLIM2-213ENST00000448520 NUP133Q8WUM0 1156 aa16.27■□□□□ 0.2
PDLIM2-213ENST00000448520 KIFC2Q96AC6 838 aa16.27■□□□□ 0.2
PDLIM2-213ENST00000448520 CEP95Q96GE4 821 aa16.27■□□□□ 0.2
PDLIM2-213ENST00000448520 SLC38A10Q9HBR0 1119 aa16.27■□□□□ 0.2
PDLIM2-213ENST00000448520 EPB41L4AQ9HCS5 686 aaPredicted RBP16.27■□□□□ 0.2
PDLIM2-213ENST00000448520 PDLIM7Q9NR12 457 aa16.27■□□□□ 0.2
PDLIM2-213ENST00000448520 RIPK3Q9Y572 518 aa16.27■□□□□ 0.2
PDLIM2-213ENST00000448520 MYH4Q9Y623 1939 aa16.27■□□□□ 0.19
PDLIM2-213ENST00000448520 TRIM43BA6NCK2 446 aa16.26■□□□□ 0.19
PDLIM2-213ENST00000448520 M0R2C6 588 aa16.26■□□□□ 0.19
PDLIM2-213ENST00000448520 CDC45O75419 566 aa16.26■□□□□ 0.19
PDLIM2-213ENST00000448520 SNAI1O95863 264 aaPredicted RBP16.26■□□□□ 0.19
PDLIM2-213ENST00000448520 CLTBP09497 229 aa16.26■□□□□ 0.19
PDLIM2-213ENST00000448520 ZNF697Q5TEC3 545 aa16.26■□□□□ 0.19
PDLIM2-213ENST00000448520 CCDC129Q6ZRS4 1044 aa16.26■□□□□ 0.19
PDLIM2-213ENST00000448520 NEDD1Q8NHV4 660 aa16.26■□□□□ 0.19
PDLIM2-213ENST00000448520 TRIM43Q96BQ3 446 aaPredicted RBP16.26■□□□□ 0.19
PDLIM2-213ENST00000448520 TOX2Q96NM4 488 aa16.26■□□□□ 0.19
PDLIM2-213ENST00000448520 MOXD2PA6NHM9 499 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms